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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    759601 8yoo:LD (2.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    759602 8yoo:LE (2.0) BS01 rna N/A GO:0000027 ... Q02878 38942792
    759603 8yoo:LF (2.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    759604 8yoo:LF (2.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    759605 8yoo:LG (2.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    759606 8yoo:LG (2.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    759607 8yoo:LH (2.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    759608 8yoo:LI (2.0) BS01 rna N/A GO:0000027 ... P27635 38942792
    759609 8yoo:LI (2.0) BS02 rna N/A GO:0000027 ... P27635 38942792
    759610 8yoo:LJ (2.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    759611 8yoo:LJ (2.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    759612 8yoo:LL (2.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    759613 8yoo:LL (2.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    759614 8yoo:LM (2.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    759615 8yoo:LN (2.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    759616 8yoo:LN (2.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    759617 8yoo:LO (2.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    759618 8yoo:LP (2.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    759619 8yoo:LP (2.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    759620 8yoo:LQ (2.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    759621 8yoo:LR (2.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    759622 8yoo:LR (2.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    759623 8yoo:LS (2.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    759624 8yoo:LS (2.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    759625 8yoo:LT (2.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    759626 8yoo:LT (2.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    759627 8yoo:LU (2.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    759628 8yoo:LV (2.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    759629 8yoo:LW (2.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    759630 8yoo:LW (2.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    759631 8yoo:LX (2.0) BS01 rna N/A GO:0000027 ... P62750 38942792
    759632 8yoo:LX (2.0) BS02 rna N/A GO:0000027 ... P62750 38942792
    759633 8yoo:LY (2.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    759634 8yoo:LY (2.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    759635 8yoo:LZ (2.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    759636 8yoo:La (2.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    759637 8yoo:Lb (2.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    759638 8yoo:Lc (2.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    759639 8yoo:Ld (2.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    759640 8yoo:Le (2.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    759641 8yoo:Le (2.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    759642 8yoo:Lf (2.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    759643 8yoo:Lg (2.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    759644 8yoo:Lg (2.0) BS02 MG N/A GO:0002181 ... P49207 38942792
    759645 8yoo:Lg (2.0) BS03 ZN N/A GO:0002181 ... P49207 38942792
    759646 8yoo:Lh (2.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    759647 8yoo:Lh (2.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    759648 8yoo:Li (2.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    759649 8yoo:Lj (2.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    759650 8yoo:Lj (2.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    759651 8yoo:Lj (2.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    759652 8yoo:Lk (2.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    759653 8yoo:Ll (2.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    759654 8yoo:Ll (2.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    759655 8yoo:Lm (2.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    759656 8yoo:Lm (2.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    759657 8yoo:Lo (2.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    759658 8yoo:Lo (2.0) BS02 ZN N/A GO:0002181 ... P83881 38942792
    759659 8yoo:Lp (2.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    759660 8yoo:Lp (2.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    759661 8yoo:Lr (2.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    759662 8yoo:Ls (2.0) BS01 rna N/A GO:0000027 ... P05388 38942792
    759663 8yoo:Lt (2.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    759664 8yoo:SA (2.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    759665 8yoo:SB (2.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    759666 8yoo:SC (2.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    759667 8yoo:SD (2.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    759668 8yoo:SE (2.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    759669 8yoo:SF (2.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    759670 8yoo:SG (2.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    759671 8yoo:SH (2.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    759672 8yoo:SI (2.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    759673 8yoo:SI (2.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    759674 8yoo:SJ (2.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    759675 8yoo:SK (2.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    759676 8yoo:SL (2.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    759677 8yoo:SL (2.0) BS02 rna N/A GO:0002181 ... P62280 38942792
    759678 8yoo:SM (2.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    759679 8yoo:SN (2.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    759680 8yoo:SN (2.0) BS02 rna N/A GO:0002181 ... P62277 38942792
    759681 8yoo:SO (2.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    759682 8yoo:SP (2.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    759683 8yoo:SQ (2.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    759684 8yoo:SR (2.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    759685 8yoo:SS (2.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    759686 8yoo:ST (2.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    759687 8yoo:SU (2.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    759688 8yoo:SW (2.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    759689 8yoo:SX (2.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    759690 8yoo:SY (2.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    759691 8yoo:SZ (2.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    759692 8yoo:Sa (2.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    759693 8yoo:Sa (2.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    759694 8yoo:Sb (2.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    759695 8yoo:Sc (2.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    759696 8yoo:Sd (2.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    759697 8yoo:Sd (2.0) BS02 ZN N/A GO:0002181 ... P62273 38942792
    759698 8yoo:Sf (2.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    759699 8yoo:Sf (2.0) BS02 ZN N/A GO:0002181 ... P62979 38942792
    759700 8yoo:Sg (2.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    759701 8yop:LA (2.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    759702 8yop:LA (2.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    759703 8yop:LA (2.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    759704 8yop:LB (2.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    759705 8yop:LC (2.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    759706 8yop:LC (2.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    759707 8yop:LD (2.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    759708 8yop:LD (2.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    759709 8yop:LE (2.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    759710 8yop:LF (2.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    759711 8yop:LF (2.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    759712 8yop:LG (2.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    759713 8yop:LG (2.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    759714 8yop:LH (2.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    759715 8yop:LI (2.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    759716 8yop:LI (2.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    759717 8yop:LJ (2.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    759718 8yop:LJ (2.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    759719 8yop:LL (2.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    759720 8yop:LL (2.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    759721 8yop:LM (2.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    759722 8yop:LN (2.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    759723 8yop:LN (2.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    759724 8yop:LO (2.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    759725 8yop:LP (2.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    759726 8yop:LP (2.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    759727 8yop:LQ (2.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    759728 8yop:LR (2.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    759729 8yop:LR (2.2) BS02 rna N/A GO:0002181 ... P84098 38942792
    759730 8yop:LS (2.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    759731 8yop:LS (2.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    759732 8yop:LT (2.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    759733 8yop:LT (2.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    759734 8yop:LU (2.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    759735 8yop:LV (2.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    759736 8yop:LW (2.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    759737 8yop:LW (2.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    759738 8yop:LX (2.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    759739 8yop:LX (2.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    759740 8yop:LY (2.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    759741 8yop:LY (2.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    759742 8yop:LZ (2.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    759743 8yop:La (2.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    759744 8yop:Lb (2.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    759745 8yop:Lc (2.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    759746 8yop:Ld (2.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    759747 8yop:Le (2.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    759748 8yop:Le (2.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    759749 8yop:Lf (2.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    759750 8yop:Lg (2.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    759751 8yop:Lg (2.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    759752 8yop:Lg (2.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    759753 8yop:Lh (2.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    759754 8yop:Lh (2.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    759755 8yop:Li (2.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    759756 8yop:Lj (2.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    759757 8yop:Lj (2.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    759758 8yop:Lj (2.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    759759 8yop:Lk (2.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    759760 8yop:Ll (2.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    759761 8yop:Ll (2.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    759762 8yop:Lm (2.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    759763 8yop:Lm (2.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    759764 8yop:Lo (2.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    759765 8yop:Lo (2.2) BS02 ZN N/A GO:0002181 ... P83881 38942792
    759766 8yop:Lp (2.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    759767 8yop:Lp (2.2) BS02 ZN N/A GO:0002181 ... P61513 38942792
    759768 8yop:Lr (2.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    759769 8yop:Ls (2.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    759770 8yop:Lt (2.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    759771 8yop:SA (2.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    759772 8yop:SB (2.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    759773 8yop:SC (2.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    759774 8yop:SD (2.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    759775 8yop:SE (2.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    759776 8yop:SF (2.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    759777 8yop:SG (2.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    759778 8yop:SH (2.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    759779 8yop:SI (2.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    759780 8yop:SI (2.2) BS02 rna N/A GO:0000462 ... P62241 38942792
    759781 8yop:SJ (2.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    759782 8yop:SK (2.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    759783 8yop:SL (2.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    759784 8yop:SL (2.2) BS02 rna N/A GO:0002181 ... P62280 38942792
    759785 8yop:SM (2.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    759786 8yop:SN (2.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    759787 8yop:SN (2.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    759788 8yop:SO (2.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    759789 8yop:SP (2.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    759790 8yop:SQ (2.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    759791 8yop:SR (2.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    759792 8yop:SS (2.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    759793 8yop:ST (2.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    759794 8yop:SU (2.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    759795 8yop:SW (2.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    759796 8yop:SX (2.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    759797 8yop:SY (2.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    759798 8yop:SZ (2.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    759799 8yop:Sa (2.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    759800 8yop:Sa (2.2) BS02 ZN N/A GO:0002181 ... P62854 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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