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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    761401 9f3y:D (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    761402 9f3y:E (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    761403 9f3y:F (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    761404 9f3y:G (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    761405 9f3y:H (2.9) BS01 A1H9L 4.3.99.4 GO:0003824 ... A0A486V7R5 N/A
    761406 9f4d:A (1.5) BS01 JH1 ? GO:0003676 ... P09651 N/A
    761407 9f4e:A (1.57) BS01 VZM ? GO:0003676 ... P09651 N/A
    761408 9f4f:A (1.4) BS01 A1H9T ? GO:0003676 ... P09651 N/A
    761409 9f4g:A (1.4) BS01 SZE ? GO:0003676 ... P09651 N/A
    761410 9f4h:A (1.4) BS01 NUY ? GO:0003676 ... P09651 N/A
    761411 9f4h:A (1.4) BS02 NUY ? GO:0003676 ... P09651 N/A
    761412 9f4j:A (1.4) BS01 NWP ? GO:0003676 ... P09651 N/A
    761413 9f4k:A (1.8) BS01 A1H9R ? GO:0003676 ... P09651 N/A
    761414 9f4l:A (1.4) BS01 WGP ? GO:0003676 ... P09651 N/A
    761415 9f4m:A (1.39) BS01 A1H97 ? GO:0003676 ... P09651 N/A
    761416 9f4n:A (1.4) BS01 O3J ? GO:0003676 ... P09651 N/A
    761417 9f4o:A (1.4) BS01 A1H95 ? GO:0003676 ... P09651 N/A
    761418 9f4p:A (1.4) BS01 Q49 ? GO:0003676 ... P09651 N/A
    761419 9f4q:A (1.4) BS01 A1H9S ? GO:0003676 ... P09651 N/A
    761420 9f4r:A (1.59) BS01 K3J ? GO:0003676 ... P09651 N/A
    761421 9f4s:A (1.4) BS01 JGA ? GO:0003676 ... P09651 N/A
    761422 9f4t:A (1.42) BS01 WZY ? GO:0003676 ... P09651 N/A
    761423 9f4u:A (1.4) BS01 LXA ? GO:0003676 ... P09651 N/A
    761424 9f4v:A (1.4) BS01 UQJ ? GO:0003676 ... P09651 N/A
    761425 9f4w:A (1.6) BS01 O0M ? GO:0003676 ... P09651 N/A
    761426 9f4x:A (1.6) BS01 HWH ? GO:0003676 ... P09651 N/A
    761427 9f4y:A (1.4) BS01 W0S ? GO:0003676 ... P09651 N/A
    761428 9f4z:A (1.6) BS01 9KS ? GO:0003676 ... P09651 N/A
    761429 9f50:A (1.5) BS01 K2G ? GO:0003676 ... P09651 N/A
    761430 9f51:A (1.5) BS01 A1H9V ? GO:0003676 ... P09651 N/A
    761431 9f52:A (1.5) BS01 A1H9W ? GO:0003676 ... P09651 N/A
    761432 9f53:A (1.8) BS01 K3A ? GO:0003676 ... P09651 N/A
    761433 9f54:A (1.7) BS01 K3Y ? GO:0003676 ... P09651 N/A
    761434 9f55:A (1.55) BS01 A1H9U ? GO:0003676 ... P09651 N/A
    761435 9f55:A (1.55) BS02 A1H9U ? GO:0003676 ... P09651 N/A
    761436 9f5c:A (1.45) BS01 LJA ? GO:0003676 ... P09651 N/A
    761437 9f5d:A (1.6) BS01 A1H9X ? GO:0003676 ... P09651 N/A
    761438 9f5e:A (1.45) BS01 JFP ? GO:0003676 ... P09651 N/A
    761439 9f5f:A (1.4) BS01 W0J ? GO:0003676 ... P09651 N/A
    761440 9f5g:A (1.8) BS01 Z9I ? GO:0003676 ... P09651 N/A
    761441 9f5k:A (1.7) BS01 ONQ ? GO:0003676 ... P09651 N/A
    761442 9f7f:A (1.55) BS01 WNM ? GO:0003676 ... P09651 N/A
    761443 9f7h:A (1.43) BS01 JFM ? GO:0003676 ... P09651 N/A
    761444 9f8x:A (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    761445 9f8x:A (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    761446 9f8x:A (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    761447 9f8x:A (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    761448 9f8x:B (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    761449 9f8x:B (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    761450 9f8x:B (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    761451 9f8x:B (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    761452 9f8x:C (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    761453 9f8x:C (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    761454 9f8x:C (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    761455 9f8x:C (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    761456 9f8x:D (1.498) BS01 CUA N/A GO:0005507 ... A0A368XMX8 38720157
    761457 9f8x:D (1.498) BS02 CUK N/A GO:0005507 ... A0A368XMX8 38720157
    761458 9f8x:D (1.498) BS03 CA N/A GO:0005507 ... A0A368XMX8 38720157
    761459 9f8x:D (1.498) BS04 CA N/A GO:0005507 ... A0A368XMX8 38720157
    761460 9f9z:A (2.279) BS01 A1IBI N/A GO:0004336 ... P04062 38932616
    761461 9fbv:0 (2.4) BS01 rna N/A GO:0000027 ... P0A7N9 38826346
    761462 9fbv:1 (2.4) BS01 rna N/A GO:0002181 ... P0A7P5 38826346
    761463 9fbv:2 (2.4) BS01 rna N/A GO:0002181 ... P0A7Q1 38826346
    761464 9fbv:4 (2.4) BS01 rna N/A GO:0002181 ... P0A7M9 38826346
    761465 9fbv:4 (2.4) BS02 rna N/A GO:0002181 ... P0A7M9 38826346
    761466 9fbv:4 (2.4) BS03 ZN N/A GO:0002181 ... P0A7M9 38826346
    761467 9fbv:B (2.4) BS01 rna N/A GO:0000028 ... P0A7V0 38826346
    761468 9fbv:C (2.4) BS01 rna N/A GO:0000028 ... P0A7V3 38826346
    761469 9fbv:D (2.4) BS01 rna N/A GO:0000028 ... P0A7V8 38826346
    761470 9fbv:E (2.4) BS01 rna N/A GO:0000028 ... P0A7W1 38826346
    761471 9fbv:F (2.4) BS01 rna N/A GO:0002181 ... P02358 38826346
    761472 9fbv:G (2.4) BS01 rna N/A GO:0000028 ... P02359 38826346
    761473 9fbv:H (2.4) BS01 rna N/A GO:0000028 ... P0A7W7 38826346
    761474 9fbv:I (2.4) BS01 rna N/A GO:0000049 ... P0A7X3 38826346
    761475 9fbv:I (2.4) BS02 rna N/A GO:0000049 ... P0A7X3 38826346
    761476 9fbv:J (2.4) BS01 rna N/A GO:0000049 ... P0A7R5 38826346
    761477 9fbv:K (2.4) BS01 rna N/A GO:0002181 ... P0A7R9 38826346
    761478 9fbv:L (2.4) BS01 rna N/A GO:0000049 ... P0A7S3 38826346
    761479 9fbv:M (2.4) BS01 rna N/A GO:0000049 ... P0A7S9 38826346
    761480 9fbv:M (2.4) BS02 rna N/A GO:0000049 ... P0A7S9 38826346
    761481 9fbv:N (2.4) BS01 rna N/A GO:0000028 ... P0AG59 38826346
    761482 9fbv:O (2.4) BS01 rna N/A GO:0000028 ... P0ADZ4 38826346
    761483 9fbv:O (2.4) BS02 rna N/A GO:0000028 ... P0ADZ4 38826346
    761484 9fbv:P (2.4) BS01 rna N/A GO:0000028 ... P0A7T3 38826346
    761485 9fbv:Q (2.4) BS01 rna N/A GO:0000028 ... P0AG63 38826346
    761486 9fbv:R (2.4) BS01 rna N/A GO:0002181 ... P0A7T7 38826346
    761487 9fbv:S (2.4) BS01 rna N/A GO:0000028 ... P0A7U3 38826346
    761488 9fbv:T (2.4) BS01 rna N/A GO:0000028 ... P0A7U7 38826346
    761489 9fbv:U (2.4) BS01 rna N/A GO:0000028 ... P68679 38826346
    761490 9fbv:c (2.4) BS01 rna N/A GO:0000027 ... P60422 38826346
    761491 9fbv:c (2.4) BS02 rna N/A GO:0000027 ... P60422 38826346
    761492 9fbv:d (2.4) BS01 rna N/A GO:0000027 ... P60438 38826346
    761493 9fbv:e (2.4) BS01 rna N/A GO:0001070 ... P60723 38826346
    761494 9fbv:f (2.4) BS01 rna N/A GO:0000027 ... P62399 38826346
    761495 9fbv:f (2.4) BS02 rna N/A GO:0000027 ... P62399 38826346
    761496 9fbv:f (2.4) BS03 rna N/A GO:0000027 ... P62399 38826346
    761497 9fbv:g (2.4) BS01 rna N/A GO:0000027 ... P0AG55 38826346
    761498 9fbv:h (2.4) BS01 rna N/A GO:0002181 ... P0A7R1 38826346
    761499 9fbv:i (2.4) BS01 rna N/A GO:0002181 ... P0AA10 38826346
    761500 9fbv:j (2.4) BS01 rna N/A GO:0002181 ... P0ADY3 38826346
    761501 9fbv:j (2.4) BS02 rna N/A GO:0002181 ... P0ADY3 38826346
    761502 9fbv:k (2.4) BS01 rna N/A GO:0002181 ... P02413 38826346
    761503 9fbv:l (2.4) BS01 rna N/A GO:0000027 ... P0ADY7 38826346
    761504 9fbv:l (2.4) BS02 rna N/A GO:0000027 ... P0ADY7 38826346
    761505 9fbv:m (2.4) BS01 rna N/A GO:0000027 ... P0AG44 38826346
    761506 9fbv:n (2.4) BS01 rna N/A GO:0002181 ... P0C018 38826346
    761507 9fbv:n (2.4) BS02 rna N/A GO:0002181 ... P0C018 38826346
    761508 9fbv:o (2.4) BS01 rna N/A GO:0000027 ... P0A7K6 38826346
    761509 9fbv:o (2.4) BS02 rna N/A GO:0000027 ... P0A7K6 38826346
    761510 9fbv:p (2.4) BS01 rna N/A GO:0000027 ... P0A7L3 38826346
    761511 9fbv:q (2.4) BS01 rna N/A GO:0002181 ... P0AG48 38826346
    761512 9fbv:r (2.4) BS01 rna N/A GO:0002181 ... P61175 38826346
    761513 9fbv:s (2.4) BS01 rna N/A GO:0000027 ... P0ADZ0 38826346
    761514 9fbv:t (2.4) BS01 rna N/A GO:0000027 ... P60624 38826346
    761515 9fbv:u (2.4) BS01 rna N/A GO:0000027 ... P68919 38826346
    761516 9fbv:u (2.4) BS02 rna N/A GO:0000027 ... P68919 38826346
    761517 9fbv:v (2.4) BS01 rna N/A GO:0000027 ... P0A7L8 38826346
    761518 9fbv:v (2.4) BS02 rna N/A GO:0000027 ... P0A7L8 38826346
    761519 9fbv:w (2.4) BS01 rna N/A GO:0000027 ... P0A7M2 38826346
    761520 9fbv:x (2.4) BS01 rna N/A GO:0000027 ... P0A7M6 38826346
    761521 9fbv:y (2.4) BS01 rna N/A GO:0000027 ... P0AG51 38826346
    761522 9fbv:y (2.4) BS02 rna N/A GO:0000027 ... P0AG51 38826346
    761523 9fbv:z (2.4) BS01 rna N/A GO:0000027 ... P0A7N4 38826346
    761524 9fdd:A (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    761525 9fdd:B (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    761526 9fdd:C (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    761527 9fdd:D (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    761528 9fdd:E (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    761529 9fdd:F (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    761530 9fdd:G (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    761531 9fdd:H (2.8) BS01 SAC N/A GO:0000976 ... P45600 38976018
    761532 9fdj:A (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    761533 9fdj:B (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761534 9fdj:B (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761535 9fdj:B (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    761536 9fdj:C (1.7) BS01 FES N/A GO:0003954 ... O66842 38960077
    761537 9fdj:D (1.7) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761538 9fdj:D (1.7) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761539 9fdj:D (1.7) BS03 NAI N/A GO:0046872 ... O66841 38960077
    761540 9fdk:A (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    761541 9fdk:B (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761542 9fdk:B (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761543 9fdk:C (1.8) BS01 FES N/A GO:0003954 ... O66842 38960077
    761544 9fdk:D (1.8) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761545 9fdk:D (1.8) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761546 9fdv:A (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    761547 9fdv:B (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761548 9fdv:B (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761549 9fdv:C (1.986) BS01 FES N/A GO:0003954 ... O66842 38960077
    761550 9fdv:D (1.986) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761551 9fdv:D (1.986) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761552 9fe0:A (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    761553 9fe0:B (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761554 9fe0:B (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761555 9fe0:B (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    761556 9fe0:C (2.2) BS01 FES N/A GO:0003954 ... O66842 38960077
    761557 9fe0:D (2.2) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761558 9fe0:D (2.2) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761559 9fe0:D (2.2) BS03 NAD N/A GO:0046872 ... O66841 38960077
    761560 9fe5:A (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    761561 9fe5:B (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761562 9fe5:B (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761563 9fe5:B (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    761564 9fe5:C (2.1) BS01 FES N/A GO:0003954 ... O66842 38960077
    761565 9fe5:D (2.1) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761566 9fe5:D (2.1) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761567 9fe5:D (2.1) BS03 NAI N/A GO:0046872 ... O66841 38960077
    761568 9fe7:A (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    761569 9fe7:B (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761570 9fe7:B (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761571 9fe7:C (2.28) BS01 FES N/A GO:0003954 ... O66842 38960077
    761572 9fe7:D (2.28) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761573 9fe7:D (2.28) BS02 FMN N/A GO:0046872 ... O66841 38960077
    761574 9fe8:A (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    761575 9fe8:B (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761576 9fe8:B (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761577 9fe8:C (2.34) BS01 FES N/A GO:0003954 ... O66842 38960077
    761578 9fe8:D (2.34) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761579 9fe8:D (2.34) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761580 9fea:A (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    761581 9fea:B (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761582 9fea:B (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761583 9fea:B (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    761584 9fea:C (1.66) BS01 FES N/A GO:0003954 ... O66842 38960077
    761585 9fea:D (1.66) BS01 SF4 N/A GO:0046872 ... O66841 38960077
    761586 9fea:D (1.66) BS02 FNR N/A GO:0046872 ... O66841 38960077
    761587 9fea:D (1.66) BS03 NAD N/A GO:0046872 ... O66841 38960077
    761588 9ffb:B (3.59) BS01 dna N/A GO:0005515 ... B0I564 N/A
    761589 9ffb:B (3.59) BS02 dna N/A GO:0005515 ... B0I564 N/A
    761590 9fff:B (3.68) BS01 dna N/A GO:0005515 ... B0I564 N/A
    761591 9fgq:A (2.5) BS01 dna N/A GO:0000786 ... P68431 39143240
    761592 9fgq:A (2.5) BS02 dna N/A GO:0000786 ... P68431 39143240
    761593 9fgq:B (2.5) BS01 dna N/A GO:0000781 ... P62805 39143240
    761594 9fgq:B (2.5) BS02 dna N/A GO:0000781 ... P62805 39143240
    761595 9fgq:C (2.5) BS01 peptide N/A GO:0000786 ... Q6FI13 39143240
    761596 9fgq:C (2.5) BS02 dna N/A GO:0000786 ... Q6FI13 39143240
    761597 9fgq:C (2.5) BS03 dna N/A GO:0000786 ... Q6FI13 39143240
    761598 9fgq:D (2.5) BS01 peptide N/A GO:0000781 ... P33778 39143240
    761599 9fgq:D (2.5) BS02 dna N/A GO:0000781 ... P33778 39143240
    761600 9fgq:D (2.5) BS03 dna N/A GO:0000781 ... P33778 39143240
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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