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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22801 1nji:V (3.0) BS01 rna ? GO:0003735 ... P14116 12860128
    22802 1nji:W (3.0) BS01 rna ? GO:0003735 ... P10971 12860128
    22803 1nji:X (3.0) BS01 rna ? GO:0000463 ... P14121 12860128
    22804 1nji:X (3.0) BS02 rna ? GO:0000463 ... P14121 12860128
    22805 1nji:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12860128
    22806 1nji:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12860128
    22807 1nji:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12860128
    22808 1njj:A (2.45) BS01 GET 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Ki=8mM
    PDBbind: -logKd/Ki=2.10, Ki=8mM
    22809 1njj:A (2.45) BS02 ORX 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Kd=0.27mM
    22810 1njj:B (2.45) BS01 GET 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Ki=8mM
    22811 1njj:B (2.45) BS02 ORX 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Kd=0.27mM
    22812 1njj:C (2.45) BS01 GET 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Ki=8mM
    22813 1njj:C (2.45) BS02 ORX 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Kd=0.27mM
    22814 1njj:D (2.45) BS01 ORX 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Kd=0.27mM
    22815 1njj:D (2.45) BS02 ORX 4.1.1.17 GO:0003824 ... Q9TZZ6 12672797 MOAD: Kd=0.27mM
    22816 1njr:A (1.9) BS01 XYL 3.1.3.84 GO:0005575 ... Q04299 15722447
    22817 1nkg:A (1.5) BS01 CA 4.2.2.23 GO:0000272 ... Q00019 15135077
    22818 1nkh:A (2.0) BS01 CA ? GO:0004461 ... P29752 11419947
    22819 1nkh:C (2.0) BS01 CA ? GO:0004461 ... P29752 11419947
    22820 1nki:A (0.95) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 15504029
    22821 1nki:A (0.95) BS02 PPF 2.5.1.18 GO:0004364 ... Q9I4K6 15504029 MOAD: Kd=0.2uM
    PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    22822 1nki:B (0.95) BS01 MN 2.5.1.18 GO:0004364 ... Q9I4K6 15504029
    22823 1nki:B (0.95) BS02 PPF 2.5.1.18 GO:0004364 ... Q9I4K6 15504029 MOAD: Kd=0.2uM
    PDBbind: -logKd/Ki=6.70, Kd=0.2uM
    22824 1nkq:A (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    22825 1nkq:B (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    22826 1nkq:C (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    22827 1nkq:D (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    22828 1nkq:E (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    22829 1nkq:F (2.2) BS01 CA 3.-.-.- GO:0003674 ... P53889 N/A
    22830 1nks:C (2.57) BS01 AMP 2.7.4.3 GO:0004017 ... P35028 9733648
    22831 1nks:D (2.57) BS01 AMP 2.7.4.3 GO:0004017 ... P35028 9733648
    22832 1nks:F (2.57) BS01 AMP 2.7.4.3 GO:0004017 ... P35028 9733648
    22833 1nks:F (2.57) BS02 ADP 2.7.4.3 GO:0004017 ... P35028 9733648
    22834 1nkt:A (2.601) BS01 ADP 7.4.2.8 GO:0005515 ... P9WGP5 12606717
    22835 1nkt:B (2.601) BS01 ADP 7.4.2.8 GO:0005515 ... P9WGP5 12606717
    22836 1nkw:3 (3.1) BS01 rna ? GO:0003735 ... Q9RSW6 11733066
    22837 1nkw:A (3.1) BS01 rna ? GO:0002181 ... Q9RXJ9 11733066
    22838 1nkw:B (3.1) BS01 rna ? GO:0003735 ... Q9RXK2 11733066
    22839 1nkw:C (3.1) BS01 rna ? GO:0003735 ... Q9RXK1 11733066
    22840 1nkw:D (3.1) BS01 rna ? GO:0000049 ... Q9RXJ0 11733066
    22841 1nkw:I (3.1) BS01 rna ? GO:0003735 ... Q9RXJ2 11733066
    22842 1nkw:J (3.1) BS01 rna ? GO:0003735 ... Q9RSK9 11733066
    22843 1nkw:K (3.1) BS01 rna ? GO:0000049 ... Q9RXJ5 11733066
    22844 1nkw:L (3.1) BS01 rna ? GO:0003735 ... Q9RSJ5 11733066
    22845 1nkw:O (3.1) BS01 rna ? GO:0000027 ... Q9RSW7 11733066
    22846 1nkw:Q (3.1) BS01 rna ? GO:0003735 ... Q9RXJ7 11733066
    22847 1nkw:X (3.1) BS01 rna ? GO:0003735 ... Q9RSL0 11733066
    22848 1nkw:Y (3.1) BS01 rna ? GO:0000049 ... Q9RW44 11733066
    22849 1nkw:Z (3.1) BS01 rna ? GO:0003735 ... P49228 11733066
    22850 1nkx:A (1.9) BS01 FE 3.4.21.- GO:0005576 ... P24627 12888354
    22851 1nkx:A (1.9) BS02 CO3 3.4.21.- GO:0005576 ... P24627 12888354
    22852 1nkz:A (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    22853 1nkz:A (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    22854 1nkz:A (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    22855 1nkz:B (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    22856 1nkz:B (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    22857 1nkz:B (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    22858 1nkz:C (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    22859 1nkz:C (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    22860 1nkz:C (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    22861 1nkz:C (2.0) BS04 BCL ? GO:0005886 ... P26789 12595263
    22862 1nkz:D (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    22863 1nkz:D (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    22864 1nkz:D (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    22865 1nkz:E (2.0) BS01 BCL ? GO:0005886 ... P26789 12595263
    22866 1nkz:E (2.0) BS02 BCL ? GO:0005886 ... P26789 12595263
    22867 1nkz:E (2.0) BS03 BCL ? GO:0005886 ... P26789 12595263
    22868 1nkz:E (2.0) BS04 BCL ? GO:0005886 ... P26789 12595263
    22869 1nkz:F (2.0) BS01 BCL ? GO:0005886 ... P26790 12595263
    22870 1nkz:F (2.0) BS02 BCL ? GO:0005886 ... P26790 12595263
    22871 1nkz:F (2.0) BS03 BCL ? GO:0005886 ... P26790 12595263
    22872 1nl0:G (2.2) BS01 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    22873 1nl0:G (2.2) BS02 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    22874 1nl0:G (2.2) BS03 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    22875 1nl0:G (2.2) BS04 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    22876 1nl0:G (2.2) BS05 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    22877 1nl0:G (2.2) BS06 CA 3.4.21.22 GO:0005509 ... P00740 14722079
    22878 1nl1:A (1.9) BS01 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22879 1nl1:A (1.9) BS02 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22880 1nl1:A (1.9) BS03 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22881 1nl1:A (1.9) BS04 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22882 1nl1:A (1.9) BS05 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22883 1nl1:A (1.9) BS06 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22884 1nl2:A (2.3) BS01 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22885 1nl2:A (2.3) BS02 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22886 1nl2:A (2.3) BS03 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22887 1nl2:A (2.3) BS04 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22888 1nl2:A (2.3) BS05 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22889 1nl2:A (2.3) BS06 CA 3.4.21.5 GO:0005509 ... P00735 12923575
    22890 1nl2:A (2.3) BS07 LPS 3.4.21.5 GO:0005509 ... P00735 12923575
    22891 1nl4:B (2.7) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 12657284
    22892 1nl4:B (2.7) BS02 HFP 2.5.1.58 GO:0003824 ... Q02293 12657284
    22893 1nl4:B (2.7) BS03 FTL 2.5.1.58 GO:0003824 ... Q02293 12657284 PDBbind: -logKd/Ki=9.41, IC50=0.39nM
    22894 1nl5:A (2.1) BS01 GLC ? GO:0005515 ... P0AEX9 12794084
    22895 1nl5:A (2.1) BS02 GLC ? GO:0005515 ... P0AEX9 12794084
    22896 1nl7:A (1.903) BS01 COA 2.3.1.9 GO:0003985 ... P07097 N/A
    22897 1nl7:B (1.903) BS01 COA 2.3.1.9 GO:0003985 ... P07097 N/A
    22898 1nlk:L (2.0) BS01 ADP 2.7.4.6 GO:0004550 ... P15266 8263923
    22899 1nlk:R (2.0) BS01 ADP 2.7.4.6 GO:0004550 ... P15266 8263923
    22900 1nlm:A (2.5) BS01 UD1 2.4.1.227 GO:0005515 ... P17443 12538870
    22901 1nlm:B (2.5) BS01 UD1 2.4.1.227 GO:0005515 ... P17443 12538870
    22902 1nln:A (1.6) BS01 peptide 3.4.22.39 GO:0003677 ... P03252 12758141
    22903 1nlv:A (1.8) BS01 ATP 3.6.4.- GO:0000281 ... P07830 12732734
    22904 1nly:A (2.8) BS01 AGS ? GO:0000166 ... Q7BK04 12727865
    22905 1nly:B (2.8) BS01 AGS ? GO:0000166 ... Q7BK04 12727865
    22906 1nm0:A (2.3) BS01 SO4 1.11.1.6 GO:0004096 ... P42321 14646074
    22907 1nm0:A (2.3) BS02 SO4 1.11.1.6 GO:0004096 ... P42321 14646074
    22908 1nm0:A (2.3) BS03 HEM 1.11.1.6 GO:0004096 ... P42321 14646074
    22909 1nm0:A (2.3) BS04 FMT 1.11.1.6 GO:0004096 ... P42321 14646074
    22910 1nm0:A (2.3) BS05 GOL 1.11.1.6 GO:0004096 ... P42321 14646074
    22911 1nm1:A (1.8) BS01 ATP 3.6.4.- GO:0000281 ... P07830 12732734
    22912 1nm5:A (2.4) BS01 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 12564924 MOAD: Kd=20uM
    22913 1nm5:B (2.4) BS01 NAD 7.1.1.1 GO:0000166 ... Q2RSB2 12564924 MOAD: Kd=20uM
    22914 1nm6:A (1.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 12873514
    22915 1nm6:A (1.8) BS02 L86 3.4.21.5 GO:0004252 ... P00734 12873514 MOAD: Ki=0.09nM
    PDBbind: -logKd/Ki=10.05, Ki=0.09nM
    BindingDB: Ki=0.090000nM
    22916 1nm9:A (2.1) BS01 GLC 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    22917 1nm9:A (2.1) BS02 AGL 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    22918 1nm9:A (2.1) BS03 GLC 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    22919 1nm9:A (2.1) BS04 AGL 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    22920 1nm9:A (2.1) BS05 HMC 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    22921 1nm9:A (2.1) BS06 CA 3.2.1.1 GO:0003824 ... P0DUB6 15182367
    22922 1nma:N (3.0) BS01 MAN 3.2.1.18 GO:0004308 ... P05803 7517697
    22923 1nmb:N (2.2) BS01 BMA 3.2.1.18 GO:0004308 ... P05803 7994573
    22924 1nmb:N (2.2) BS02 MAN 3.2.1.18 GO:0004308 ... P05803 7994573
    22925 1nmb:N (2.2) BS03 MAN 3.2.1.18 GO:0004308 ... P05803 7994573
    22926 1nmb:N (2.2) BS04 MAN 3.2.1.18 GO:0004308 ... P05803 7994573
    22927 1nmb:N (2.2) BS05 CA 3.2.1.18 GO:0004308 ... P05803 7994573
    22928 1nmc:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9642070
    22929 1nmc:N (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 9642070
    22930 1nmd:A (1.9) BS01 ATP 3.6.4.- GO:0000281 ... P07830 12732734
    22931 1nmi:A (-1.00) BS01 HEC ? GO:0005515 ... P00044 N/A
    22932 1nmk:A (2.1) BS01 SFM 5.2.1.8 GO:0000413 ... P62937 12656618 MOAD: ic50=5.7nM
    PDBbind: -logKd/Ki=8.24, IC50=5.7nM
    22933 1nmk:B (2.1) BS01 SFM 5.2.1.8 GO:0000413 ... P62937 12656618 MOAD: ic50=5.7nM
    22934 1nml:A (2.2) BS01 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    22935 1nml:A (2.2) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    22936 1nmm:A (2.0) BS01 CA ? GO:0004461 ... P29752 11485999
    22937 1nmm:C (2.0) BS01 CA ? GO:0004461 ... P29752 11485999
    22938 1nmo:A (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    22939 1nmo:A (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    22940 1nmo:B (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    22941 1nmo:B (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    22942 1nmo:C (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    22943 1nmo:C (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    22944 1nmo:D (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    22945 1nmo:D (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    22946 1nmo:E (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    22947 1nmo:E (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    22948 1nmo:F (2.2) BS01 FE ? GO:0005737 ... P0AFP6 14519207
    22949 1nmo:F (2.2) BS02 FE ? GO:0005737 ... P0AFP6 14519207
    22950 1nmp:A (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    22951 1nmp:A (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    22952 1nmp:B (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    22953 1nmp:C (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    22954 1nmp:C (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    22955 1nmp:D (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    22956 1nmp:D (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    22957 1nmp:E (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    22958 1nmp:E (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    22959 1nmp:F (2.2) BS01 MG ? GO:0005737 ... P0AFP6 14519207
    22960 1nmp:F (2.2) BS02 MG ? GO:0005737 ... P0AFP6 14519207
    22961 1nmq:A (2.4) BS01 160 3.4.22.56 GO:0001554 ... P42574 12563278
    22962 1nmq:B (2.4) BS01 160 3.4.22.56 GO:0001554 ... P42574 12563278
    22963 1nms:A (1.7) BS01 161 3.4.22.56 GO:0001554 ... P42574 12563278
    22964 1nms:B (1.7) BS01 161 3.4.22.56 GO:0001554 ... P42574 12563278
    22965 1nmu:A (2.31) BS01 GLC ? GO:0005515 ... P0AEX9 12589748
    22966 1nmu:A (2.31) BS02 GLC ? GO:0005515 ... P0AEX9 12589748
    22967 1nmu:A (2.31) BS03 GLC ? GO:0005515 ... P0AEX9 12589748
    22968 1nmu:A (2.31) BS04 GLC ? GO:0005515 ... P0AEX9 12589748
    22969 1nmu:C (2.31) BS01 GLC ? GO:0005515 ... P0AEX9 12589748
    22970 1nmu:C (2.31) BS02 GLC ? GO:0005515 ... P0AEX9 12589748
    22971 1nmu:C (2.31) BS03 GLC ? GO:0005515 ... P0AEX9 12589748
    22972 1nmu:C (2.31) BS04 GLC ? GO:0005515 ... P0AEX9 12589748
    22973 1nmx:A (1.7) BS01 FDM 2.7.4.9 GO:0004550 ... P23919 12614151
    22974 1nmx:A (1.7) BS02 ADP 2.7.4.9 GO:0004550 ... P23919 12614151
    22975 1nmy:A (1.6) BS01 FDM 2.7.4.9 GO:0004550 ... P23919 12614151
    22976 1nmy:A (1.6) BS02 ADP 2.7.4.9 GO:0004550 ... P23919 12614151
    22977 1nmy:A (1.6) BS03 ANP 2.7.4.9 GO:0004550 ... P23919 12614151
    22978 1nmz:A (1.75) BS01 NYM 2.7.4.9 GO:0004550 ... P23919 12614151
    22979 1nmz:A (1.75) BS02 ANP 2.7.4.9 GO:0004550 ... P23919 12614151
    22980 1nn0:A (1.6) BS01 2DT 2.7.4.9 GO:0004550 ... P23919 12614151
    22981 1nn0:A (1.6) BS02 ADP 2.7.4.9 GO:0004550 ... P23919 12614151
    22982 1nn1:A (1.9) BS01 2DT 2.7.4.9 GO:0004550 ... P23919 12614151
    22983 1nn1:A (1.9) BS02 ANP 2.7.4.9 GO:0004550 ... P23919 12614151
    22984 1nn2:A (2.2) BS01 CA 3.2.1.18 GO:0004308 ... P06820 1920428
    22985 1nn3:A (1.55) BS01 2DT 2.7.4.9 GO:0004550 ... P23919 12614151
    22986 1nn3:A (1.55) BS02 ADP 2.7.4.9 GO:0004550 ... P23919 12614151
    22987 1nn5:A (1.5) BS01 2DT 2.7.4.9 GO:0004550 ... P23919 12614151
    22988 1nn5:A (1.5) BS02 ANP 2.7.4.9 GO:0004550 ... P23919 12614151
    22989 1nn7:A (2.1) BS01 ZN ? GO:0005249 ... Q63881 12835418
    22990 1nna:A (2.5) BS01 CA 3.2.1.18 GO:0004308 ... P03472 8371267
    22991 1nnb:A (2.8) BS01 CA 3.2.1.18 GO:0004308 ... P03472 8371267
    22992 1nnb:A (2.8) BS02 DAN 3.2.1.18 GO:0004308 ... P03472 8371267 PDBbind: -logKd/Ki=5.00, Ki=10uM
    BindingDB: IC50=13000nM
    22993 1nnc:A (1.8) BS01 CA 3.2.1.18 GO:0004308 ... P03472 7549872
    22994 1nnc:A (1.8) BS02 ZMR 3.2.1.18 GO:0004308 ... P03472 7549872
    22995 1nnf:A (1.1) BS01 FE ? GO:0006826 ... P35755 12533539
    22996 1nnf:A (1.1) BS02 EDT ? GO:0006826 ... P35755 12533539
    22997 1nni:1 (2.5) BS01 FMN 1.7.-.- GO:0005829 ... O07529 N/A
    22998 1nnk:A (1.85) BS01 ZN ? GO:0015276 ... P19491 12593667
    22999 1nnk:A (1.85) BS02 CE2 ? GO:0015276 ... P19491 12593667 MOAD: ic50=3.5uM
    PDBbind: -logKd/Ki=5.46, IC50=3.5uM
    23000 1nnl:A (1.53) BS01 CA 3.1.3.3 GO:0000287 ... P78330 12777757

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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