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BioLiP
Download all results in tab-seperated text for 594392 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    22001 1n68:A (1.7) BS02 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    22002 1n68:A (1.7) BS03 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    22003 1n68:A (1.7) BS04 CU 1.16.3.4 GO:0004322 ... P36649 12794077
    22004 1n68:A (1.7) BS05 C2C 1.16.3.4 GO:0004322 ... P36649 12794077
    22005 1n6a:A (1.7) BS01 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 12514135
    22006 1n6b:A (2.3) BS01 HEM 1.14.14.1 GO:0004497 ... P00179 12767218
    22007 1n6b:A (2.3) BS02 DMZ 1.14.14.1 GO:0004497 ... P00179 12767218 MOAD: Kd=20uM
    22008 1n6c:A (2.3) BS01 SAM 2.1.1.364 GO:0005694 ... Q8WTS6 12514135
    22009 1n6d:A (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22010 1n6d:A (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22011 1n6d:A (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22012 1n6d:B (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22013 1n6d:B (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22014 1n6d:B (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22015 1n6d:C (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22016 1n6d:C (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22017 1n6d:C (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22018 1n6d:D (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22019 1n6d:D (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22020 1n6d:D (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22021 1n6d:E (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22022 1n6d:E (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22023 1n6d:E (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22024 1n6d:F (2.8) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22025 1n6d:F (2.8) BS02 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22026 1n6d:F (2.8) BS03 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22027 1n6e:A (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22028 1n6e:A (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22029 1n6e:C (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22030 1n6e:C (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22031 1n6e:E (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22032 1n6e:E (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22033 1n6e:G (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22034 1n6e:G (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22035 1n6e:I (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22036 1n6e:I (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22037 1n6e:K (2.6) BS01 peptide 3.4.21.- GO:0005737 ... P96086 12470958
    22038 1n6e:K (2.6) BS02 CHM 3.4.21.- GO:0005737 ... P96086 12470958
    22039 1n6f:A (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    22040 1n6f:B (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    22041 1n6f:C (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    22042 1n6f:D (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    22043 1n6f:E (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    22044 1n6f:F (2.7) BS01 DKT 3.4.21.- GO:0005737 ... P96086 12470958
    22045 1n6x:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 12575941
    22046 1n6x:A (1.4) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 12575941
    22047 1n6y:A (1.4) BS01 CA 3.4.21.4 GO:0004175 ... P00760 12575941
    22048 1n6y:A (1.4) BS02 ABN 3.4.21.4 GO:0004175 ... P00760 12575941
    22049 1n70:A (1.6) BS01 CU 1.7.2.1 GO:0005507 ... Q53239 N/A
    22050 1n70:A (1.6) BS02 MG 1.7.2.1 GO:0005507 ... Q53239 N/A
    22051 1n73:B (2.9) BS01 peptide ? GO:0005102 ... P02678 12501189
    22052 1n73:B (2.9) BS02 CA ? GO:0005102 ... P02678 12501189
    22053 1n73:E (2.9) BS01 peptide ? GO:0005102 ... P02678 12501189
    22054 1n73:E (2.9) BS02 CA ? GO:0005102 ... P02678 12501189
    22055 1n75:A (1.9) BS01 ATP 6.1.1.17 GO:0000049 ... P27000 12554668
    22056 1n76:A (3.4) BS01 FE 3.4.21.- GO:0001503 ... P02788 N/A
    22057 1n76:A (3.4) BS02 FE 3.4.21.- GO:0001503 ... P02788 N/A
    22058 1n76:A (3.4) BS03 CO3 3.4.21.- GO:0001503 ... P02788 N/A
    22059 1n76:A (3.4) BS04 CO3 3.4.21.- GO:0001503 ... P02788 N/A
    22060 1n77:A (2.4) BS01 rna 6.1.1.17 GO:0000049 ... P27000 12554668 PDBbind: Kd=90uM
    22061 1n77:A (2.4) BS02 ATP 6.1.1.17 GO:0000049 ... P27000 12554668
    22062 1n77:B (2.4) BS01 rna 6.1.1.17 GO:0000049 ... P27000 12554668 PDBbind: Kd=90uM
    22063 1n77:B (2.4) BS02 ATP 6.1.1.17 GO:0000049 ... P27000 12554668
    22064 1n78:A (2.1) BS01 rna 6.1.1.17 GO:0000049 ... P27000 12554668 PDBbind: Ki=3uM
    22065 1n78:A (2.1) BS02 GOM 6.1.1.17 GO:0000049 ... P27000 12554668
    22066 1n78:B (2.1) BS01 rna 6.1.1.17 GO:0000049 ... P27000 12554668 PDBbind: Ki=3uM
    22067 1n78:B (2.1) BS02 GOM 6.1.1.17 GO:0000049 ... P27000 12554668
    22068 1n7g:A (2.2) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22069 1n7g:A (2.2) BS02 GDR 4.2.1.47 GO:0005525 ... P93031 12501186
    22070 1n7g:A (2.2) BS03 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22071 1n7g:B (2.2) BS01 GDR 4.2.1.47 GO:0005525 ... P93031 12501186
    22072 1n7g:B (2.2) BS02 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22073 1n7g:B (2.2) BS03 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22074 1n7g:C (2.2) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22075 1n7g:C (2.2) BS02 GDR 4.2.1.47 GO:0005525 ... P93031 12501186
    22076 1n7g:C (2.2) BS03 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22077 1n7g:D (2.2) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22078 1n7g:D (2.2) BS02 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22079 1n7h:A (1.8) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22080 1n7h:A (1.8) BS02 GDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22081 1n7h:B (1.8) BS01 NDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22082 1n7h:B (1.8) BS02 GDP 4.2.1.47 GO:0005525 ... P93031 12501186
    22083 1n7i:A (2.8) BS01 SAH 2.1.1.28 GO:0004603 ... P11086 14695818
    22084 1n7i:A (2.8) BS02 LY1 2.1.1.28 GO:0004603 ... P11086 14695818 PDBbind: -logKd/Ki=6.59, Ki=0.26uM
    BindingDB: Ki=4400nM
    22085 1n7i:B (2.8) BS01 SAH 2.1.1.28 GO:0004603 ... P11086 14695818
    22086 1n7i:B (2.8) BS02 LY1 2.1.1.28 GO:0004603 ... P11086 14695818 BindingDB: Ki=4400nM
    22087 1n7j:A (2.7) BS01 SAH 2.1.1.28 GO:0004603 ... P11086 14695818
    22088 1n7j:A (2.7) BS02 IDI 2.1.1.28 GO:0004603 ... P11086 14695818 PDBbind: -logKd/Ki=6.43, Ki=0.37uM
    BindingDB: Ki=93nM
    22089 1n7j:B (2.7) BS01 SAH 2.1.1.28 GO:0004603 ... P11086 14695818
    22090 1n7j:B (2.7) BS02 IDI 2.1.1.28 GO:0004603 ... P11086 14695818 BindingDB: Ki=93nM
    22091 1n7q:A (2.3) BS01 BDP 4.2.2.1 GO:0003824 ... Q8CWU3 12446724
    22092 1n7q:A (2.3) BS02 BDP 4.2.2.1 GO:0003824 ... Q8CWU3 12446724
    22093 1n7q:A (2.3) BS03 GTR 4.2.2.1 GO:0003824 ... Q8CWU3 12446724
    22094 1n7r:A (2.2) BS01 BDP 4.2.2.1 GO:0003824 ... Q54873 12446724
    22095 1n7r:A (2.2) BS02 BDP 4.2.2.1 GO:0003824 ... Q54873 12446724
    22096 1n7u:A (2.4) BS01 CA ? GO:0019062 ... P27378 12623018
    22097 1n7v:A (2.2) BS01 CA ? GO:0019062 ... P27378 12623018
    22098 1n7w:A (2.2) BS01 CO3 ? GO:0005576 ... P02787 12458193
    22099 1n7w:A (2.2) BS02 FE ? GO:0005576 ... P02787 12458193
    22100 1n7x:A (2.1) BS01 CO3 ? GO:0005576 ... P02787 12458193
    22101 1n7x:A (2.1) BS02 FE ? GO:0005576 ... P02787 12458193
    22102 1n83:A (1.63) BS01 CLR ? GO:0003677 ... P35398 12467577
    22103 1n84:A (2.05) BS01 CO3 ? GO:0005576 ... P02787 12458193
    22104 1n84:A (2.05) BS02 FE ? GO:0005576 ... P02787 12458193
    22105 1n86:B (3.2) BS01 peptide ? GO:0005102 ... P02675 12501189
    22106 1n86:B (3.2) BS02 CA ? GO:0005102 ... P02675 12501189
    22107 1n86:C (3.2) BS01 peptide ? GO:0005102 ... P02679 12501189
    22108 1n86:C (3.2) BS02 CA ? GO:0005102 ... P02679 12501189
    22109 1n86:E (3.2) BS01 peptide ? GO:0005102 ... P02675 12501189
    22110 1n86:E (3.2) BS02 CA ? GO:0005102 ... P02675 12501189
    22111 1n86:F (3.2) BS01 peptide ? GO:0005102 ... P02679 12501189
    22112 1n86:F (3.2) BS02 CA ? GO:0005102 ... P02679 12501189
    22113 1n89:A (-1.00) BS01 PGM ? GO:0005576 ... P82900 12525478
    22114 1n8f:A (1.75) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12667068
    22115 1n8f:A (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 12667068
    22116 1n8f:B (1.75) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12667068
    22117 1n8f:B (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 12667068
    22118 1n8f:C (1.75) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12667068
    22119 1n8f:C (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 12667068
    22120 1n8f:D (1.75) BS01 MN 2.5.1.54 GO:0003849 ... P0AB91 12667068
    22121 1n8f:D (1.75) BS02 PEP 2.5.1.54 GO:0003849 ... P0AB91 12667068
    22122 1n8i:A (2.1) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 12393860
    22123 1n8i:A (2.1) BS02 GLV 2.3.3.9 GO:0000287 ... P9WK17 12393860
    22124 1n8k:A (1.13) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12627956
    22125 1n8k:A (1.13) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12627956
    22126 1n8k:A (1.13) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 12627956
    22127 1n8k:A (1.13) BS04 PZO 1.1.1.1 GO:0004022 ... P00327 12627956
    22128 1n8k:B (1.13) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12627956
    22129 1n8k:B (1.13) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12627956
    22130 1n8k:B (1.13) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 12627956
    22131 1n8k:B (1.13) BS04 PZO 1.1.1.1 GO:0004022 ... P00327 12627956
    22132 1n8p:A (2.6) BS01 PLP 4.4.1.1 GO:0004123 ... P31373 12715888
    22133 1n8p:B (2.6) BS01 PLP 4.4.1.1 GO:0004123 ... P31373 12715888
    22134 1n8p:B (2.6) BS02 PLP 4.4.1.1 GO:0004123 ... P31373 12715888
    22135 1n8p:C (2.6) BS01 PLP 4.4.1.1 GO:0004123 ... P31373 12715888
    22136 1n8p:D (2.6) BS01 PLP 4.4.1.1 GO:0004123 ... P31373 12715888
    22137 1n8p:D (2.6) BS02 PLP 4.4.1.1 GO:0004123 ... P31373 12715888
    22138 1n8q:A (2.1) BS01 FE2 1.13.11.58 GO:0005737 ... P09186 14705020
    22139 1n8q:A (2.1) BS02 DHB 1.13.11.58 GO:0005737 ... P09186 14705020
    22140 1n8r:1 (3.0) BS01 rna ? GO:0003735 ... P60619 12860128
    22141 1n8r:2 (3.0) BS01 rna ? GO:0003723 ... P32410 12860128
    22142 1n8r:3 (3.0) BS01 rna ? GO:0003735 ... P22452 12860128
    22143 1n8r:4 (3.0) BS01 rna ? GO:0000049 ... P32411 12860128
    22144 1n8r:4 (3.0) BS02 MG ? GO:0000049 ... P32411 12860128
    22145 1n8r:C (3.0) BS01 rna ? GO:0002181 ... P20276 12860128
    22146 1n8r:D (3.0) BS01 rna ? GO:0003723 ... P20279 12860128
    22147 1n8r:E (3.0) BS01 rna ? GO:0003723 ... P12735 12860128
    22148 1n8r:F (3.0) BS01 rna ? GO:0000049 ... P14124 12860128
    22149 1n8r:F (3.0) BS02 rna ? GO:0000049 ... P14124 12860128
    22150 1n8r:G (3.0) BS01 rna ? GO:0002181 ... P14135 12860128
    22151 1n8r:H (3.0) BS01 rna ? GO:0001682 ... P12743 12860128
    22152 1n8r:J (3.0) BS01 rna ? GO:0000027 ... P60617 12860128
    22153 1n8r:K (3.0) BS01 rna ? GO:0003729 ... P29198 12860128
    22154 1n8r:L (3.0) BS01 rna ? GO:0003735 ... P22450 12860128
    22155 1n8r:M (3.0) BS01 rna ? GO:0003735 ... P12737 12860128
    22156 1n8r:N (3.0) BS01 rna ? GO:0002181 ... P60618 12860128
    22157 1n8r:O (3.0) BS01 rna ? GO:0000027 ... P14123 12860128
    22158 1n8r:O (3.0) BS02 rna ? GO:0000027 ... P14123 12860128
    22159 1n8r:P (3.0) BS01 rna ? GO:0003723 ... P12733 12860128
    22160 1n8r:Q (3.0) BS01 rna ? GO:0003723 ... P14119 12860128
    22161 1n8r:R (3.0) BS01 rna ? GO:0003735 ... P12734 12860128
    22162 1n8r:R (3.0) BS02 rna ? GO:0003735 ... P12734 12860128
    22163 1n8r:S (3.0) BS01 rna ? GO:0002181 ... P10970 12860128
    22164 1n8r:T (3.0) BS01 rna ? GO:0000027 ... P12732 12860128
    22165 1n8r:U (3.0) BS01 rna ? GO:0002181 ... P10972 12860128
    22166 1n8r:U (3.0) BS02 MG ? GO:0002181 ... P10972 12860128
    22167 1n8r:V (3.0) BS01 rna ? GO:0003735 ... P14116 12860128
    22168 1n8r:W (3.0) BS01 rna ? GO:0003735 ... P10971 12860128
    22169 1n8r:X (3.0) BS01 rna ? GO:0000463 ... P14121 12860128
    22170 1n8r:X (3.0) BS02 rna ? GO:0000463 ... P14121 12860128
    22171 1n8r:Y (3.0) BS01 rna ? GO:0002181 ... P18138 12860128
    22172 1n8r:Z (3.0) BS01 rna ? GO:0000166 ... P12736 12860128
    22173 1n8r:Z (3.0) BS02 MG ? GO:0000166 ... P12736 12860128
    22174 1n8w:A (2.7) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 12393860
    22175 1n8w:A (2.7) BS02 COA 2.3.3.9 GO:0000287 ... P9WK17 12393860
    22176 1n8w:B (2.7) BS01 MG 2.3.3.9 GO:0000287 ... P9WK17 12393860
    22177 1n8w:B (2.7) BS02 GLV 2.3.3.9 GO:0000287 ... P9WK17 12393860
    22178 1n90:A (2.9) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 10329702
    22179 1n90:A (2.9) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 10329702
    22180 1n90:B (2.9) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 10329702
    22181 1n90:B (2.9) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 10329702
    22182 1n92:A (1.47) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12627956
    22183 1n92:A (1.47) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12627956
    22184 1n92:A (1.47) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 12627956
    22185 1n92:A (1.47) BS04 PYZ 1.1.1.1 GO:0004022 ... P00327 12627956
    22186 1n92:B (1.47) BS01 ZN 1.1.1.1 GO:0004022 ... P00327 12627956
    22187 1n92:B (1.47) BS02 ZN 1.1.1.1 GO:0004022 ... P00327 12627956
    22188 1n92:B (1.47) BS03 NAJ 1.1.1.1 GO:0004022 ... P00327 12627956
    22189 1n92:B (1.47) BS04 PYZ 1.1.1.1 GO:0004022 ... P00327 12627956
    22190 1n94:B (3.5) BS01 HFP 2.5.1.58 GO:0003824 ... Q02293 12657282
    22191 1n94:B (3.5) BS02 TIN 2.5.1.58 GO:0003824 ... Q02293 12657282 PDBbind: -logKd/Ki=8.96, IC50=1.1nM
    22192 1n94:B (3.5) BS03 ZN 2.5.1.58 GO:0003824 ... Q02293 12657282
    22193 1n95:B (2.3) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 12657282
    22194 1n95:B (2.3) BS02 HFP 2.5.1.58 GO:0003824 ... Q02293 12657282
    22195 1n95:B (2.3) BS03 FTH 2.5.1.58 GO:0003824 ... Q02293 12657282 PDBbind: -logKd/Ki=8.92, IC50=1.2nM
    22196 1n9a:B (3.2) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 12657283
    22197 1n9a:B (3.2) BS02 HFP 2.5.1.58 GO:0003824 ... Q02293 12657283
    22198 1n9a:B (3.2) BS03 FTI 2.5.1.58 GO:0003824 ... Q02293 12657283 PDBbind: -logKd/Ki=8.66, IC50=2.2nM
    22199 1n9c:A (-1.00) BS01 HEC ? GO:0005506 ... P82599 12534286
    22200 1n9f:A (1.8) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P02185 12777759

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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