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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    28401 1qr6:B (2.1) BS02 NAD 1.1.1.38 GO:0004470 ... P23368 10467136
    28402 1qr7:A (2.6) BS01 PB 2.5.1.54 GO:0003849 ... P0AB91 10425687
    28403 1qr7:A (2.6) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 10425687
    28404 1qr7:B (2.6) BS01 PB 2.5.1.54 GO:0003849 ... P0AB91 10425687
    28405 1qr7:B (2.6) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 10425687
    28406 1qr7:C (2.6) BS01 PB 2.5.1.54 GO:0003849 ... P0AB91 10425687
    28407 1qr7:C (2.6) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 10425687
    28408 1qr7:D (2.6) BS01 PB 2.5.1.54 GO:0003849 ... P0AB91 10425687
    28409 1qr7:D (2.6) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 10425687
    28410 1qra:A (1.6) BS01 MG 3.6.5.2 GO:0003924 ... P01112 10574788
    28411 1qra:A (1.6) BS02 GTP 3.6.5.2 GO:0003924 ... P01112 10574788
    28412 1qrd:A (2.4) BS01 FAD 1.6.5.2 GO:0000209 ... P05982 7568029
    28413 1qrd:A (2.4) BS02 CBD 1.6.5.2 GO:0000209 ... P05982 7568029
    28414 1qrd:A (2.4) BS03 DQN 1.6.5.2 GO:0000209 ... P05982 7568029
    28415 1qrd:B (2.4) BS01 FAD 1.6.5.2 GO:0000209 ... P05982 7568029
    28416 1qrd:B (2.4) BS02 DQN 1.6.5.2 GO:0000209 ... P05982 7568029
    28417 1qrf:A (1.55) BS01 CO 4.2.1.1 GO:0004089 ... P40881 10924115
    28418 1qrg:A (1.72) BS01 ZN 4.2.1.1 GO:0004089 ... P40881 10924115
    28419 1qrk:A (2.5) BS01 SR 2.3.2.13 GO:0003810 ... P00488 9988734
    28420 1qrk:B (2.5) BS01 SR 2.3.2.13 GO:0003810 ... P00488 9988734
    28421 1qrm:A (1.95) BS01 ZN 4.2.1.1 GO:0004089 ... P40881 10924115
    28422 1qrq:A (2.8) BS01 NDP 1.1.1.- GO:0005249 ... P62483 10399921
    28423 1qrq:B (2.8) BS01 NDP 1.1.1.- GO:0005249 ... P62483 10399921
    28424 1qrq:C (2.8) BS01 NDP 1.1.1.- GO:0005249 ... P62483 10399921
    28425 1qrq:D (2.8) BS01 NDP 1.1.1.- GO:0005249 ... P62483 10399921
    28426 1qrs:A (2.6) BS01 rna 6.1.1.18 GO:0000166 ... P00962 8942633
    28427 1qrs:A (2.6) BS02 ATP 6.1.1.18 GO:0000166 ... P00962 8942633
    28428 1qrt:A (2.7) BS01 rna 6.1.1.18 GO:0000166 ... P00962 8942633
    28429 1qrt:A (2.7) BS02 ATP 6.1.1.18 GO:0000166 ... P00962 8942633
    28430 1qru:A (3.0) BS01 rna 6.1.1.18 GO:0000166 ... P00962 8942633
    28431 1qru:A (3.0) BS02 ATP 6.1.1.18 GO:0000166 ... P00962 8942633
    28432 1qs2:A (2.7) BS01 NAD 2.4.2.30 GO:0005576 ... Q844J9 10504727
    28433 1qsg:A (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28434 1qsg:A (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28435 1qsg:A (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    28436 1qsg:B (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28437 1qsg:B (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28438 1qsg:B (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    28439 1qsg:C (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28440 1qsg:C (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28441 1qsg:C (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    28442 1qsg:D (1.75) BS01 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28443 1qsg:D (1.75) BS02 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    28444 1qsg:E (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28445 1qsg:E (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28446 1qsg:E (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    28447 1qsg:F (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28448 1qsg:F (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28449 1qsg:F (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    28450 1qsg:G (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28451 1qsg:G (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28452 1qsg:G (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    28453 1qsg:H (1.75) BS01 GLC 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28454 1qsg:H (1.75) BS02 NAD 1.3.1.9 GO:0004318 ... P0AEK4 10398587
    28455 1qsg:H (1.75) BS03 TCL 1.3.1.9 GO:0004318 ... P0AEK4 10398587 BindingDB: IC50=430nM
    28456 1qsh:A (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    28457 1qsh:B (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    28458 1qsh:C (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    28459 1qsh:D (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    28460 1qsi:A (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    28461 1qsi:A (1.7) BS02 CMO ? GO:0004601 ... P69905 10512707
    28462 1qsi:B (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    28463 1qsi:C (1.7) BS01 HEM ? GO:0004601 ... P69905 10512707
    28464 1qsi:C (1.7) BS02 CMO ? GO:0004601 ... P69905 10512707
    28465 1qsi:D (1.7) BS01 HEG ? GO:0004601 ... P68871 10512707
    28466 1qsm:A (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    28467 1qsm:B (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    28468 1qsm:C (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    28469 1qsm:D (2.4) BS01 ACO 2.3.1.48 GO:0004402 ... Q06592 10600387
    28470 1qt1:A (1.85) BS01 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    28471 1qt1:A (1.85) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    28472 1qt1:B (1.85) BS01 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    28473 1qt1:B (1.85) BS02 CO 5.3.1.5 GO:0000287 ... P50910 10666592
    28474 1qti:A (2.5) BS01 GNT 3.1.1.7 GO:0001507 ... P04058 11119642 PDBbind: -logKd/Ki=6.44, IC50=0.36uM
    BindingDB: IC50=1069nM, Ki=1.9e+2nM
    28475 1qtk:A (2.03) BS01 KR 3.2.1.17 GO:0003796 ... P00698 9443341
    28476 1qtq:A (2.25) BS01 rna 6.1.1.18 GO:0000166 ... P00962 9562563 PDBbind: Ki=1.32uM
    28477 1qtq:A (2.25) BS02 QSI 6.1.1.18 GO:0000166 ... P00962 9562563
    28478 1qtw:A (1.02) BS01 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28479 1qtw:A (1.02) BS02 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28480 1qtw:A (1.02) BS03 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28481 1qu2:A (2.2) BS01 rna 6.1.1.5 GO:0000049 ... P41972 10446055
    28482 1qu2:A (2.2) BS02 ZN 6.1.1.5 GO:0000049 ... P41972 10446055
    28483 1qu2:A (2.2) BS03 MRC 6.1.1.5 GO:0000049 ... P41972 10446055 BindingDB: IC50=20000nM
    28484 1qu3:A (2.9) BS01 rna 6.1.1.5 GO:0000049 ... P41972 10446055
    28485 1qu3:A (2.9) BS02 MRC 6.1.1.5 GO:0000049 ... P41972 10446055 BindingDB: IC50=20000nM
    28486 1qu4:A (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    28487 1qu4:B (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    28488 1qu4:C (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    28489 1qu4:D (2.9) BS01 PLP 4.1.1.17 GO:0003824 ... P07805 10563800
    28490 1qua:A (2.2) BS01 ZN 3.4.24.- GO:0004222 ... P60244 10531480
    28491 1qui:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    28492 1quj:A (1.9) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    28493 1quk:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    28494 1qul:A (1.7) BS01 PO4 ? GO:0006817 ... P0AG82 8652549
    28495 1qum:A (1.55) BS01 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28496 1qum:A (1.55) BS02 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28497 1qum:A (1.55) BS03 dna 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28498 1qum:A (1.55) BS04 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28499 1qum:A (1.55) BS05 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28500 1qum:A (1.55) BS06 ZN 3.1.21.2 GO:0003677 ... P0A6C1 10458614
    28501 1qv6:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    28502 1qv6:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    28503 1qv6:A (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    28504 1qv6:A (1.8) BS04 24B 1.1.1.1 GO:0004022 ... P00327 15023053
    28505 1qv6:B (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    28506 1qv6:B (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    28507 1qv6:B (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    28508 1qv6:B (1.8) BS04 24B 1.1.1.1 GO:0004022 ... P00327 15023053
    28509 1qv7:A (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    28510 1qv7:A (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    28511 1qv7:A (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    28512 1qv7:A (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 15023053
    28513 1qv7:B (1.8) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    28514 1qv7:B (1.8) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 15023053
    28515 1qv7:B (1.8) BS03 NAD 1.1.1.1 GO:0004022 ... P00327 15023053
    28516 1qv7:B (1.8) BS04 DFB 1.1.1.1 GO:0004022 ... P00327 15023053
    28517 1qvf:1 (3.1) BS01 rna ? GO:0003735 ... P22452 14561884
    28518 1qvf:2 (3.1) BS01 rna ? GO:0000049 ... P32411 14561884
    28519 1qvf:2 (3.1) BS02 rna ? GO:0000049 ... P32411 14561884
    28520 1qvf:2 (3.1) BS03 MG ? GO:0000049 ... P32411 14561884
    28521 1qvf:A (3.1) BS01 rna ? GO:0002181 ... P20276 14561884
    28522 1qvf:A (3.1) BS02 MG ? GO:0002181 ... P20276 14561884
    28523 1qvf:B (3.1) BS01 rna ? GO:0003723 ... P20279 14561884
    28524 1qvf:C (3.1) BS01 rna ? GO:0003723 ... P12735 14561884
    28525 1qvf:D (3.1) BS01 rna ? GO:0000049 ... P14124 14561884
    28526 1qvf:D (3.1) BS02 rna ? GO:0000049 ... P14124 14561884
    28527 1qvf:E (3.1) BS01 rna ? GO:0002181 ... P14135 14561884
    28528 1qvf:F (3.1) BS01 rna ? GO:0001682 ... P12743 14561884
    28529 1qvf:H (3.1) BS01 rna ? GO:0000027 ... P60617 14561884
    28530 1qvf:I (3.1) BS01 rna ? GO:0003729 ... P29198 14561884
    28531 1qvf:J (3.1) BS01 rna ? GO:0003735 ... P22450 14561884
    28532 1qvf:K (3.1) BS01 rna ? GO:0003735 ... P12737 14561884
    28533 1qvf:L (3.1) BS01 rna ? GO:0002181 ... P60618 14561884
    28534 1qvf:M (3.1) BS01 rna ? GO:0000027 ... P14123 14561884
    28535 1qvf:M (3.1) BS02 rna ? GO:0000027 ... P14123 14561884
    28536 1qvf:N (3.1) BS01 rna ? GO:0003723 ... P12733 14561884
    28537 1qvf:O (3.1) BS01 rna ? GO:0003723 ... P14119 14561884
    28538 1qvf:P (3.1) BS01 rna ? GO:0003735 ... P12734 14561884
    28539 1qvf:P (3.1) BS02 rna ? GO:0003735 ... P12734 14561884
    28540 1qvf:Q (3.1) BS01 rna ? GO:0002181 ... P10970 14561884
    28541 1qvf:R (3.1) BS01 rna ? GO:0000027 ... P12732 14561884
    28542 1qvf:S (3.1) BS01 rna ? GO:0002181 ... P10972 14561884
    28543 1qvf:S (3.1) BS02 MG ? GO:0002181 ... P10972 14561884
    28544 1qvf:T (3.1) BS01 rna ? GO:0003735 ... P14116 14561884
    28545 1qvf:U (3.1) BS01 rna ? GO:0003735 ... P10971 14561884
    28546 1qvf:V (3.1) BS01 rna ? GO:0000463 ... P14121 14561884
    28547 1qvf:V (3.1) BS02 rna ? GO:0000463 ... P14121 14561884
    28548 1qvf:W (3.1) BS01 rna ? GO:0002181 ... P18138 14561884
    28549 1qvf:X (3.1) BS01 rna ? GO:0000166 ... P12736 14561884
    28550 1qvf:X (3.1) BS02 MG ? GO:0000166 ... P12736 14561884
    28551 1qvf:Y (3.1) BS01 rna ? GO:0003735 ... P60619 14561884
    28552 1qvf:Z (3.1) BS01 rna ? GO:0003723 ... P32410 14561884
    28553 1qvg:1 (2.9) BS01 rna ? GO:0003735 ... P22452 14561884
    28554 1qvg:2 (2.9) BS01 rna ? GO:0000049 ... P32411 14561884
    28555 1qvg:2 (2.9) BS02 rna ? GO:0000049 ... P32411 14561884
    28556 1qvg:2 (2.9) BS03 MG ? GO:0000049 ... P32411 14561884
    28557 1qvg:A (2.9) BS01 rna ? GO:0002181 ... P20276 14561884
    28558 1qvg:B (2.9) BS01 rna ? GO:0003723 ... P20279 14561884
    28559 1qvg:C (2.9) BS01 rna ? GO:0003723 ... P12735 14561884
    28560 1qvg:D (2.9) BS01 rna ? GO:0000049 ... P14124 14561884
    28561 1qvg:D (2.9) BS02 rna ? GO:0000049 ... P14124 14561884
    28562 1qvg:E (2.9) BS01 rna ? GO:0002181 ... P14135 14561884
    28563 1qvg:F (2.9) BS01 rna ? GO:0001682 ... P12743 14561884
    28564 1qvg:H (2.9) BS01 rna ? GO:0000027 ... P60617 14561884
    28565 1qvg:I (2.9) BS01 rna ? GO:0003729 ... P29198 14561884
    28566 1qvg:J (2.9) BS01 rna ? GO:0003735 ... P22450 14561884
    28567 1qvg:K (2.9) BS01 rna ? GO:0003735 ... P12737 14561884
    28568 1qvg:L (2.9) BS01 rna ? GO:0002181 ... P60618 14561884
    28569 1qvg:M (2.9) BS01 rna ? GO:0000027 ... P14123 14561884
    28570 1qvg:M (2.9) BS02 rna ? GO:0000027 ... P14123 14561884
    28571 1qvg:N (2.9) BS01 rna ? GO:0003723 ... P12733 14561884
    28572 1qvg:O (2.9) BS01 rna ? GO:0003723 ... P14119 14561884
    28573 1qvg:P (2.9) BS01 rna ? GO:0003735 ... P12734 14561884
    28574 1qvg:P (2.9) BS02 rna ? GO:0003735 ... P12734 14561884
    28575 1qvg:Q (2.9) BS01 rna ? GO:0002181 ... P10970 14561884
    28576 1qvg:R (2.9) BS01 rna ? GO:0000027 ... P12732 14561884
    28577 1qvg:S (2.9) BS01 rna ? GO:0002181 ... P10972 14561884
    28578 1qvg:S (2.9) BS02 MG ? GO:0002181 ... P10972 14561884
    28579 1qvg:T (2.9) BS01 rna ? GO:0003735 ... P14116 14561884
    28580 1qvg:U (2.9) BS01 rna ? GO:0003735 ... P10971 14561884
    28581 1qvg:V (2.9) BS01 rna ? GO:0000463 ... P14121 14561884
    28582 1qvg:V (2.9) BS02 rna ? GO:0000463 ... P14121 14561884
    28583 1qvg:W (2.9) BS01 rna ? GO:0002181 ... P18138 14561884
    28584 1qvg:X (2.9) BS01 rna ? GO:0000166 ... P12736 14561884
    28585 1qvg:X (2.9) BS02 MG ? GO:0000166 ... P12736 14561884
    28586 1qvg:Y (2.9) BS01 rna ? GO:0003735 ... P60619 14561884
    28587 1qvg:Z (2.9) BS01 rna ? GO:0003723 ... P32410 14561884
    28588 1qvi:A (2.54) BS01 MG ? GO:0003774 ... P24733 14656445
    28589 1qvi:A (2.54) BS02 ADP ? GO:0003774 ... P24733 14656445
    28590 1qvi:Y (2.54) BS01 MG ? GO:0005509 ... P13543 14656445
    28591 1qvi:Z (2.54) BS01 CA ? GO:0005509 ... P07291 14656445
    28592 1qvn:A (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    28593 1qvn:B (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    28594 1qvn:C (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    28595 1qvn:C (2.7) BS02 FRI ? GO:0002250 ... P60568 17032757
    28596 1qvn:D (2.7) BS01 FRI ? GO:0002250 ... P60568 17032757
    28597 1qvr:A (3.0) BS01 ANP ? GO:0005515 ... Q9RA63 14567920
    28598 1qvr:A (3.0) BS02 ANP ? GO:0005515 ... Q9RA63 14567920
    28599 1qvr:B (3.0) BS01 ANP ? GO:0005515 ... Q9RA63 14567920
    28600 1qvr:B (3.0) BS02 ANP ? GO:0005515 ... Q9RA63 14567920

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218