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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    30001 1rvv:O (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30002 1rvv:P (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30003 1rvv:Q (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30004 1rvv:R (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30005 1rvv:S (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30006 1rvv:S (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30007 1rvv:T (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30008 1rvv:U (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30009 1rvv:V (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30010 1rvv:V (2.4) BS02 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30011 1rvv:W (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30012 1rvv:X (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30013 1rvv:Y (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30014 1rvv:Z (2.4) BS01 INI 2.5.1.78 GO:0000906 ... P11998 7473709
    30015 1rvw:A (2.5) BS01 HEM ? GO:0004601 ... P69905 9649306
    30016 1rvw:B (2.5) BS01 HEM ? GO:0004601 ... P68871 9649306
    30017 1rvx:A (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    30018 1rvx:C (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    30019 1rvx:E (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    30020 1rvx:G (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    30021 1rvx:I (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    30022 1rvx:K (2.2) BS01 SIA ? GO:0019031 ... P03452 14764886
    30023 1rvy:A (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P07511 15170323
    30024 1rvy:B (2.9) BS01 PLG 2.1.2.1 GO:0000900 ... P07511 15170323
    30025 1rvy:B (2.9) BS02 PLP 2.1.2.1 GO:0000900 ... P07511 15170323
    30026 1rvz:A (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    30027 1rvz:A (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    30028 1rvz:C (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    30029 1rvz:C (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    30030 1rvz:E (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    30031 1rvz:E (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    30032 1rvz:G (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    30033 1rvz:G (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    30034 1rvz:I (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    30035 1rvz:I (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    30036 1rvz:K (2.25) BS01 GAL ? GO:0019031 ... P03452 14764886
    30037 1rvz:K (2.25) BS02 SIA ? GO:0019031 ... P03452 14764886
    30038 1rw8:A (2.4) BS01 580 2.7.11.30 GO:0004672 ... P36897 15177479 MOAD: ic50=0.175uM
    PDBbind: -logKd/Ki=6.76, IC50=0.175uM
    BindingDB: IC50=1320nM
    30039 1rwc:A (1.9) BS01 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    30040 1rwe:B (1.8) BS01 peptide ? GO:0005179 ... P01308 15610006
    30041 1rwe:D (1.8) BS01 peptide ? GO:0005179 ... P01308 15610006
    30042 1rwf:A (1.45) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    30043 1rwf:A (1.45) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    30044 1rwf:A (1.45) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    30045 1rwf:A (1.45) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    30046 1rwg:A (1.5) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    30047 1rwg:A (1.5) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    30048 1rwg:A (1.5) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    30049 1rwg:A (1.5) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    30050 1rwh:A (1.25) BS01 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    30051 1rwh:A (1.25) BS02 GCT 4.2.2.5 GO:0003824 ... P84141 15003453
    30052 1rwh:A (1.25) BS03 ASG 4.2.2.5 GO:0003824 ... P84141 15003453
    30053 1rwh:A (1.25) BS04 GAD 4.2.2.5 GO:0003824 ... P84141 15003453
    30054 1rwq:A (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    PDBbind: -logKd/Ki=10.00, IC50=0.1nM
    BindingDB: IC50=0.1nM
    30055 1rwq:B (2.2) BS01 5AP 3.4.14.5 GO:0001618 ... P27487 15006388 MOAD: ic50=0.0001uM
    BindingDB: IC50=0.1nM
    30056 1rwt:A (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30057 1rwt:A (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    30058 1rwt:A (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    30059 1rwt:A (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30060 1rwt:A (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    30061 1rwt:A (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    30062 1rwt:A (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30063 1rwt:A (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30064 1rwt:A (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30065 1rwt:A (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    30066 1rwt:A (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    30067 1rwt:A (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30068 1rwt:A (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30069 1rwt:A (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30070 1rwt:B (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30071 1rwt:B (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    30072 1rwt:B (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    30073 1rwt:B (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30074 1rwt:B (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    30075 1rwt:B (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    30076 1rwt:B (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30077 1rwt:B (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30078 1rwt:B (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30079 1rwt:B (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    30080 1rwt:B (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    30081 1rwt:B (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30082 1rwt:B (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30083 1rwt:B (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30084 1rwt:B (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    30085 1rwt:B (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    30086 1rwt:B (2.72) BS17 CHL ? GO:0009765 ... P12333 15029188
    30087 1rwt:C (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30088 1rwt:C (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    30089 1rwt:C (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    30090 1rwt:C (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30091 1rwt:C (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    30092 1rwt:C (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    30093 1rwt:C (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30094 1rwt:C (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30095 1rwt:C (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30096 1rwt:C (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    30097 1rwt:C (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    30098 1rwt:C (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30099 1rwt:C (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30100 1rwt:C (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30101 1rwt:C (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    30102 1rwt:C (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    30103 1rwt:D (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30104 1rwt:D (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    30105 1rwt:D (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    30106 1rwt:D (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30107 1rwt:D (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    30108 1rwt:D (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    30109 1rwt:D (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30110 1rwt:D (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30111 1rwt:D (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30112 1rwt:D (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    30113 1rwt:D (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    30114 1rwt:D (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30115 1rwt:D (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30116 1rwt:D (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30117 1rwt:D (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    30118 1rwt:D (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    30119 1rwt:E (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30120 1rwt:E (2.72) BS02 CLA ? GO:0009765 ... P12333 15029188
    30121 1rwt:E (2.72) BS03 CLA ? GO:0009765 ... P12333 15029188
    30122 1rwt:E (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30123 1rwt:E (2.72) BS05 CHL ? GO:0009765 ... P12333 15029188
    30124 1rwt:E (2.72) BS06 CHL ? GO:0009765 ... P12333 15029188
    30125 1rwt:E (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30126 1rwt:E (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30127 1rwt:E (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30128 1rwt:E (2.72) BS10 CLA ? GO:0009765 ... P12333 15029188
    30129 1rwt:E (2.72) BS11 CLA ? GO:0009765 ... P12333 15029188
    30130 1rwt:E (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30131 1rwt:E (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30132 1rwt:E (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30133 1rwt:E (2.72) BS15 CHL ? GO:0009765 ... P12333 15029188
    30134 1rwt:E (2.72) BS16 CHL ? GO:0009765 ... P12333 15029188
    30135 1rwt:F (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30136 1rwt:F (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    30137 1rwt:F (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    30138 1rwt:F (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30139 1rwt:F (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    30140 1rwt:F (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    30141 1rwt:F (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30142 1rwt:F (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30143 1rwt:F (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30144 1rwt:F (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    30145 1rwt:F (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    30146 1rwt:F (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30147 1rwt:F (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30148 1rwt:F (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30149 1rwt:F (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    30150 1rwt:F (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    30151 1rwt:G (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30152 1rwt:G (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    30153 1rwt:G (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    30154 1rwt:G (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30155 1rwt:G (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    30156 1rwt:G (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    30157 1rwt:G (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30158 1rwt:G (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30159 1rwt:G (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30160 1rwt:G (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    30161 1rwt:G (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    30162 1rwt:G (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30163 1rwt:G (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30164 1rwt:G (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30165 1rwt:G (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    30166 1rwt:G (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    30167 1rwt:H (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30168 1rwt:H (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    30169 1rwt:H (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    30170 1rwt:H (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30171 1rwt:H (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    30172 1rwt:H (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    30173 1rwt:H (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30174 1rwt:H (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30175 1rwt:H (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30176 1rwt:H (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    30177 1rwt:H (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    30178 1rwt:H (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30179 1rwt:H (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30180 1rwt:H (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30181 1rwt:H (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    30182 1rwt:H (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    30183 1rwt:I (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30184 1rwt:I (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    30185 1rwt:I (2.72) BS03 CHL ? GO:0009765 ... P12333 15029188
    30186 1rwt:I (2.72) BS04 CLA ? GO:0009765 ... P12333 15029188
    30187 1rwt:I (2.72) BS05 CLA ? GO:0009765 ... P12333 15029188
    30188 1rwt:I (2.72) BS06 CLA ? GO:0009765 ... P12333 15029188
    30189 1rwt:I (2.72) BS07 CHL ? GO:0009765 ... P12333 15029188
    30190 1rwt:I (2.72) BS08 CHL ? GO:0009765 ... P12333 15029188
    30191 1rwt:I (2.72) BS09 CHL ? GO:0009765 ... P12333 15029188
    30192 1rwt:I (2.72) BS10 CHL ? GO:0009765 ... P12333 15029188
    30193 1rwt:I (2.72) BS11 CHL ? GO:0009765 ... P12333 15029188
    30194 1rwt:I (2.72) BS12 CLA ? GO:0009765 ... P12333 15029188
    30195 1rwt:I (2.72) BS13 CLA ? GO:0009765 ... P12333 15029188
    30196 1rwt:I (2.72) BS14 CLA ? GO:0009765 ... P12333 15029188
    30197 1rwt:I (2.72) BS15 CLA ? GO:0009765 ... P12333 15029188
    30198 1rwt:I (2.72) BS16 CLA ? GO:0009765 ... P12333 15029188
    30199 1rwt:J (2.72) BS01 CHL ? GO:0009765 ... P12333 15029188
    30200 1rwt:J (2.72) BS02 CHL ? GO:0009765 ... P12333 15029188
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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