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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    23401 1nvl:A (-1.00) BS01 COA ? GO:0000062 ... P07107 N/A
    23402 1nvp:C (2.1) BS01 dna ? GO:0005672 ... P52655 12972251
    23403 1nvu:Q (2.2) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12628188
    23404 1nvu:Q (2.2) BS02 GTP 3.6.5.2 GO:0003924 ... P01112 12628188
    23405 1nvv:Q (2.18) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12628188
    23406 1nvv:Q (2.18) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12628188
    23407 1nvw:Q (2.7) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12628188
    23408 1nvw:Q (2.7) BS02 GNP 3.6.5.2 GO:0003924 ... P01112 12628188
    23409 1nvx:Q (3.2) BS01 MG 3.6.5.2 GO:0003924 ... P01112 12628188
    23410 1nvx:Q (3.2) BS02 GTP 3.6.5.2 GO:0003924 ... P01112 12628188
    23411 1nw1:A (2.02) BS01 CA 2.7.1.32
    2.7.1.82
    GO:0004103 ... Q22942 12791258
    23412 1nw1:B (2.02) BS01 CA 2.7.1.32
    2.7.1.82
    GO:0004103 ... Q22942 12791258
    23413 1nw2:A (1.9) BS01 ZN 1.8.1.9 GO:0005737 ... P80579 12837806
    23414 1nw2:B (1.9) BS01 ZN 1.8.1.9 GO:0005737 ... P80579 12837806
    23415 1nw2:C (1.9) BS01 ZN 1.8.1.9 GO:0005737 ... P80579 12837806
    23416 1nw2:D (1.9) BS01 ZN 1.8.1.9 GO:0005737 ... P80579 12837806
    23417 1nw2:E (1.9) BS01 ZN 1.8.1.9 GO:0005737 ... P80579 12837806
    23418 1nw2:F (1.9) BS01 ZN 1.8.1.9 GO:0005737 ... P80579 12837806
    23419 1nw2:H (1.9) BS01 ZN 1.8.1.9 GO:0005737 ... P80579 12837806
    23420 1nw4:A (2.2) BS01 IMH 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=0.86nM
    PDBbind: -logKd/Ki=9.07, Kd=860pM
    23421 1nw4:B (2.2) BS01 IMH 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=0.86nM
    PDBbind: -logKd/Ki=9.07, Kd=860pM
    23422 1nw4:C (2.2) BS01 IMH 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=0.86nM
    23423 1nw4:D (2.2) BS01 IMH 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=0.86nM
    23424 1nw4:E (2.2) BS01 IMH 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=0.86nM
    23425 1nw4:F (2.2) BS01 IMH 2.4.2.1
    2.4.2.44
    GO:0003824 ... Q8I3X4 14982926 MOAD: Kd=0.86nM
    23426 1nwg:A (2.32) BS01 CA ? GO:0004461 ... P29752 11485999
    23427 1nwg:C (2.32) BS01 CA ? GO:0004461 ... P29752 11485999
    23428 1nwi:A (2.5) BS01 HEM ? GO:0001666 ... P02213 12705827
    23429 1nwi:A (2.5) BS02 HEM ? GO:0001666 ... P02213 12705827
    23430 1nwi:B (2.5) BS01 HEM ? GO:0001666 ... P02213 12705827
    23431 1nwi:C (2.5) BS01 HEM ? GO:0001666 ... P02213 12705827
    23432 1nwi:C (2.5) BS02 HEM ? GO:0001666 ... P02213 12705827
    23433 1nwi:D (2.5) BS01 HEM ? GO:0001666 ... P02213 12705827
    23434 1nwi:D (2.5) BS02 HEM ? GO:0001666 ... P02213 12705827
    23435 1nwk:A (1.85) BS01 CA 3.6.4.- GO:0000287 ... P68135 12813032
    23436 1nwk:A (1.85) BS02 CA 3.6.4.- GO:0000287 ... P68135 12813032
    23437 1nwk:A (1.85) BS03 CA 3.6.4.- GO:0000287 ... P68135 12813032
    23438 1nwk:A (1.85) BS04 ANP 3.6.4.- GO:0000287 ... P68135 12813032
    23439 1nwk:A (1.85) BS05 RHO 3.6.4.- GO:0000287 ... P68135 12813032
    23440 1nwn:A (2.8) BS01 HEM ? GO:0001666 ... P02213 12705827
    23441 1nwn:A (2.8) BS02 HEM ? GO:0001666 ... P02213 12705827
    23442 1nwn:B (2.8) BS01 HEM ? GO:0001666 ... P02213 12705827
    23443 1nwn:B (2.8) BS02 HEM ? GO:0001666 ... P02213 12705827
    23444 1nwo:A (1.92) BS01 CU ? GO:0005507 ... P34097 9761890
    23445 1nwo:B (1.92) BS01 CU ? GO:0005507 ... P34097 9761890
    23446 1nwp:A (1.6) BS01 CU ? GO:0005507 ... P34097 9761890
    23447 1nwp:A (1.6) BS02 ZN ? GO:0005507 ... P34097 9761890
    23448 1nwp:B (1.6) BS01 CU ? GO:0005507 ... P34097 9761890
    23449 1nwx:3 (3.5) BS01 rna ? GO:0003735 ... Q9RSW6 12623020
    23450 1nwx:4 (3.5) BS01 rna ? GO:0003735 ... Q9RSK0 12623020
    23451 1nwx:A (3.5) BS01 rna ? GO:0002181 ... Q9RXJ9 12623020
    23452 1nwx:B (3.5) BS01 rna ? GO:0003735 ... Q9RXK2 12623020
    23453 1nwx:C (3.5) BS01 rna ? GO:0003735 ... Q9RXK1 12623020
    23454 1nwx:E (3.5) BS01 rna ? GO:0002181 ... Q9RSL3 12623020
    23455 1nwx:I (3.5) BS01 rna ? GO:0003735 ... Q9RXJ2 12623020
    23456 1nwx:J (3.5) BS01 rna ? GO:0003735 ... Q9RSK9 12623020
    23457 1nwx:L (3.5) BS01 rna ? GO:0003735 ... Q9RSJ5 12623020
    23458 1nwx:M (3.5) BS01 rna ? GO:0003735 ... Q9RSL2 12623020
    23459 1nwx:O (3.5) BS01 rna ? GO:0000027 ... Q9RSW7 12623020
    23460 1nwx:Q (3.5) BS01 rna ? GO:0003735 ... Q9RXJ7 12623020
    23461 1nwx:T (3.5) BS01 rna ? GO:0000049 ... Q9RX88 12623020
    23462 1nwx:X (3.5) BS01 rna ? GO:0003735 ... Q9RSL0 12623020
    23463 1nwx:Y (3.5) BS01 rna ? GO:0000049 ... Q9RW44 12623020
    23464 1nwx:Z (3.5) BS01 rna ? GO:0003735 ... P49228 12623020
    23465 1nwy:3 (3.3) BS01 rna ? GO:0003735 ... Q9RSW6 12623020
    23466 1nwy:4 (3.3) BS01 rna ? GO:0003735 ... Q9RSK0 12623020
    23467 1nwy:A (3.3) BS01 rna ? GO:0002181 ... Q9RXJ9 12623020
    23468 1nwy:B (3.3) BS01 rna ? GO:0003735 ... Q9RXK2 12623020
    23469 1nwy:C (3.3) BS01 rna ? GO:0003735 ... Q9RXK1 12623020
    23470 1nwy:E (3.3) BS01 rna ? GO:0002181 ... Q9RSL3 12623020
    23471 1nwy:I (3.3) BS01 rna ? GO:0003735 ... Q9RXJ2 12623020
    23472 1nwy:J (3.3) BS01 rna ? GO:0003735 ... Q9RSK9 12623020
    23473 1nwy:L (3.3) BS01 rna ? GO:0003735 ... Q9RSJ5 12623020
    23474 1nwy:M (3.3) BS01 rna ? GO:0003735 ... Q9RSL2 12623020
    23475 1nwy:O (3.3) BS01 rna ? GO:0000027 ... Q9RSW7 12623020
    23476 1nwy:Q (3.3) BS01 rna ? GO:0003735 ... Q9RXJ7 12623020
    23477 1nwy:T (3.3) BS01 rna ? GO:0000049 ... Q9RX88 12623020
    23478 1nwy:X (3.3) BS01 rna ? GO:0003735 ... Q9RSL0 12623020
    23479 1nwy:Y (3.3) BS01 rna ? GO:0000049 ... Q9RW44 12623020
    23480 1nwy:Z (3.3) BS01 rna ? GO:0003735 ... P49228 12623020
    23481 1nx4:A (2.4) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23482 1nx4:A (2.4) BS02 AKG 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23483 1nx4:B (2.4) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23484 1nx4:B (2.4) BS02 AKG 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23485 1nx4:C (2.4) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23486 1nx4:C (2.4) BS02 AKG 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23487 1nx8:A (2.3) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23488 1nx8:A (2.3) BS02 AKG 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23489 1nx8:B (2.3) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23490 1nx8:B (2.3) BS02 AKG 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23491 1nx8:B (2.3) BS03 N7P 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23492 1nx8:C (2.3) BS01 FE 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23493 1nx8:C (2.3) BS02 AKG 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23494 1nx8:C (2.3) BS03 N7P 1.14.20.3 GO:0005737 ... Q9XB59 12611886
    23495 1nxc:A (1.51) BS01 MAN 3.2.1.113 GO:0004571 ... P45700 15102839
    23496 1nxf:A (1.85) BS01 HEM ? GO:0001666 ... P02213 12705827
    23497 1nxf:B (1.85) BS01 HEM ? GO:0001666 ... P02213 12705827
    23498 1nxg:A (2.5) BS01 NAI 2.3.3.16 GO:0004108 ... P0ABH7 12741811
    23499 1nxg:B (2.5) BS01 NAI 2.3.3.16 GO:0004108 ... P0ABH7 12741811
    23500 1nxk:A (2.7) BS01 STU 2.7.11.1 GO:0000165 ... P49137 12791252
    23501 1nxk:B (2.7) BS01 STU 2.7.11.1 GO:0000165 ... P49137 12791252
    23502 1nxk:C (2.7) BS01 STU 2.7.11.1 GO:0000165 ... P49137 12791252
    23503 1nxk:D (2.7) BS01 STU 2.7.11.1 GO:0000165 ... P49137 12791252
    23504 1ny3:A (3.0) BS01 ADP 2.7.11.1 GO:0000165 ... P49137 12791252
    23505 1nyk:A (1.31) BS01 FES ? GO:0016020 ... Q5SGZ9 12809486
    23506 1nyk:B (1.31) BS01 FES ? GO:0016020 ... Q5SGZ9 12809486
    23507 1nyq:A (3.2) BS01 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23508 1nyq:A (3.2) BS02 TSB 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23509 1nyq:B (3.2) BS01 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23510 1nyq:B (3.2) BS02 TSB 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23511 1nyr:A (2.8) BS01 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23512 1nyr:A (2.8) BS02 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23513 1nyr:A (2.8) BS03 ATP 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23514 1nyr:A (2.8) BS04 THR 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23515 1nyr:B (2.8) BS01 ZN 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23516 1nyr:B (2.8) BS02 ATP 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23517 1nyr:B (2.8) BS03 THR 6.1.1.3 GO:0000049 ... Q8NW68 12875846
    23518 1nyt:A (1.5) BS01 NAP 1.1.1.25 GO:0000166 ... P15770 12637497
    23519 1nyt:B (1.5) BS01 NAP 1.1.1.25 GO:0000166 ... P15770 12637497
    23520 1nyt:C (1.5) BS01 NAP 1.1.1.25 GO:0000166 ... P15770 12637497
    23521 1nyt:D (1.5) BS01 NAP 1.1.1.25 GO:0000166 ... P15770 12637497
    23522 1nyw:A (1.6) BS01 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23523 1nyw:A (1.6) BS02 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23524 1nyw:B (1.6) BS01 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23525 1nyw:B (1.6) BS02 DAU 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23526 1nyx:A (2.65) BS01 DRF ? GO:0003677 ... P37231 12672231 PDBbind: -logKd/Ki=7.04, IC50=0.092uM
    BindingDB: EC50=575nM, Ki=90nM
    23527 1nz2:A (1.9) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    23528 1nz3:A (1.6) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    23529 1nz4:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    23530 1nz5:A (1.7) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 12644706
    23531 1nzc:A (1.8) BS01 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23532 1nzc:A (1.8) BS02 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23533 1nzc:B (1.8) BS01 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23534 1nzc:B (1.8) BS02 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23535 1nzc:C (1.8) BS01 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23536 1nzc:C (1.8) BS02 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23537 1nzc:D (1.8) BS01 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23538 1nzc:D (1.8) BS02 TDX 5.1.3.13 GO:0005829 ... Q8GIQ0 12791259
    23539 1nzj:A (1.5) BS01 ZN 6.1.1.- GO:0000166 ... P27305 15003446
    23540 1nzr:A (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    23541 1nzr:B (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    23542 1nzr:C (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    23543 1nzr:D (2.2) BS01 NI ? GO:0005507 ... P00282 15299800
    23544 1nzw:A (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23545 1nzw:B (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23546 1nzw:C (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23547 1nzw:D (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23548 1nzw:E (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23549 1nzw:F (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23550 1nzw:G (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23551 1nzw:H (2.65) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23552 1nzx:A (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23553 1nzx:B (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23554 1nzx:C (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23555 1nzx:D (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23556 1nzx:E (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23557 1nzx:F (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23558 1nzx:G (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23559 1nzx:H (2.45) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23560 1nzz:A (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23561 1nzz:B (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23562 1nzz:C (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23563 1nzz:D (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23564 1nzz:E (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23565 1nzz:F (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23566 1nzz:G (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23567 1nzz:H (2.45) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23568 1o00:A (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23569 1o00:B (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23570 1o00:C (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23571 1o00:D (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23572 1o00:E (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23573 1o00:F (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23574 1o00:G (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23575 1o00:H (2.6) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23576 1o01:A (2.15) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23577 1o01:B (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    23578 1o01:B (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23579 1o01:C (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    23580 1o01:C (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23581 1o01:D (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    23582 1o01:D (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23583 1o01:E (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    23584 1o01:E (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23585 1o01:F (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    23586 1o01:F (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23587 1o01:G (2.15) BS01 CRD 1.2.1.3 GO:0004029 ... P05091 12795606
    23588 1o01:G (2.15) BS02 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23589 1o01:H (2.15) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606
    23590 1o02:A (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23591 1o02:B (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23592 1o02:C (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23593 1o02:D (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23594 1o02:E (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23595 1o02:F (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23596 1o02:G (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23597 1o02:H (1.9) BS01 NAI 1.2.1.3 GO:0004029 ... P05091 12795606
    23598 1o03:A (1.4) BS01 G16 5.4.2.6 GO:0000287 ... P71447 12637673
    23599 1o03:A (1.4) BS02 MG 5.4.2.6 GO:0000287 ... P71447 12637673
    23600 1o04:A (1.42) BS01 NAD 1.2.1.3 GO:0004029 ... P05091 12795606

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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