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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    27201 1q4v:B (2.0) BS01 peptide ? GO:0005179 ... P01308 14596591
    27202 1q4v:D (2.0) BS01 peptide ? GO:0005179 ... P01308 14596591
    27203 1q4w:A (1.93) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    27204 1q4w:A (1.93) BS02 DQU 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=0.35uM
    PDBbind: -logKd/Ki=6.46, Ki=0.35uM
    27205 1q51:A (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27206 1q51:B (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27207 1q51:C (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27208 1q51:D (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27209 1q51:E (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27210 1q51:F (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27211 1q51:G (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27212 1q51:H (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27213 1q51:I (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27214 1q51:J (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27215 1q51:K (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27216 1q51:L (2.3) BS01 CAA 4.1.3.36 GO:0005886 ... P9WNP5 12909628
    27217 1q54:A (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    27218 1q54:A (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    27219 1q54:A (1.93) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 12630859 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    27220 1q54:B (1.93) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 12630859
    27221 1q54:B (1.93) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 12630859
    27222 1q54:B (1.93) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 12630859 MOAD: Ki=1.4uM
    27223 1q55:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27224 1q55:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27225 1q55:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27226 1q55:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27227 1q55:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27228 1q55:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27229 1q55:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27230 1q55:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27231 1q55:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27232 1q55:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27233 1q55:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27234 1q55:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27235 1q55:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27236 1q55:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27237 1q55:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27238 1q55:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27239 1q55:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27240 1q55:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27241 1q55:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27242 1q55:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27243 1q55:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27244 1q55:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27245 1q55:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27246 1q55:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27247 1q55:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27248 1q55:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27249 1q55:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27250 1q55:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27251 1q55:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27252 1q55:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27253 1q55:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27254 1q55:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27255 1q55:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27256 1q55:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27257 1q55:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27258 1q55:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27259 1q55:D (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27260 1q55:D (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27261 1q55:D (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27262 1q55:D (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27263 1q55:D (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27264 1q55:D (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27265 1q55:D (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27266 1q55:D (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27267 1q55:D (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27268 1q55:D (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27269 1q55:D (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27270 1q55:D (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27271 1q5a:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27272 1q5a:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27273 1q5a:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27274 1q5a:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27275 1q5a:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27276 1q5a:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27277 1q5a:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27278 1q5a:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27279 1q5a:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27280 1q5a:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27281 1q5a:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27282 1q5a:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27283 1q5a:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27284 1q5a:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27285 1q5a:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27286 1q5a:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27287 1q5a:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27288 1q5a:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27289 1q5a:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27290 1q5a:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27291 1q5a:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27292 1q5a:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27293 1q5a:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27294 1q5a:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27295 1q5b:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27296 1q5b:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27297 1q5b:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27298 1q5b:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27299 1q5b:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27300 1q5b:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27301 1q5b:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27302 1q5b:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27303 1q5b:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27304 1q5b:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27305 1q5b:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27306 1q5b:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27307 1q5b:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27308 1q5b:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27309 1q5b:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27310 1q5b:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27311 1q5b:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27312 1q5b:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27313 1q5b:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27314 1q5b:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27315 1q5b:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27316 1q5b:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27317 1q5b:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27318 1q5b:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27319 1q5b:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27320 1q5b:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27321 1q5b:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27322 1q5b:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27323 1q5b:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27324 1q5b:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27325 1q5b:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27326 1q5b:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27327 1q5b:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27328 1q5b:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27329 1q5b:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27330 1q5b:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27331 1q5c:A (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27332 1q5c:A (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27333 1q5c:A (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27334 1q5c:A (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27335 1q5c:A (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27336 1q5c:A (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27337 1q5c:A (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27338 1q5c:A (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27339 1q5c:A (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27340 1q5c:A (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27341 1q5c:A (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27342 1q5c:A (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27343 1q5c:B (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27344 1q5c:B (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27345 1q5c:B (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27346 1q5c:B (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27347 1q5c:B (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27348 1q5c:B (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27349 1q5c:B (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27350 1q5c:B (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27351 1q5c:B (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27352 1q5c:B (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27353 1q5c:B (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27354 1q5c:B (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27355 1q5c:C (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27356 1q5c:C (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27357 1q5c:C (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27358 1q5c:C (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27359 1q5c:C (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27360 1q5c:C (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27361 1q5c:C (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27362 1q5c:C (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27363 1q5c:C (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27364 1q5c:C (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27365 1q5c:C (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27366 1q5c:C (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27367 1q5c:D (30.0) BS01 CA N/A GO:0005509 ... N/A 14526082
    27368 1q5c:D (30.0) BS02 CA N/A GO:0005509 ... N/A 14526082
    27369 1q5c:D (30.0) BS03 CA N/A GO:0005509 ... N/A 14526082
    27370 1q5c:D (30.0) BS04 CA N/A GO:0005509 ... N/A 14526082
    27371 1q5c:D (30.0) BS05 CA N/A GO:0005509 ... N/A 14526082
    27372 1q5c:D (30.0) BS06 CA N/A GO:0005509 ... N/A 14526082
    27373 1q5c:D (30.0) BS07 CA N/A GO:0005509 ... N/A 14526082
    27374 1q5c:D (30.0) BS08 CA N/A GO:0005509 ... N/A 14526082
    27375 1q5c:D (30.0) BS09 CA N/A GO:0005509 ... N/A 14526082
    27376 1q5c:D (30.0) BS10 CA N/A GO:0005509 ... N/A 14526082
    27377 1q5c:D (30.0) BS11 CA N/A GO:0005509 ... N/A 14526082
    27378 1q5c:D (30.0) BS12 CA N/A GO:0005509 ... N/A 14526082
    27379 1q5d:A (1.93) BS01 HEM 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    27380 1q5d:A (1.93) BS02 EPB 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    27381 1q5e:A (2.65) BS01 HEM 1.14.15.- GO:0004497 ... Q9KIZ4 12933799
    27382 1q5i:A (2.3) BS01 RET ? GO:0005216 ... P02945 14732697
    27383 1q5i:B (2.3) BS01 RET ? GO:0005216 ... P02945 14732697
    27384 1q5j:A (2.1) BS01 RET ? GO:0005216 ... P02945 14732697
    27385 1q5j:B (2.1) BS01 RET ? GO:0005216 ... P02945 14732697
    27386 1q5k:A (1.94) BS01 TMU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 12928438 MOAD: Ki=38nM
    PDBbind: -logKd/Ki=7.42, Ki=38nM
    BindingDB: IC50=104nM, Ki=38nM
    27387 1q5k:B (1.94) BS01 TMU 2.7.11.1
    2.7.11.26    		 GO:0001837 ... P49841 12928438 MOAD: Ki=38nM
    BindingDB: IC50=104nM, Ki=38nM
    27388 1q5m:A (1.32) BS01 NDP 1.1.1.149
    1.1.1.189    		 GO:0001516 ... P80508 15123423
    27389 1q5m:B (1.32) BS01 NDP 1.1.1.149
    1.1.1.189    		 GO:0001516 ... P80508 15123423
    27390 1q5p:A (1.6) BS01 CA 3.4.21.62 GO:0004252 ... P29600 12962477
    27391 1q5p:A (1.6) BS02 CA 3.4.21.62 GO:0004252 ... P29600 12962477
    27392 1q61:A (2.1) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 12798691
    27393 1q61:A (2.1) BS02 MG8 2.7.11.11 GO:0001669 ... P00517 12798691
    27394 1q62:A (2.3) BS01 peptide 2.7.11.11 GO:0001669 ... P00517 12798691
    27395 1q63:A (1.85) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    27396 1q63:A (1.85) BS02 AIQ 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=1.4uM
    PDBbind: -logKd/Ki=5.85, Ki=1.4uM
    27397 1q65:A (2.1) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    27398 1q65:A (2.1) BS02 BHB 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=3.5uM
    PDBbind: -logKd/Ki=5.46, Ki=3.5uM
    27399 1q66:A (1.75) BS01 ZN 2.4.2.29 GO:0002099 ... P28720 15050823
    27400 1q66:A (1.75) BS02 KMB 2.4.2.29 GO:0002099 ... P28720 15050823 MOAD: Ki=1.7uM
    PDBbind: -logKd/Ki=5.77, Ki=1.7uM
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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