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BioLiP
Download all results in tab-seperated text for 879 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801 6t1b:A (1.2) BS03 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... P84138 31978345
    802 6xz2:B (1.65) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 34045551
    803 6xz2:C (1.65) BS01 FMC 2.4.2.1 GO:0003824 ... P0ABP8 34045551
    804 7f3v:A (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    805 7f3v:B (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    806 7f3v:C (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    807 7f3v:D (1.47) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    808 7fbg:A (1.6) BS01 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... Q812W6 N/A
    809 7fbg:A (1.6) BS02 ZN 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... Q812W6 N/A
    810 7fbg:A (1.6) BS03 CA 2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0004000 ... Q812W6 N/A
    811 7ooy:B (1.9) BS01 05Z 2.4.2.1 GO:0003824 ... P56463 35437103
    812 7ooz:B (1.7) BS01 05Q 2.4.2.1 GO:0003824 ... P56463 35437103
    813 7op9:A (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    814 7op9:B (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    815 7op9:C (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    816 7op9:D (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    817 7op9:E (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    818 7op9:F (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    819 7op9:G (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    820 7op9:H (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    821 7op9:I (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    822 7op9:J (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    823 7op9:K (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    824 7op9:L (1.5) BS01 06K 2.4.2.1 GO:0003824 ... P56463 35437103
    825 7opa:C (2.0) BS01 05Z 2.4.2.1 GO:0003824 ... P56463 35437103
    826 7opa:H (2.0) BS01 05Z 2.4.2.1 GO:0003824 ... P56463 35437103
    827 7w1g:A (1.86) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    828 7w1g:B (1.86) BS01 EPZ 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    829 7w1g:C (1.86) BS01 87E 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    830 7w1g:D (1.86) BS01 87E 1.10.3.-
    2.4.2.1
    2.4.2.28
    3.5.4.4    		 GO:0000270 ... P33644 35164571
    831 7zsl:A (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    832 7zsl:B (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    833 7zsl:C (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    834 7zsl:D (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    835 7zsl:E (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    836 7zsl:F (1.8) BS01 JTO 2.4.2.1 GO:0000255 ... P00491 37134237
    837 7zsm:A (2.65) BS01 JU9 2.4.2.1 GO:0000255 ... P00491 37134237
    838 7zsn:A (2.36) BS01 JSI 2.4.2.1 GO:0000255 ... P00491 37134237
    839 7zsn:A (2.36) BS02 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    840 7zsn:A (2.36) BS03 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    841 7zso:A (1.95) BS01 JTC 2.4.2.1 GO:0000255 ... P00491 37134237
    842 7zso:B (1.95) BS01 JTC 2.4.2.1 GO:0000255 ... P00491 37134237
    843 7zso:C (1.95) BS01 JTC 2.4.2.1 GO:0000255 ... P00491 37134237
    844 7zsp:A (2.29) BS01 JT3 2.4.2.1 GO:0000255 ... P00491 37134237
    845 7zsp:A (2.29) BS02 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    846 7zsp:A (2.29) BS03 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    847 7zsp:A (2.29) BS04 TEW 2.4.2.1 GO:0000255 ... P00491 37134237
    848 7zsq:A (1.77) BS01 JTO 2.4.2.1 GO:0003824 ... P9WP01 37134237
    849 7zsq:A (1.77) BS02 TEW 2.4.2.1 GO:0003824 ... P9WP01 37134237
    850 7zsq:B (1.77) BS01 TEW 2.4.2.1 GO:0003824 ... P9WP01 37134237
    851 7zsq:B (1.77) BS02 JTO 2.4.2.1 GO:0003824 ... P9WP01 37134237
    852 7zsq:B (1.77) BS03 P4K 2.4.2.1 GO:0003824 ... P9WP01 37134237
    853 7zsq:C (1.77) BS01 JTO 2.4.2.1 GO:0003824 ... P9WP01 37134237
    854 7zsr:A (1.97) BS01 JSI 2.4.2.1 GO:0003824 ... P9WP01 37134237
    855 7zsr:B (1.97) BS01 JSI 2.4.2.1 GO:0003824 ... P9WP01 37134237
    856 7zsr:C (1.97) BS01 JSI 2.4.2.1 GO:0003824 ... P9WP01 37134237
    857 8c25:A (1.56) BS01 JU9 2.4.2.1 GO:0003824 ... P9WP01 37134237
    858 8c25:B (1.56) BS01 JU9 2.4.2.1 GO:0003824 ... P9WP01 37134237
    859 8swp:A (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    860 8swp:B (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    861 8swp:D (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    862 8swp:E (2.1) BS01 HPA 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    863 8swq:A (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    864 8swq:B (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    865 8swq:D (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    866 8swq:E (1.979) BS01 DIH 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    867 8swr:A (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    868 8swr:B (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    869 8swr:D (2.3) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    870 8sws:A (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    871 8sws:B (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    872 8sws:D (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    873 8sws:E (1.99) BS01 IM5 2.4.2.1 GO:0003824 ... Q6CSZ6 37812583
    874 8swt:A (1.66) BS01 IMH 2.4.2.1 GO:0003824 ... Q5LAA3 37812583
    875 8swt:B (1.66) BS01 IMH 2.4.2.1 GO:0003824 ... Q5LAA3 37812583
    876 8swu:A (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    877 8swu:B (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    878 8swu:C (2.34) BS01 IMH 2.4.2.1 GO:0003824 ... A0A0H2YR30 37812583
    879 8w7h:A (1.85) BS01 XUH 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 38141766
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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