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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    25401 1p0p:A (2.3) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 12869558
    25402 1p0p:A (2.3) BS02 VXA 3.1.1.8 GO:0001540 ... P06276 12869558
    25403 1p0p:A (2.3) BS03 BCH 3.1.1.8 GO:0001540 ... P06276 12869558
    25404 1p0q:A (2.43) BS01 FUC 3.1.1.8 GO:0001540 ... P06276 12869558
    25405 1p0q:A (2.43) BS02 VXA 3.1.1.8 GO:0001540 ... P06276 12869558
    25406 1p0s:L (2.8) BS01 MG 3.4.21.6 GO:0005509 ... P00742 12834348
    25407 1p0s:L (2.8) BS02 MG 3.4.21.6 GO:0005509 ... P00742 12834348
    25408 1p0s:L (2.8) BS03 MG 3.4.21.6 GO:0005509 ... P00742 12834348
    25409 1p0y:A (2.55) BS01 SAH 2.1.1.127
    2.1.1.259
    GO:0009507 ... Q43088 12819771
    25410 1p0y:A (2.55) BS02 MLZ 2.1.1.127
    2.1.1.259
    GO:0009507 ... Q43088 12819771
    25411 1p0y:B (2.55) BS01 SAH 2.1.1.127
    2.1.1.259
    GO:0009507 ... Q43088 12819771
    25412 1p0y:B (2.55) BS02 MLZ 2.1.1.127
    2.1.1.259
    GO:0009507 ... Q43088 12819771
    25413 1p0y:C (2.55) BS01 SAH 2.1.1.127
    2.1.1.259
    GO:0009507 ... Q43088 12819771
    25414 1p0y:C (2.55) BS02 MLZ 2.1.1.127
    2.1.1.259
    GO:0009507 ... Q43088 12819771
    25415 1p16:A (2.7) BS01 peptide 2.7.7.50 GO:0004484 ... P78587 12820968
    25416 1p16:A (2.7) BS02 peptide 2.7.7.50 GO:0004484 ... P78587 12820968
    25417 1p16:A (2.7) BS03 G 2.7.7.50 GO:0004484 ... P78587 12820968
    25418 1p16:B (2.7) BS01 peptide 2.7.7.50 GO:0004484 ... P78587 12820968
    25419 1p16:B (2.7) BS02 peptide 2.7.7.50 GO:0004484 ... P78587 12820968
    25420 1p16:B (2.7) BS03 GTP 2.7.7.50 GO:0004484 ... P78587 12820968
    25421 1p17:A (2.7) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288 PDBbind: -logKd/Ki=2.82, Kd=1.5mM
    25422 1p17:B (2.7) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    25423 1p17:C (2.7) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    25424 1p17:D (2.7) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    25425 1p18:A (2.0) BS01 MG 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    25426 1p18:A (2.0) BS02 7HP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    25427 1p18:A (2.0) BS03 PRP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    25428 1p18:B (2.0) BS01 7HP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    25429 1p18:B (2.0) BS02 PRP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288
    25430 1p19:A (2.3) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    PDBbind: -logKd/Ki=4.11, Kd=76.8uM
    25431 1p19:B (2.3) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    25432 1p19:C (2.3) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    25433 1p19:D (2.3) BS01 IMP 2.4.2.8 GO:0000166 ... Q4DRC4 14698288 MOAD: Kd=76.8uM
    25434 1p1h:A (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    25435 1p1h:B (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    25436 1p1h:C (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    25437 1p1h:D (1.95) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    25438 1p1i:A (2.4) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    25439 1p1i:B (2.4) BS01 NAD 5.5.1.4 GO:0004512 ... P11986 12832758
    25440 1p1j:A (1.7) BS01 PO4 5.5.1.4 GO:0004512 ... P11986 12832758
    25441 1p1j:A (1.7) BS02 NAI 5.5.1.4 GO:0004512 ... P11986 12832758
    25442 1p1j:A (1.7) BS03 GOL 5.5.1.4 GO:0004512 ... P11986 12832758
    25443 1p1j:B (1.7) BS01 PO4 5.5.1.4 GO:0004512 ... P11986 12832758
    25444 1p1j:B (1.7) BS02 NAI 5.5.1.4 GO:0004512 ... P11986 12832758
    25445 1p1j:B (1.7) BS03 GOL 5.5.1.4 GO:0004512 ... P11986 12832758
    25446 1p1k:A (2.1) BS01 NAI 5.5.1.4 GO:0004512 ... P11986 12832758
    25447 1p1k:B (2.1) BS01 NAI 5.5.1.4 GO:0004512 ... P11986 12832758
    25448 1p1n:A (1.6) BS01 KAI ? GO:0015276 ... P19491 12730367 MOAD: Kd=0.16uM
    PDBbind: -logKd/Ki=6.80, Kd=0.16uM
    BindingDB: EC50=380000nM, Ki=3690nM
    25449 1p1o:A (1.6) BS01 QUS ? GO:0015276 ... P19491 12730367 MOAD: Kd=1.74uM
    PDBbind: -logKd/Ki=5.76, Kd=1.74uM
    25450 1p1q:A (2.0) BS01 ZN ? GO:0015276 ... P19491 12730367
    25451 1p1q:A (2.0) BS02 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    25452 1p1q:B (2.0) BS01 ZN ? GO:0015276 ... P19491 12730367
    25453 1p1q:B (2.0) BS02 ZN ? GO:0015276 ... P19491 12730367
    25454 1p1q:B (2.0) BS03 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    25455 1p1q:C (2.0) BS01 ZN ? GO:0015276 ... P19491 12730367
    25456 1p1q:C (2.0) BS02 AMQ ? GO:0015276 ... P19491 12730367 MOAD: Kd=12.8uM
    BindingDB: Ki=17nM
    25457 1p1r:A (1.57) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    25458 1p1r:A (1.57) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    25459 1p1r:A (1.57) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 12855684
    25460 1p1r:A (1.57) BS04 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    25461 1p1r:A (1.57) BS05 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    25462 1p1r:B (1.57) BS01 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    25463 1p1r:B (1.57) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    25464 1p1r:B (1.57) BS03 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    25465 1p1r:B (1.57) BS04 NAI 1.1.1.1 GO:0004022 ... P00327 12855684
    25466 1p1r:B (1.57) BS05 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    25467 1p1r:C (1.57) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    25468 1p1r:C (1.57) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    25469 1p1r:C (1.57) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 12855684
    25470 1p1r:C (1.57) BS04 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    25471 1p1r:C (1.57) BS05 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    25472 1p1r:D (1.57) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    25473 1p1r:D (1.57) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12855684
    25474 1p1r:D (1.57) BS03 NAI 1.1.1.1 GO:0004022 ... P00327 12855684
    25475 1p1r:D (1.57) BS04 NMH 1.1.1.1 GO:0004022 ... P00327 12855684 MOAD: Ki=15uM
    25476 1p1u:A (2.0) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    25477 1p1u:B (2.0) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    25478 1p1v:A (1.4) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 12649272
    25479 1p1v:A (1.4) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12649272
    25480 1p1v:B (1.4) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 12649272
    25481 1p1v:B (1.4) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12649272
    25482 1p1v:C (1.4) BS01 ZN 1.15.1.1 GO:0000302 ... P00441 12649272
    25483 1p1v:C (1.4) BS02 ZN 1.15.1.1 GO:0000302 ... P00441 12649272
    25484 1p1w:A (1.8) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    25485 1p1w:B (1.8) BS01 AMQ ? GO:0015276 ... P19491 12730367 BindingDB: Ki=17nM
    25486 1p29:A (2.2) BS01 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    25487 1p29:A (2.2) BS02 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    25488 1p29:A (2.2) BS03 PLP 2.4.1.1 GO:0000166 ... P00489 12930991
    25489 1p2a:A (2.5) BS01 5BN 2.7.11.22 GO:0000082 ... P24941 12852944 MOAD: ic50=12nM
    PDBbind: -logKd/Ki=7.92, IC50=12nM
    BindingDB: IC50=12nM
    25490 1p2b:A (2.2) BS01 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    25491 1p2b:A (2.2) BS02 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    25492 1p2b:A (2.2) BS03 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    25493 1p2b:A (2.2) BS04 PLP 2.4.1.1 GO:0000166 ... P00489 12930991
    25494 1p2d:A (1.94) BS01 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    25495 1p2d:A (1.94) BS02 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    25496 1p2d:A (1.94) BS03 PLP 2.4.1.1 GO:0000166 ... P00489 12930991
    25497 1p2e:A (2.2) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25498 1p2e:A (2.2) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25499 1p2e:A (2.2) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25500 1p2e:A (2.2) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25501 1p2e:A (2.2) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 14609326
    25502 1p2e:A (2.2) BS06 FUM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25503 1p2g:A (2.3) BS01 GLC 2.4.1.1 GO:0000166 ... P00489 12930991
    25504 1p2g:A (2.3) BS02 PLP 2.4.1.1 GO:0000166 ... P00489 12930991
    25505 1p2h:A (2.1) BS01 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25506 1p2h:A (2.1) BS02 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25507 1p2h:A (2.1) BS03 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25508 1p2h:A (2.1) BS04 HEM 1.3.2.4 GO:0008202 ... P0C278 14609326
    25509 1p2h:A (2.1) BS05 FAD 1.3.2.4 GO:0008202 ... P0C278 14609326
    25510 1p2h:A (2.1) BS06 TEO 1.3.2.4 GO:0008202 ... P0C278 14609326
    25511 1p2i:A (1.65) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    25512 1p2j:A (1.35) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    25513 1p2k:A (1.6) BS01 CA 3.4.21.4 GO:0004175 ... P00760 14568540
    25514 1p2p:A (2.6) BS01 CA 3.1.1.4 GO:0002446 ... P00592 6876174
    25515 1p2p:A (2.6) BS02 CA 3.1.1.4 GO:0002446 ... P00592 6876174
    25516 1p2s:A (2.45) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    25517 1p2s:A (2.45) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    25518 1p2s:A (2.45) BS03 ETF 3.6.5.2 GO:0003924 ... P01112 12842038
    25519 1p2t:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    25520 1p2t:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    25521 1p2u:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    25522 1p2u:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    25523 1p2v:A (2.3) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12842038
    25524 1p2v:A (2.3) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12842038
    25525 1p2y:A (2.3) BS01 HEM 1.14.15.1 GO:0004497 ... P00183 14556625
    25526 1p2y:A (2.3) BS02 NCT 1.14.15.1 GO:0004497 ... P00183 14556625
    25527 1p31:A (1.85) BS01 EPU 6.3.2.8 GO:0005524 ... P45066 12837790
    25528 1p31:B (1.85) BS01 EPU 6.3.2.8 GO:0005524 ... P45066 12837790
    25529 1p34:A (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    25530 1p34:A (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    25531 1p34:B (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    25532 1p34:B (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    25533 1p34:C (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    25534 1p34:C (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    25535 1p34:D (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    25536 1p34:D (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    25537 1p34:E (2.7) BS01 dna ? GO:0000786 ... P84233 14739929
    25538 1p34:E (2.7) BS02 dna ? GO:0000786 ... P84233 14739929
    25539 1p34:F (2.7) BS01 dna ? GO:0000786 ... P62799 14739929
    25540 1p34:F (2.7) BS02 dna ? GO:0000786 ... P62799 14739929
    25541 1p34:G (2.7) BS01 dna ? GO:0000786 ... P06897 14739929
    25542 1p34:G (2.7) BS02 dna ? GO:0000786 ... P06897 14739929
    25543 1p34:H (2.7) BS01 dna ? GO:0000786 ... P02281 14739929
    25544 1p34:H (2.7) BS02 dna ? GO:0000786 ... P02281 14739929
    25545 1p39:A (2.0) BS01 SAH 2.1.1.57 GO:0003723 ... P07617 9145102
    25546 1p39:A (2.0) BS02 MGT 2.1.1.57 GO:0003723 ... P07617 9145102
    25547 1p3a:A (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    25548 1p3a:A (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    25549 1p3a:B (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    25550 1p3a:B (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    25551 1p3a:C (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    25552 1p3a:C (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    25553 1p3a:D (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    25554 1p3a:D (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    25555 1p3a:E (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    25556 1p3a:E (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    25557 1p3a:F (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    25558 1p3a:F (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    25559 1p3a:G (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    25560 1p3a:G (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    25561 1p3a:H (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    25562 1p3a:H (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    25563 1p3b:A (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    25564 1p3b:A (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    25565 1p3b:B (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    25566 1p3b:B (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    25567 1p3b:C (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    25568 1p3b:C (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    25569 1p3b:D (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    25570 1p3b:D (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    25571 1p3b:E (3.0) BS01 dna ? GO:0000786 ... P84233 14739929
    25572 1p3b:E (3.0) BS02 dna ? GO:0000786 ... P84233 14739929
    25573 1p3b:F (3.0) BS01 dna ? GO:0000786 ... P62799 14739929
    25574 1p3b:F (3.0) BS02 dna ? GO:0000786 ... P62799 14739929
    25575 1p3b:G (3.0) BS01 dna ? GO:0000786 ... P06897 14739929
    25576 1p3b:G (3.0) BS02 dna ? GO:0000786 ... P06897 14739929
    25577 1p3b:H (3.0) BS01 dna ? GO:0000786 ... P02281 14739929
    25578 1p3b:H (3.0) BS02 dna ? GO:0000786 ... P02281 14739929
    25579 1p3d:A (1.7) BS01 MN 6.3.2.8 GO:0005524 ... P45066 12837790
    25580 1p3d:A (1.7) BS02 UMA 6.3.2.8 GO:0005524 ... P45066 12837790
    25581 1p3d:A (1.7) BS03 ANP 6.3.2.8 GO:0005524 ... P45066 12837790
    25582 1p3d:B (1.7) BS01 MN 6.3.2.8 GO:0005524 ... P45066 12837790
    25583 1p3d:B (1.7) BS02 UMA 6.3.2.8 GO:0005524 ... P45066 12837790
    25584 1p3d:B (1.7) BS03 ANP 6.3.2.8 GO:0005524 ... P45066 12837790
    25585 1p3f:A (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    25586 1p3f:A (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    25587 1p3f:B (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    25588 1p3f:B (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    25589 1p3f:C (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    25590 1p3f:C (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    25591 1p3f:D (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    25592 1p3f:D (2.9) BS02 dna ? GO:0000786 ... P02281 14739929
    25593 1p3f:E (2.9) BS01 dna ? GO:0000786 ... P84233 14739929
    25594 1p3f:E (2.9) BS02 dna ? GO:0000786 ... P84233 14739929
    25595 1p3f:F (2.9) BS01 dna ? GO:0000786 ... P62799 14739929
    25596 1p3f:F (2.9) BS02 dna ? GO:0000786 ... P62799 14739929
    25597 1p3f:G (2.9) BS01 dna ? GO:0000786 ... P06897 14739929
    25598 1p3f:G (2.9) BS02 dna ? GO:0000786 ... P06897 14739929
    25599 1p3f:H (2.9) BS01 dna ? GO:0000786 ... P02281 14739929
    25600 1p3f:H (2.9) BS02 dna ? GO:0000786 ... P02281 14739929

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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