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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    26601 1ppm:E (1.7) BS01 0P1 3.4.23.20 GO:0004190 ... P00798 1606144 MOAD: Ki=1600nM
    PDBbind: -logKd/Ki=5.80, Ki=1600nM
    26602 1ppr:M (2.0) BS01 CLA ? GO:0016168 ... P80484 8650577
    26603 1ppr:M (2.0) BS02 CLA ? GO:0016168 ... P80484 8650577
    26604 1ppr:M (2.0) BS03 PID ? GO:0016168 ... P80484 8650577
    26605 1ppr:M (2.0) BS04 PID ? GO:0016168 ... P80484 8650577
    26606 1ppr:M (2.0) BS05 PID ? GO:0016168 ... P80484 8650577
    26607 1ppr:M (2.0) BS06 PID ? GO:0016168 ... P80484 8650577
    26608 1ppr:M (2.0) BS07 PID ? GO:0016168 ... P80484 8650577
    26609 1ppr:M (2.0) BS08 PID ? GO:0016168 ... P80484 8650577
    26610 1ppr:M (2.0) BS09 PID ? GO:0016168 ... P80484 8650577
    26611 1ppr:M (2.0) BS10 PID ? GO:0016168 ... P80484 8650577
    26612 1ppr:N (2.0) BS01 CLA ? GO:0016168 ... P80484 8650577
    26613 1ppr:N (2.0) BS02 CLA ? GO:0016168 ... P80484 8650577
    26614 1ppr:N (2.0) BS03 PID ? GO:0016168 ... P80484 8650577
    26615 1ppr:N (2.0) BS04 PID ? GO:0016168 ... P80484 8650577
    26616 1ppr:N (2.0) BS05 PID ? GO:0016168 ... P80484 8650577
    26617 1ppr:N (2.0) BS06 PID ? GO:0016168 ... P80484 8650577
    26618 1ppr:N (2.0) BS07 PID ? GO:0016168 ... P80484 8650577
    26619 1ppr:N (2.0) BS08 PID ? GO:0016168 ... P80484 8650577
    26620 1ppr:N (2.0) BS09 PID ? GO:0016168 ... P80484 8650577
    26621 1ppr:N (2.0) BS10 PID ? GO:0016168 ... P80484 8650577
    26622 1ppr:O (2.0) BS01 CLA ? GO:0016168 ... P80484 8650577
    26623 1ppr:O (2.0) BS02 CLA ? GO:0016168 ... P80484 8650577
    26624 1ppr:O (2.0) BS03 PID ? GO:0016168 ... P80484 8650577
    26625 1ppr:O (2.0) BS04 PID ? GO:0016168 ... P80484 8650577
    26626 1ppr:O (2.0) BS05 PID ? GO:0016168 ... P80484 8650577
    26627 1ppr:O (2.0) BS06 PID ? GO:0016168 ... P80484 8650577
    26628 1ppr:O (2.0) BS07 PID ? GO:0016168 ... P80484 8650577
    26629 1ppr:O (2.0) BS08 PID ? GO:0016168 ... P80484 8650577
    26630 1ppr:O (2.0) BS09 PID ? GO:0016168 ... P80484 8650577
    26631 1ppr:O (2.0) BS10 PID ? GO:0016168 ... P80484 8650577
    26632 1ppv:A (1.7) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    26633 1ppv:A (1.7) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    26634 1ppv:A (1.7) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 15643873
    26635 1ppv:B (1.7) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    26636 1ppv:B (1.7) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    26637 1ppv:B (1.7) BS03 BHI 5.3.3.2 GO:0000287 ... Q46822 15643873
    26638 1ppw:A (2.21) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    26639 1ppw:A (2.21) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    26640 1ppw:A (2.21) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 15643873 MOAD: ic50~50uM
    PDBbind: -logKd/Ki=4.30, IC50=50uM
    26641 1ppw:B (2.21) BS01 MN 5.3.3.2 GO:0000287 ... Q46822 15643873
    26642 1ppw:B (2.21) BS02 MG 5.3.3.2 GO:0000287 ... Q46822 15643873
    26643 1ppw:B (2.21) BS03 EIP 5.3.3.2 GO:0000287 ... Q46822 15643873 MOAD: ic50~50uM
    26644 1pq2:A (2.7) BS01 HEM 1.14.14.1 GO:0002933 ... P10632 14676196
    26645 1pq2:A (2.7) BS02 PLM 1.14.14.1 GO:0002933 ... P10632 14676196
    26646 1pq2:B (2.7) BS01 PLM 1.14.14.1 GO:0002933 ... P10632 14676196
    26647 1pq2:B (2.7) BS02 HEM 1.14.14.1 GO:0002933 ... P10632 14676196
    26648 1pq5:A (0.85) BS01 ARG 3.4.21.4 GO:0004252 ... P35049 12937176
    26649 1pq7:A (0.8) BS01 ARG 3.4.21.4 GO:0004252 ... P35049 12937176
    26650 1pq8:A (1.0) BS01 peptide 3.4.21.4 GO:0004252 ... P35049 12937176
    26651 1pq8:A (1.0) BS02 LYS 3.4.21.4 GO:0004252 ... P35049 12937176
    26652 1pr0:A (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26653 1pr0:A (2.2) BS02 NOS 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26654 1pr0:B (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26655 1pr0:B (2.2) BS02 NOS 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26656 1pr0:C (2.2) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26657 1pr0:C (2.2) BS02 NOS 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26658 1pr1:A (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26659 1pr1:A (2.3) BS02 FMB 2.4.2.1 GO:0003824 ... P0ABP9 12937174 MOAD: Ki=5uM
    PDBbind: -logKd/Ki=5.30, Ki=5uM
    26660 1pr1:B (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26661 1pr1:B (2.3) BS02 FMB 2.4.2.1 GO:0003824 ... P0ABP9 12937174 MOAD: Ki=5uM
    26662 1pr1:C (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26663 1pr1:C (2.3) BS02 FMB 2.4.2.1 GO:0003824 ... P0ABP9 12937174 MOAD: Ki=5uM
    26664 1pr2:A (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26665 1pr2:A (2.3) BS02 MDR 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26666 1pr2:B (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26667 1pr2:B (2.3) BS02 MDR 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26668 1pr2:C (2.3) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26669 1pr2:C (2.3) BS02 MDR 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26670 1pr4:A (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26671 1pr4:A (2.4) BS02 MTP 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26672 1pr4:B (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26673 1pr4:B (2.4) BS02 MTP 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26674 1pr4:C (2.4) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26675 1pr4:C (2.4) BS02 MTP 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26676 1pr5:A (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26677 1pr5:A (2.5) BS02 TBN 2.4.2.1 GO:0003824 ... P0ABP9 12937174 MOAD: Ki=120uM
    PDBbind: -logKd/Ki=3.92, Ki=120uM
    26678 1pr5:B (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26679 1pr5:B (2.5) BS02 TBN 2.4.2.1 GO:0003824 ... P0ABP9 12937174 MOAD: Ki=120uM
    26680 1pr5:C (2.5) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26681 1pr5:C (2.5) BS02 TBN 2.4.2.1 GO:0003824 ... P0ABP9 12937174 MOAD: Ki=120uM
    26682 1pr6:A (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26683 1pr6:A (2.1) BS02 XYA 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26684 1pr6:B (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26685 1pr6:B (2.1) BS02 XYA 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26686 1pr6:C (2.1) BS01 PO4 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26687 1pr6:C (2.1) BS02 XYA 2.4.2.1 GO:0003824 ... P0ABP9 12937174
    26688 1pr9:A (1.96) BS01 NAP 1.1.1.10 GO:0004090 ... Q7Z4W1 15103634
    26689 1pr9:A (1.96) BS02 2HP 1.1.1.10 GO:0004090 ... Q7Z4W1 15103634
    26690 1pr9:B (1.96) BS01 NAP 1.1.1.10 GO:0004090 ... Q7Z4W1 15103634
    26691 1pr9:B (1.96) BS02 2HP 1.1.1.10 GO:0004090 ... Q7Z4W1 15103634
    26692 1prc:C (2.3) BS01 HEC ? GO:0005506 ... P07173 7877166
    26693 1prc:C (2.3) BS02 HEC ? GO:0005506 ... P07173 7877166
    26694 1prc:C (2.3) BS03 HEC ? GO:0005506 ... P07173 7877166
    26695 1prc:C (2.3) BS04 HEC ? GO:0005506 ... P07173 7877166
    26696 1prc:L (2.3) BS01 BCB ? GO:0009772 ... P06009 7877166
    26697 1prc:L (2.3) BS02 BCB ? GO:0009772 ... P06009 7877166
    26698 1prc:L (2.3) BS03 BPB ? GO:0009772 ... P06009 7877166
    26699 1prc:L (2.3) BS04 UQ1 ? GO:0009772 ... P06009 7877166
    26700 1prc:L (2.3) BS05 FE ? GO:0009772 ... P06009 7877166
    26701 1prc:L (2.3) BS06 BCB ? GO:0009772 ... P06009 7877166
    26702 1prc:L (2.3) BS07 BPB ? GO:0009772 ... P06009 7877166
    26703 1prc:L (2.3) BS08 MQ7 ? GO:0009772 ... P06009 7877166
    26704 1prc:M (2.3) BS01 BCB ? GO:0009772 ... P06010 7877166
    26705 1prc:M (2.3) BS02 BPB ? GO:0009772 ... P06010 7877166
    26706 1prc:M (2.3) BS03 FE ? GO:0009772 ... P06010 7877166
    26707 1prc:M (2.3) BS04 BCB ? GO:0009772 ... P06010 7877166
    26708 1prc:M (2.3) BS05 BCB ? GO:0009772 ... P06010 7877166
    26709 1prc:M (2.3) BS06 BPB ? GO:0009772 ... P06010 7877166
    26710 1prc:M (2.3) BS07 MQ7 ? GO:0009772 ... P06010 7877166
    26711 1prc:M (2.3) BS08 NS1 ? GO:0009772 ... P06010 7877166
    26712 1prh:A (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8121489
    26713 1prh:B (3.5) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 8121489
    26714 1prn:A (1.96) BS01 C8E ? GO:0006811 ... P39767 7525973
    26715 1prn:A (1.96) BS02 C8E ? GO:0006811 ... P39767 7525973
    26716 1prw:A (1.7) BS01 CA ? GO:0000922 ... P62157 14527397
    26717 1prw:A (1.7) BS02 CA ? GO:0000922 ... P62157 14527397
    26718 1prw:A (1.7) BS03 CA ? GO:0000922 ... P62157 14527397
    26719 1prw:A (1.7) BS04 CA ? GO:0000922 ... P62157 14527397
    26720 1ps0:A (3.01) BS01 ZN 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    26721 1ps0:A (3.01) BS02 NAP 1.1.1.2
    1.6.-.-
    GO:0005575 ... Q04894 15289102
    26722 1ps3:A (1.8) BS01 ZN 3.2.1.114 GO:0000139 ... Q24451 14636047
    26723 1ps3:A (1.8) BS02 KIF 3.2.1.114 GO:0000139 ... Q24451 14636047 MOAD: Ki=5.2mM
    PDBbind: -logKd/Ki=2.28, Ki=5.2mM
    26724 1ps6:A (2.25) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    26725 1ps6:A (2.25) BS02 4TP 1.1.1.262 GO:0000287 ... P19624 12896974
    26726 1ps6:B (2.25) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    26727 1ps7:A (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    26728 1ps7:B (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    26729 1ps7:C (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    26730 1ps7:D (2.47) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    26731 1psb:A (-1.00) BS01 peptide ? GO:0005509 ... P02638 14661952
    26732 1psb:B (-1.00) BS01 peptide ? GO:0005509 ... P02638 14661952
    26733 1psd:A (2.75) BS01 NAD 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    26734 1psd:A (2.75) BS02 SER 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    26735 1psd:B (2.75) BS01 NAD 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    26736 1psd:B (2.75) BS02 SER 1.1.1.399
    1.1.1.95
    GO:0004617 ... P0A9T0 7719856
    26737 1psh:A (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    26738 1psh:B (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    26739 1psh:C (2.3) BS01 CA 3.1.1.4 GO:0004623 ... P15445 8419939
    26740 1psj:A (2.0) BS01 CA 3.1.1.4 GO:0004623 ... P14418 8636969
    26741 1pss:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 8161514
    26742 1pss:L (3.0) BS02 BPH ? GO:0009772 ... P0C0Y8 8161514
    26743 1pss:L (3.0) BS03 U10 ? GO:0009772 ... P0C0Y8 8161514
    26744 1pss:L (3.0) BS04 FE ? GO:0009772 ... P0C0Y8 8161514
    26745 1pss:L (3.0) BS05 BCL ? GO:0009772 ... P0C0Y8 8161514
    26746 1pss:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 8161514
    26747 1pss:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 8161514
    26748 1pss:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 8161514
    26749 1pss:M (3.0) BS01 BPH ? GO:0009772 ... P0C0Y9 8161514
    26750 1pss:M (3.0) BS02 FE ? GO:0009772 ... P0C0Y9 8161514
    26751 1pss:M (3.0) BS03 BCL ? GO:0009772 ... P0C0Y9 8161514
    26752 1pss:M (3.0) BS04 BCL ? GO:0009772 ... P0C0Y9 8161514
    26753 1pss:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 8161514
    26754 1pss:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 8161514
    26755 1pss:M (3.0) BS07 U10 ? GO:0009772 ... P0C0Y9 8161514
    26756 1pss:M (3.0) BS08 CRT ? GO:0009772 ... P0C0Y9 8161514
    26757 1pst:L (3.0) BS01 BCL ? GO:0009772 ... P0C0Y8 8161514
    26758 1pst:L (3.0) BS02 BCL ? GO:0009772 ... P0C0Y8 8161514
    26759 1pst:L (3.0) BS03 BPH ? GO:0009772 ... P0C0Y8 8161514
    26760 1pst:L (3.0) BS04 U10 ? GO:0009772 ... P0C0Y8 8161514
    26761 1pst:L (3.0) BS05 FE ? GO:0009772 ... P0C0Y8 8161514
    26762 1pst:L (3.0) BS06 BCL ? GO:0009772 ... P0C0Y8 8161514
    26763 1pst:L (3.0) BS07 BPH ? GO:0009772 ... P0C0Y8 8161514
    26764 1pst:L (3.0) BS08 U10 ? GO:0009772 ... P0C0Y8 8161514
    26765 1pst:M (3.0) BS01 BCL ? GO:0009772 ... P0C0Y9 8161514
    26766 1pst:M (3.0) BS02 BPH ? GO:0009772 ... P0C0Y9 8161514
    26767 1pst:M (3.0) BS03 U10 ? GO:0009772 ... P0C0Y9 8161514
    26768 1pst:M (3.0) BS04 FE ? GO:0009772 ... P0C0Y9 8161514
    26769 1pst:M (3.0) BS05 BCL ? GO:0009772 ... P0C0Y9 8161514
    26770 1pst:M (3.0) BS06 BPH ? GO:0009772 ... P0C0Y9 8161514
    26771 1pst:M (3.0) BS07 BPH ? GO:0009772 ... P0C0Y9 8161514
    26772 1pst:M (3.0) BS08 U10 ? GO:0009772 ... P0C0Y9 8161514
    26773 1pst:M (3.0) BS09 CRT ? GO:0009772 ... P0C0Y9 8161514
    26774 1pt2:A (2.1) BS01 GLC 2.4.1.10 GO:0005576 ... P05655 14517548
    26775 1pt2:A (2.1) BS02 FRU 2.4.1.10 GO:0005576 ... P05655 14517548
    26776 1pt2:A (2.1) BS03 CA 2.4.1.10 GO:0005576 ... P05655 14517548
    26777 1ptg:A (2.6) BS01 INS 4.6.1.13 GO:0004436 ... P14262 7664726
    26778 1pth:A (3.4) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 7552725
    26779 1pth:A (3.4) BS02 SAL 1.14.99.1 GO:0001516 ... P05979 7552725
    26780 1pth:B (3.4) BS01 HEM 1.14.99.1 GO:0001516 ... P05979 7552725
    26781 1pth:B (3.4) BS02 SAL 1.14.99.1 GO:0001516 ... P05979 7552725
    26782 1ptj:A (2.61) BS01 SND 7.1.1.1 GO:0000166 ... Q2RSB2 12791694
    26783 1ptm:A (1.96) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    26784 1ptm:A (1.96) BS02 PO4 1.1.1.262 GO:0000287 ... P19624 12896974
    26785 1ptm:B (1.96) BS01 ZN 1.1.1.262 GO:0000287 ... P19624 12896974
    26786 1pto:B (3.5) BS01 SIA ? GO:0005576 ... P04978 7634099
    26787 1pto:C (3.5) BS01 SIA ? GO:0005576 ... P04979 7634099
    26788 1pto:I (3.5) BS01 SIA ? GO:0005576 ... P04979 7634099
    26789 1ptz:A (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    26790 1ptz:A (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    26791 1ptz:B (1.8) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    26792 1ptz:B (1.8) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    26793 1pu0:A (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    26794 1pu0:A (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    26795 1pu0:B (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    26796 1pu0:B (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    26797 1pu0:C (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    26798 1pu0:C (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370
    26799 1pu0:D (1.7) BS01 CU1 1.15.1.1 GO:0000302 ... P00441 12963370
    26800 1pu0:D (1.7) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12963370

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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