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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    761801 9icf:A (3.0) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761802 9icg:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761803 9icg:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761804 9icg:A (3.0) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761805 9icg:A (3.0) BS04 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761806 9ich:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761807 9ich:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761808 9ich:A (2.9) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761809 9ich:A (2.9) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761810 9ici:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761811 9ici:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761812 9ici:A (3.1) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761813 9icj:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761814 9icj:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761815 9ick:A (2.7) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761816 9ick:A (2.7) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761817 9icl:A (2.8) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761818 9icl:A (2.8) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761819 9icl:A (2.8) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761820 9icl:A (2.8) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841120
    761821 9icm:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    761822 9icm:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    761823 9icn:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761824 9icn:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761825 9icn:A (3.0) BS03 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761826 9ico:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761827 9ico:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761828 9icp:A (3.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761829 9icp:A (3.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761830 9icq:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761831 9icq:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761832 9icq:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761833 9icq:A (2.9) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761834 9icr:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761835 9icr:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761836 9icr:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761837 9icr:A (3.0) BS04 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761838 9icr:A (3.0) BS05 DCP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761839 9ics:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761840 9ics:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761841 9ics:A (2.9) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761842 9ics:A (2.9) BS04 DCT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761843 9ict:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761844 9ict:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761845 9ict:A (3.0) BS03 MN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761846 9ict:A (3.0) BS04 DGT 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761847 9icu:A (2.9) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761848 9icu:A (2.9) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761849 9icu:A (2.9) BS03 TTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119 BindingDB: IC50=1400nM
    761850 9icv:A (2.7) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761851 9icv:A (2.7) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761852 9icv:A (2.7) BS03 ZN 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761853 9icv:A (2.7) BS04 DTP 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841119
    761854 9icw:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    761855 9icw:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    761856 9icx:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    761857 9icx:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    761858 9icy:A (3.0) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    761859 9icy:A (3.0) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18    		 GO:0001701 ... P06746 8841118
    761860 9iil:A (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    761861 9iil:B (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    761862 9iil:C (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    761863 9iil:D (2.2) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    761864 9iim:A (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    761865 9iim:B (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    761866 9iim:C (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    761867 9iim:D (2.74) BS01 NAD N/A GO:0000166 ... A0A059ZTK9 N/A
    761868 9iiw:R (3.15) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    761869 9iiw:R (3.15) BS02 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    761870 9iix:R (2.89) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    761871 9iix:R (2.89) BS02 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    761872 9ij6:A (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    761873 9ij6:B (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    761874 9ij6:C (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    761875 9ij6:C (2.4) BS02 MG N/A GO:0000166 ... A0A059ZTK9 N/A
    761876 9ij6:D (2.4) BS01 AMP N/A GO:0000166 ... A0A059ZTK9 N/A
    761877 9ij9:R (2.7) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    761878 9ij9:R (2.7) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    761879 9ija:R (3.05) BS01 A1AEI N/A GO:0001580 ... Q9NYV8 38969802
    761880 9ija:R (3.05) BS02 CLR N/A GO:0001580 ... Q9NYV8 38969802
    761881 9ijp:C (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    761882 9ijp:L (3.1) BS01 7TT N/A GO:0000122 ... P37840 N/A
    761883 9ild:A (2.179) BS01 peptide N/A GO:0006508 ... A0A3J1GR98 N/A
    761884 9ild:A (2.179) BS02 ZN N/A GO:0006508 ... A0A3J1GR98 N/A
    761885 9ins:B (1.7) BS01 peptide ? GO:0005179 ... P01315 1504238
    761886 9int:A (1.56) BS01 GAL N/A GO:0004553 ... A0A1B1Y771 39214858
    761887 9int:A (1.56) BS02 9RN N/A GO:0004553 ... A0A1B1Y771 39214858
    761888 9int:A (1.56) BS03 G4S N/A GO:0004553 ... A0A1B1Y771 39214858
    761889 9iq9:A (1.58) BS01 MN N/A GO:0004053 ... D2Z025 N/A
    761890 9iq9:A (1.58) BS02 MN N/A GO:0004053 ... D2Z025 N/A
    761891 9iq9:B (1.58) BS01 CU1 N/A GO:0004053 ... D2Z025 N/A
    761892 9iq9:B (1.58) BS02 CU1 N/A GO:0004053 ... D2Z025 N/A
    761893 9iq9:B (1.58) BS03 CU1 N/A GO:0004053 ... D2Z025 N/A
    761894 9jdw:A (2.5) BS01 ABA 2.1.4.1 GO:0005515 ... P50440 9915841
    761895 9ldb:A (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    761896 9ldb:B (2.2) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    761897 9ldt:A (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    761898 9ldt:B (2.0) BS01 NAD 1.1.1.27 GO:0003824 ... P00339 1678537
    761899 9lpr:A (2.2) BS01 peptide 3.4.21.12 GO:0004252 ... P00778 1931963
    761900 9lyz:A (2.5) BS01 AMU 3.2.1.17 GO:0003796 ... P00698 514367
    761901 9mht:A (2.39) BS01 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    761902 9mht:A (2.39) BS02 dna 2.1.1.37 GO:0003677 ... P05102 9783745
    761903 9mht:A (2.39) BS03 SAH 2.1.1.37 GO:0003677 ... P05102 9783745
    761904 9nse:A (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    761905 9nse:A (2.24) BS02 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    761906 9nse:A (2.24) BS03 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    761907 9nse:A (2.24) BS04 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    761908 9nse:A (2.24) BS05 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    761909 9nse:B (2.24) BS01 ZN 1.14.13.39 GO:0004517 ... P29473 11051558
    761910 9nse:B (2.24) BS02 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    761911 9nse:B (2.24) BS03 HEM 1.14.13.39 GO:0004517 ... P29473 11051558
    761912 9nse:B (2.24) BS04 H4B 1.14.13.39 GO:0004517 ... P29473 11051558
    761913 9nse:B (2.24) BS05 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    761914 9nse:B (2.24) BS06 ISU 1.14.13.39 GO:0004517 ... P29473 11051558 MOAD: Ki=0.039uM
    761915 9pcy:A (-1.00) BS01 CU ? GO:0005507 ... P00287 1920431
    761916 9rsa:B (1.8) BS01 ADU 4.6.1.18 GO:0003676 ... P61823 2340284
    761917 9rub:A (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    761918 9rub:B (2.6) BS01 RUB 4.1.1.39 GO:0000287 ... P04718 1905726
    761919 9rub:B (2.6) BS02 MG 4.1.1.39 GO:0000287 ... P04718 1905726
    761920 9xia:A (1.9) BS01 DFR 5.3.1.5 GO:0000287 ... P24300 2734296
    761921 9xia:A (1.9) BS02 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    761922 9xia:A (1.9) BS03 MN 5.3.1.5 GO:0000287 ... P24300 2734296
    761923 9xim:A (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    761924 9xim:A (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    761925 9xim:A (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    761926 9xim:B (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    761927 9xim:B (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    761928 9xim:B (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    761929 9xim:C (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    761930 9xim:C (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    761931 9xim:C (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    761932 9xim:D (2.4) BS01 XLS 5.3.1.5 GO:0000287 ... P12851 1610791
    761933 9xim:D (2.4) BS02 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    761934 9xim:D (2.4) BS03 MN 5.3.1.5 GO:0000287 ... P12851 1610791
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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