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BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    760801 9bdl:AL10 (2.8) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    760802 9bdl:AL11 (2.8) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    760803 9bdl:AL11 (2.8) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    760804 9bdl:AL11 (2.8) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    760805 9bdl:AL13 (2.8) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    760806 9bdl:AL13 (2.8) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    760807 9bdl:AL15 (2.8) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    760808 9bdl:AL15 (2.8) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    760809 9bdl:AL16 (2.8) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    760810 9bdl:AL18 (2.8) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    760811 9bdl:AL19 (2.8) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    760812 9bdl:AL19 (2.8) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    760813 9bdl:AL21 (2.8) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    760814 9bdl:AL21 (2.8) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    760815 9bdl:AL23 (2.8) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    760816 9bdl:AL26 (2.8) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    760817 9bdl:AL26 (2.8) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    760818 9bdl:AL27 (2.8) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    760819 9bdl:AL28 (2.8) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    760820 9bdl:AL29 (2.8) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    760821 9bdl:AL33 (2.8) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    760822 9bdl:AL34 (2.8) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    760823 9bdl:AL35 (2.8) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    760824 9bdl:AL35 (2.8) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    760825 9bdl:AL36 (2.8) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    760826 9bdl:AL38 (2.8) BS01 rna N/A GO:0003735 ... G1U001 38718836
    760827 9bdl:AL43 (2.8) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    760828 9bdl:ARAC (2.8) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    760829 9bdl:AS03 (2.8) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    760830 9bdl:AS04 (2.8) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    760831 9bdl:AS05 (2.8) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    760832 9bdl:AS06 (2.8) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    760833 9bdl:AS07 (2.8) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    760834 9bdl:AS08 (2.8) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    760835 9bdl:AS08 (2.8) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    760836 9bdl:AS09 (2.8) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    760837 9bdl:AS11 (2.8) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    760838 9bdl:AS13 (2.8) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    760839 9bdl:AS13 (2.8) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    760840 9bdl:AS16 (2.8) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    760841 9bdl:AS17 (2.8) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    760842 9bdl:AS18 (2.8) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    760843 9bdl:AS19 (2.8) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    760844 9bdl:AS22 (2.8) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    760845 9bdl:AS23 (2.8) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    760846 9bdl:AS27 (2.8) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    760847 9bdl:AS28 (2.8) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    760848 9bdl:AS29 (2.8) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    760849 9bdn:AL02 (3.1) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    760850 9bdn:AL02 (3.1) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    760851 9bdn:AL03 (3.1) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    760852 9bdn:AL04 (3.1) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    760853 9bdn:AL04 (3.1) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    760854 9bdn:AL05 (3.1) BS01 rna N/A GO:0000027 ... P19949 38718836
    760855 9bdn:AL05 (3.1) BS02 rna N/A GO:0000027 ... P19949 38718836
    760856 9bdn:AL07 (3.1) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    760857 9bdn:AL07 (3.1) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    760858 9bdn:AL09 (3.1) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    760859 9bdn:AL10 (3.1) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    760860 9bdn:AL10 (3.1) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    760861 9bdn:AL10 (3.1) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    760862 9bdn:AL11 (3.1) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    760863 9bdn:AL11 (3.1) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    760864 9bdn:AL11 (3.1) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    760865 9bdn:AL12 (3.1) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    760866 9bdn:AL13 (3.1) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    760867 9bdn:AL13 (3.1) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    760868 9bdn:AL15 (3.1) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    760869 9bdn:AL15 (3.1) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    760870 9bdn:AL16 (3.1) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    760871 9bdn:AL18 (3.1) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    760872 9bdn:AL19 (3.1) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    760873 9bdn:AL19 (3.1) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    760874 9bdn:AL21 (3.1) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    760875 9bdn:AL21 (3.1) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    760876 9bdn:AL23 (3.1) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    760877 9bdn:AL26 (3.1) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    760878 9bdn:AL26 (3.1) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    760879 9bdn:AL27 (3.1) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    760880 9bdn:AL28 (3.1) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    760881 9bdn:AL29 (3.1) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    760882 9bdn:AL33 (3.1) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    760883 9bdn:AL34 (3.1) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    760884 9bdn:AL35 (3.1) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    760885 9bdn:AL35 (3.1) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    760886 9bdn:AL36 (3.1) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    760887 9bdn:AL38 (3.1) BS01 rna N/A GO:0003735 ... G1U001 38718836
    760888 9bdn:AL43 (3.1) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    760889 9bdn:ARAC (3.1) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    760890 9bdn:AS03 (3.1) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    760891 9bdn:AS04 (3.1) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    760892 9bdn:AS05 (3.1) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    760893 9bdn:AS06 (3.1) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    760894 9bdn:AS07 (3.1) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    760895 9bdn:AS08 (3.1) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    760896 9bdn:AS08 (3.1) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    760897 9bdn:AS09 (3.1) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    760898 9bdn:AS11 (3.1) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    760899 9bdn:AS13 (3.1) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    760900 9bdn:AS16 (3.1) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    760901 9bdn:AS17 (3.1) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    760902 9bdn:AS18 (3.1) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    760903 9bdn:AS19 (3.1) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    760904 9bdn:AS22 (3.1) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    760905 9bdn:AS23 (3.1) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    760906 9bdn:AS27 (3.1) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    760907 9bdn:AS28 (3.1) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    760908 9bdn:AS29 (3.1) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    760909 9bdp:AL02 (3.7) BS01 rna N/A GO:0002181 ... G1TT27 38718836
    760910 9bdp:AL02 (3.7) BS02 rna N/A GO:0002181 ... G1TT27 38718836
    760911 9bdp:AL03 (3.7) BS01 rna N/A GO:0003723 ... G1TL06 38718836
    760912 9bdp:AL04 (3.7) BS01 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    760913 9bdp:AL04 (3.7) BS02 rna N/A GO:0003723 ... A0A5F9DCT1 38718836
    760914 9bdp:AL05 (3.7) BS01 rna N/A GO:0000027 ... P19949 38718836
    760915 9bdp:AL05 (3.7) BS02 rna N/A GO:0000027 ... P19949 38718836
    760916 9bdp:AL07 (3.7) BS01 rna N/A GO:0000463 ... G1SV32 38718836
    760917 9bdp:AL07 (3.7) BS02 rna N/A GO:0000463 ... G1SV32 38718836
    760918 9bdp:AL09 (3.7) BS01 rna N/A GO:0002181 ... G1SWI6 38718836
    760919 9bdp:AL10 (3.7) BS01 rna N/A GO:0000027 ... B7NZQ2 38718836
    760920 9bdp:AL10 (3.7) BS02 rna N/A GO:0000027 ... B7NZQ2 38718836
    760921 9bdp:AL10 (3.7) BS03 rna N/A GO:0000027 ... B7NZQ2 38718836
    760922 9bdp:AL11 (3.7) BS01 rna N/A GO:0003723 ... G1TUB8 38718836
    760923 9bdp:AL11 (3.7) BS02 rna N/A GO:0003723 ... G1TUB8 38718836
    760924 9bdp:AL11 (3.7) BS03 rna N/A GO:0003723 ... G1TUB8 38718836
    760925 9bdp:AL12 (3.7) BS01 rna N/A GO:0003723 ... G1SMR7 38718836
    760926 9bdp:AL12 (3.7) BS02 rna N/A GO:0003723 ... G1SMR7 38718836
    760927 9bdp:AL13 (3.7) BS01 rna N/A GO:0003723 ... G1TKB3 38718836
    760928 9bdp:AL13 (3.7) BS02 rna N/A GO:0003723 ... G1TKB3 38718836
    760929 9bdp:AL15 (3.7) BS01 rna N/A GO:0002181 ... G1T0C1 38718836
    760930 9bdp:AL15 (3.7) BS02 rna N/A GO:0002181 ... G1T0C1 38718836
    760931 9bdp:AL16 (3.7) BS01 rna N/A GO:0003729 ... G1TVS8 38718836
    760932 9bdp:AL18 (3.7) BS01 rna N/A GO:0002181 ... G1TFE0 38718836
    760933 9bdp:AL19 (3.7) BS01 rna N/A GO:0003723 ... G1TYL6 38718836
    760934 9bdp:AL19 (3.7) BS02 rna N/A GO:0003723 ... G1TYL6 38718836
    760935 9bdp:AL21 (3.7) BS01 rna N/A GO:0003735 ... G1SHQ2 38718836
    760936 9bdp:AL21 (3.7) BS02 rna N/A GO:0003735 ... G1SHQ2 38718836
    760937 9bdp:AL23 (3.7) BS01 rna N/A GO:0000122 ... G1T6D1 38718836
    760938 9bdp:AL23 (3.7) BS02 rna N/A GO:0000122 ... G1T6D1 38718836
    760939 9bdp:AL26 (3.7) BS01 rna N/A GO:0002181 ... G1SQH0 38718836
    760940 9bdp:AL26 (3.7) BS02 rna N/A GO:0002181 ... G1SQH0 38718836
    760941 9bdp:AL27 (3.7) BS01 rna N/A GO:0003735 ... G1TXF6 38718836
    760942 9bdp:AL28 (3.7) BS01 rna N/A GO:0003735 ... G1SNY0 38718836
    760943 9bdp:AL29 (3.7) BS01 rna N/A GO:0002181 ... G1SGR6 38718836
    760944 9bdp:AL33 (3.7) BS01 rna N/A GO:0000049 ... G1SF08 38718836
    760945 9bdp:AL34 (3.7) BS01 rna N/A GO:0003735 ... G1TXG5 38718836
    760946 9bdp:AL35 (3.7) BS01 rna N/A GO:0000463 ... G1SIT5 38718836
    760947 9bdp:AL35 (3.7) BS02 rna N/A GO:0000463 ... G1SIT5 38718836
    760948 9bdp:AL36 (3.7) BS01 rna N/A GO:0002181 ... G1TTQ5 38718836
    760949 9bdp:AL38 (3.7) BS01 rna N/A GO:0003735 ... G1U001 38718836
    760950 9bdp:AL43 (3.7) BS01 rna N/A GO:0005737 ... G1SY53 38718836
    760951 9bdp:ARAC (3.7) BS01 rna N/A GO:0001891 ... G1SJB4 38718836
    760952 9bdp:AS03 (3.7) BS01 rna N/A GO:0003677 ... G1TNM3 38718836
    760953 9bdp:AS04 (3.7) BS01 rna N/A GO:0003723 ... G1TA47 38718836
    760954 9bdp:AS05 (3.7) BS01 rna N/A GO:0000028 ... G1TFM5 38718836
    760955 9bdp:AS06 (3.7) BS01 rna N/A GO:0000082 ... G1TM55 38718836
    760956 9bdp:AS07 (3.7) BS01 rna N/A GO:0003735 ... G1SVB0 38718836
    760957 9bdp:AS08 (3.7) BS01 rna N/A GO:0000462 ... G1TJW1 38718836
    760958 9bdp:AS08 (3.7) BS02 rna N/A GO:0000462 ... G1TJW1 38718836
    760959 9bdp:AS09 (3.7) BS01 rna N/A GO:0003735 ... B7NZS8 38718836
    760960 9bdp:AS11 (3.7) BS01 rna N/A GO:0003735 ... G1TRM4 38718836
    760961 9bdp:AS13 (3.7) BS01 rna N/A GO:0003735 ... G1SP51 38718836
    760962 9bdp:AS13 (3.7) BS02 rna N/A GO:0003735 ... G1SP51 38718836
    760963 9bdp:AS16 (3.7) BS01 rna N/A GO:0000462 ... G1SGX4 38718836
    760964 9bdp:AS17 (3.7) BS01 rna N/A GO:0003735 ... G1TU13 38718836
    760965 9bdp:AS18 (3.7) BS01 rna N/A GO:0003735 ... G1TPG3 38718836
    760966 9bdp:AS19 (3.7) BS01 rna N/A GO:0000028 ... G1TN62 38718836
    760967 9bdp:AS22 (3.7) BS01 rna N/A GO:0003735 ... G1TG89 38718836
    760968 9bdp:AS23 (3.7) BS01 rna N/A GO:0003735 ... G1SZ47 38718836
    760969 9bdp:AS27 (3.7) BS01 rna N/A GO:0000028 ... G1TZ76 38718836
    760970 9bdp:AS28 (3.7) BS01 rna N/A GO:0000028 ... G1TIB4 38718836
    760971 9bdp:AS29 (3.7) BS01 rna N/A GO:0003735 ... G1U7M4 38718836
    760972 9bdp:EF1A (3.7) BS01 rna N/A GO:0000329 ... P02994 38718836
    760973 9bdp:EF1A (3.7) BS02 rna N/A GO:0000329 ... P02994 38718836
    760974 9bdu:A (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    760975 9bdu:A (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    760976 9bdu:B (2.03) BS01 dna ? GO:0003677 ... Q04207 38805268
    760977 9bdu:B (2.03) BS02 dna ? GO:0003677 ... Q04207 38805268
    760978 9bdv:A (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    760979 9bdv:A (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    760980 9bdv:B (1.9) BS01 dna ? GO:0003677 ... Q04207 38805268
    760981 9bdv:B (1.9) BS02 dna ? GO:0003677 ... Q04207 38805268
    760982 9bdw:A (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    760983 9bdw:A (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    760984 9bdw:B (1.87) BS01 dna ? GO:0003677 ... Q04207 38805268
    760985 9bdw:B (1.87) BS02 dna ? GO:0003677 ... Q04207 38805268
    760986 9bdx:A (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    760987 9bdx:A (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    760988 9bdx:B (3.6) BS01 dna ? GO:0003677 ... Q04207 38805268
    760989 9bdx:B (3.6) BS02 dna ? GO:0003677 ... Q04207 38805268
    760990 9bfh:A (2.62) BS01 A1AN8 ? GO:0005515 ... P31224 37921493
    760991 9bfm:A (2.71) BS01 A1AON ? GO:0005515 ... P31224 37921493
    760992 9bfn:A (2.71) BS01 A1AOE ? GO:0005515 ... P31224 37921493
    760993 9bft:A (2.44) BS01 A1AOF ? GO:0005515 ... P31224 37921493
    760994 9bfy:C (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    760995 9bfy:D (1.26) BS01 A1AOL 5.2.1.8 GO:0000413 ... P62937 N/A
    760996 9bg1:C (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    760997 9bg1:D (1.51) BS01 A1AOH 5.2.1.8 GO:0000413 ... P62937 N/A
    760998 9bh8:A (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    760999 9bh8:B (3.6) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    761000 9bh9:A (3.5) BS01 dna 2.7.7.49
    2.7.7.7
    3.6.4.12    		 GO:0003676 ... O75417 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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