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BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    759801 8yop:Sb (2.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    759802 8yop:Sc (2.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    759803 8yop:Sd (2.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    759804 8yop:Sd (2.2) BS02 ZN N/A GO:0002181 ... P62273 38942792
    759805 8yop:Sf (2.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    759806 8yop:Sg (2.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    759807 8you:A (1.8) BS01 SEK ? GO:0046872 ... A0A5C7ETD9 N/A
    759808 8you:A (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759809 8you:A (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759810 8you:A (1.8) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759811 8you:A (1.8) BS05 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759812 8you:B (1.8) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759813 8you:B (1.8) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759814 8you:B (1.8) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759815 8you:B (1.8) BS04 SE ? GO:0046872 ... A0A5C7ETD9 N/A
    759816 8yr2:A (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    759817 8yr2:A (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    759818 8yr2:A (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    759819 8yr2:A (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    759820 8yr2:A (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    759821 8yr2:A (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    759822 8yr2:A (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    759823 8yr2:A (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    759824 8yr2:A (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    759825 8yr2:A (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    759826 8yr2:A (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    759827 8yr2:A (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    759828 8yr2:B (2.89) BS01 41U ? GO:0003779 ... P23975 38750358
    759829 8yr2:B (2.89) BS02 PIO ? GO:0003779 ... P23975 38750358
    759830 8yr2:B (2.89) BS03 CLR ? GO:0003779 ... P23975 38750358
    759831 8yr2:B (2.89) BS04 CLR ? GO:0003779 ... P23975 38750358
    759832 8yr2:B (2.89) BS05 CLR ? GO:0003779 ... P23975 38750358
    759833 8yr2:B (2.89) BS06 CLR ? GO:0003779 ... P23975 38750358
    759834 8yr2:B (2.89) BS07 A1LX7 ? GO:0003779 ... P23975 38750358
    759835 8yr2:B (2.89) BS08 A1LX7 ? GO:0003779 ... P23975 38750358
    759836 8yr2:B (2.89) BS09 CLR ? GO:0003779 ... P23975 38750358
    759837 8yr2:B (2.89) BS10 CLR ? GO:0003779 ... P23975 38750358
    759838 8yr2:B (2.89) BS11 CLR ? GO:0003779 ... P23975 38750358
    759839 8yr2:B (2.89) BS12 CLR ? GO:0003779 ... P23975 38750358
    759840 8yrc:A (1.7) BS01 CL ? GO:0005829 ... A0A0H3JTJ5 38581951
    759841 8yrg:R (3.14) BS01 A1LZU ? GO:0004930 ... P0ABE7
    Q96LA9
    38718132
    759842 8yrt:A (2.0) BS01 PLP ? GO:0003824 ... F4KWH0 N/A
    759843 8yru:A (2.0) BS01 ZXN ? GO:0003824 ... F4KWH0 N/A
    759844 8yrv:A (1.7) BS01 OCF ? GO:0003824 ... F4KWH0 N/A
    759845 8ysa:A (1.5) BS01 peptide 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0008233 ... P0DTD1 N/A
    759846 8yt5:A (1.6) BS01 ADP 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    759847 8yt5:A (1.6) BS02 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    759848 8yt5:A (1.6) BS03 FE 3.6.1.41 GO:0000166 ... A0A0H2URF8 38701795
    759849 8yti:A (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    759850 8yti:A (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    759851 8yti:B (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    759852 8yti:B (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    759853 8yti:C (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    759854 8yti:C (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    759855 8yti:D (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    759856 8yti:D (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    759857 8yti:E (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    759858 8yti:E (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    759859 8yti:F (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    759860 8yti:F (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    759861 8yti:G (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    759862 8yti:G (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    759863 8yti:G (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    759864 8yti:H (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    759865 8yti:H (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    759866 8yti:K (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    759867 8yti:K (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    759868 8yti:L (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    759869 8yti:L (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    759870 8yti:M (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    759871 8yti:M (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    759872 8yti:N (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    759873 8yti:N (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    759874 8yti:O (2.7) BS01 dna ? GO:0000786 ... P68431 N/A
    759875 8yti:O (2.7) BS02 dna ? GO:0000786 ... P68431 N/A
    759876 8yti:P (2.7) BS01 dna ? GO:0000781 ... P62805 N/A
    759877 8yti:P (2.7) BS02 dna ? GO:0000781 ... P62805 N/A
    759878 8yti:Q (2.7) BS01 dna ? GO:0000786 ... P04908 N/A
    759879 8yti:Q (2.7) BS02 dna ? GO:0000786 ... P04908 N/A
    759880 8yti:Q (2.7) BS03 CA ? GO:0000786 ... P04908 N/A
    759881 8yti:R (2.7) BS01 dna ? GO:0000786 ... P06899 N/A
    759882 8yti:R (2.7) BS02 dna ? GO:0000786 ... P06899 N/A
    759883 8yti:U (2.7) BS01 dna ? GO:0000786 ... Q92522 N/A
    759884 8ytq:A (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    759885 8ytq:C (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    759886 8ytq:D (1.7) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    759887 8ytr:A (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    759888 8ytr:B (1.8) BS01 CU ? GO:0005507 ... W0DSL1 N/A
    759889 8yts:A (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    759890 8yts:B (1.15) BS01 HEC ? GO:0009055 ... W0DLP1 N/A
    759891 8ytx:A (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759892 8ytx:A (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759893 8ytx:A (2.53) BS03 A1D68 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759894 8ytx:B (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    759895 8ytx:B (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    759896 8ytx:C (2.53) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759897 8ytx:C (2.53) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759898 8ytx:D (2.53) BS01 GDP 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    759899 8ytx:D (2.53) BS02 A1D68 6.3.2.25 GO:0005525 ... A0A8D0VN39 N/A
    759900 8ytx:F (2.53) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    759901 8yu5:A (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759902 8yu5:A (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759903 8yu5:A (1.45) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759904 8yu5:B (1.45) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759905 8yu5:B (1.45) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759906 8yu6:A (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759907 8yu6:A (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759908 8yu6:A (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759909 8yu6:A (1.55) BS04 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759910 8yu6:B (1.55) BS01 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759911 8yu6:B (1.55) BS02 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759912 8yu6:B (1.55) BS03 CU ? GO:0046872 ... A0A5C7ETD9 N/A
    759913 8yu9:A (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759914 8yu9:A (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759915 8yu9:B (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    759916 8yu9:B (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    759917 8yu9:B (3.25) BS03 MG ? GO:0005525 ... A0A8D0VN39 N/A
    759918 8yu9:C (3.25) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759919 8yu9:C (3.25) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759920 8yu9:C (3.25) BS03 A1D7A 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759921 8yu9:D (3.25) BS01 A1D7A ? GO:0005525 ... A0A8D0VN39 N/A
    759922 8yu9:D (3.25) BS02 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    759923 8yu9:F (3.25) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    759924 8yua:A (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759925 8yua:A (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759926 8yua:A (2.37) BS03 MG 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759927 8yua:B (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    759928 8yua:B (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    759929 8yua:C (2.37) BS01 GTP 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759930 8yua:C (2.37) BS02 CA 3.6.5.- GO:0000226 ... Q2XVP4 N/A
    759931 8yua:D (2.37) BS01 GDP ? GO:0005525 ... A0A8D0VN39 N/A
    759932 8yua:D (2.37) BS02 A1D69 ? GO:0005525 ... A0A8D0VN39 N/A
    759933 8yua:F (2.37) BS01 ACP 6.3.2.25 GO:0046872 ... A0A8V0Z8P0 N/A
    759934 8yud:A (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759935 8yud:A (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759936 8yud:B (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759937 8yud:B (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759938 8yud:C (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759939 8yud:C (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759940 8yud:D (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759941 8yud:D (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759942 8yud:E (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759943 8yud:E (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759944 8yud:F (2.81) BS01 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759945 8yud:F (2.81) BS02 MG 5.3.1.5 GO:0000287 ... Q93HF3 N/A
    759946 8yut:R (2.7) BS01 A1D67 ? GO:0004930 ... P25021 38647423
    759947 8yut:R (2.7) BS02 CLR ? GO:0004930 ... P25021 38647423
    759948 8yuu:R (2.7) BS01 HSM ? GO:0004930 ... Q9Y5N1 38647423
    759949 8yuu:R (2.7) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    759950 8yuv:R (3.0) BS01 A1LY4 ? GO:0004930 ... Q9Y5N1 38647423
    759951 8yuv:R (3.0) BS02 CLR ? GO:0004930 ... Q9Y5N1 38647423
    759952 8yv8:A (3.0) BS01 dna N/A GO:0000786 ... P68431 N/A
    759953 8yv8:A (3.0) BS02 dna N/A GO:0000786 ... P68431 N/A
    759954 8yv8:B (3.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    759955 8yv8:B (3.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    759956 8yv8:C (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    759957 8yv8:C (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    759958 8yv8:D (3.0) BS01 dna N/A GO:0000786 ... O60814 N/A
    759959 8yv8:D (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    759960 8yv8:E (3.0) BS01 dna N/A GO:0000786 ... P68431 N/A
    759961 8yv8:E (3.0) BS02 dna N/A GO:0000786 ... P68431 N/A
    759962 8yv8:F (3.0) BS01 dna N/A GO:0000781 ... P62805 N/A
    759963 8yv8:F (3.0) BS02 dna N/A GO:0000781 ... P62805 N/A
    759964 8yv8:G (3.0) BS01 dna N/A GO:0000786 ... P04908 N/A
    759965 8yv8:G (3.0) BS02 dna N/A GO:0000786 ... P04908 N/A
    759966 8yv8:H (3.0) BS01 dna N/A GO:0000786 ... O60814 N/A
    759967 8yv8:H (3.0) BS02 dna N/A GO:0000786 ... O60814 N/A
    759968 8ywo:A (1.58) BS01 02A 3.8.1.2 GO:0009636 ... B2Z3V8 N/A
    759969 8yxm:A (2.93) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... C0JJA4 38760379
    759970 8yxm:A (2.93) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... C0JJA4 38760379
    759971 8yxp:A (3.01) BS01 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... C0JJA4 38760379
    759972 8yxp:A (3.01) BS02 ZN 2.1.1.-
    2.1.1.375
    2.7.7.48
    2.7.7.88
    3.6.1.-
    GO:0001172 ... C0JJA4 38760379
    759973 8yyn:A (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    759974 8yyn:B (1.9) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    759975 8yyo:A (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    759976 8yyo:B (1.7) BS01 XYP 3.2.1.8 GO:0004553 ... I3VTR8 N/A
    759977 8yyq:A (1.95) BS01 A1L0G ? GO:0000166 ... A0A0F7R6G7 38805007
    759978 8yyr:A (1.8) BS01 A1L0H ? GO:0000166 ... A0A0F7R6G7 38805007
    759979 8z1l:A (3.4) BS01 A1LX4 N/A GO:0003779 ... P23975 39048818
    759980 8z38:A (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    759981 8z38:B (2.17) BS01 CPI N/A GO:0000413 ... A0A4P7N8E2 N/A
    759982 8z3s:A (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    759983 8z3s:A (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    759984 8z3s:A (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    759985 8z3s:A (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    759986 8z3s:B (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    759987 8z3s:B (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    759988 8z3s:B (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    759989 8z3s:C (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    759990 8z3s:C (3.9) BS02 CA N/A GO:0001666 ... Q12791 39089879
    759991 8z3s:C (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    759992 8z3s:D (3.9) BS01 A1L04 N/A GO:0001666 ... Q12791 39089879
    759993 8z3s:D (3.9) BS02 Y01 N/A GO:0001666 ... Q12791 39089879
    759994 8z3s:D (3.9) BS03 CA N/A GO:0001666 ... Q12791 39089879
    759995 8z3s:D (3.9) BS04 CA N/A GO:0001666 ... Q12791 39089879
    759996 8z5l:A (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    759997 8z5l:A (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    759998 8z5l:A (2.65) BS03 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    759999 8z5l:B (2.65) BS01 ZN 3.5.2.6 GO:0008270 ... P52699 38690676
    760000 8z5l:B (2.65) BS02 ZN 3.5.2.6 GO:0008270 ... P52699 38690676

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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