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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    759201 8y1m:A (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759202 8y1m:B (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    759203 8y1m:B (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    759204 8y1m:B (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    759205 8y1m:B (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    759206 8y1m:B (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759207 8y1m:B (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759208 8y1m:B (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759209 8y1m:B (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759210 8y1m:B (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759211 8y2h:B (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759212 8y2h:B (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759213 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759214 8y2h:F (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759215 8y2h:F (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759216 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759217 8y2h:G (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759218 8y2h:G (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759219 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759220 8y2h:H (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759221 8y2h:H (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759222 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    759223 8y2s:A (2.0) BS01 A1LXW 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    759224 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    759225 8y36:3 (2.65) BS01 rna N/A GO:0003735 ... P66277 38992047
    759226 8y36:C (2.65) BS01 rna N/A GO:0002181 ... P60433 38992047
    759227 8y36:D (2.65) BS01 rna N/A GO:0003735 ... P60450 38992047
    759228 8y36:E (2.65) BS01 rna N/A GO:0003735 ... P61060 38992047
    759229 8y36:F (2.65) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    759230 8y36:F (2.65) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    759231 8y36:G (2.65) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    759232 8y36:H (2.65) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    759233 8y36:I (2.65) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    759234 8y36:J (2.65) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    759235 8y36:K (2.65) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    759236 8y36:K (2.65) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    759237 8y36:L (2.65) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    759238 8y36:M (2.65) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    759239 8y36:M (2.65) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    759240 8y36:N (2.65) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    759241 8y36:O (2.65) BS01 rna N/A GO:0000027 ... P66109 38992047
    759242 8y36:P (2.65) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    759243 8y36:Q (2.65) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    759244 8y36:R (2.65) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    759245 8y36:S (2.65) BS01 rna N/A GO:0005840 ... P60736 38992047
    759246 8y37:3 (2.53) BS01 rna N/A GO:0003735 ... P66277 38992047
    759247 8y37:C (2.53) BS01 rna N/A GO:0002181 ... P60433 38992047
    759248 8y37:D (2.53) BS01 rna N/A GO:0003735 ... P60450 38992047
    759249 8y37:E (2.53) BS01 rna N/A GO:0003735 ... P61060 38992047
    759250 8y37:F (2.53) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    759251 8y37:F (2.53) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    759252 8y37:G (2.53) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    759253 8y37:H (2.53) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    759254 8y37:I (2.53) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    759255 8y37:J (2.53) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    759256 8y37:K (2.53) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    759257 8y37:K (2.53) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    759258 8y37:L (2.53) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    759259 8y37:M (2.53) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    759260 8y37:M (2.53) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    759261 8y37:N (2.53) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    759262 8y37:O (2.53) BS01 rna N/A GO:0000027 ... P66109 38992047
    759263 8y37:P (2.53) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    759264 8y37:Q (2.53) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    759265 8y37:R (2.53) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    759266 8y37:S (2.53) BS01 rna N/A GO:0005840 ... P60736 38992047
    759267 8y38:3 (2.58) BS01 rna N/A GO:0003735 ... P66277 38992047
    759268 8y38:C (2.58) BS01 rna N/A GO:0002181 ... P60433 38992047
    759269 8y38:D (2.58) BS01 rna N/A GO:0003735 ... P60450 38992047
    759270 8y38:E (2.58) BS01 rna N/A GO:0003735 ... P61060 38992047
    759271 8y38:F (2.58) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    759272 8y38:F (2.58) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    759273 8y38:G (2.58) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    759274 8y38:H (2.58) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    759275 8y38:I (2.58) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    759276 8y38:I (2.58) BS02 rna N/A GO:0003735 ... Q7A081 38992047
    759277 8y38:J (2.58) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    759278 8y38:K (2.58) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    759279 8y38:K (2.58) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    759280 8y38:L (2.58) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    759281 8y38:M (2.58) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    759282 8y38:M (2.58) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    759283 8y38:N (2.58) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    759284 8y38:O (2.58) BS01 rna N/A GO:0000027 ... P66109 38992047
    759285 8y38:P (2.58) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    759286 8y38:Q (2.58) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    759287 8y38:R (2.58) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    759288 8y38:S (2.58) BS01 rna N/A GO:0005840 ... P60736 38992047
    759289 8y38:b (2.58) BS01 rna N/A GO:0003735 ... A0A2X2M020 38992047
    759290 8y38:c (2.58) BS01 rna N/A GO:0003729 ... P66554 38992047
    759291 8y38:d (2.58) BS01 rna N/A GO:0003735 ... P66564 38992047
    759292 8y38:e (2.58) BS01 rna N/A GO:0005737 ... P66580 38992047
    759293 8y38:f (2.58) BS01 rna N/A GO:0003735 ... P66596 38992047
    759294 8y38:g (2.58) BS01 rna N/A GO:0000028 ... P66617 38992047
    759295 8y38:h (2.58) BS01 rna N/A GO:0003735 ... P66631 38992047
    759296 8y38:i (2.58) BS01 rna N/A GO:0003723 ... P66647 38992047
    759297 8y38:j (2.58) BS01 rna N/A GO:0000049 ... P66335 38992047
    759298 8y38:k (2.58) BS01 rna N/A GO:0005840 ... P66358 38992047
    759299 8y38:m (2.58) BS01 rna N/A GO:0000049 ... P66389 38992047
    759300 8y38:n (2.58) BS01 rna N/A GO:0003735 ... P66413 38992047
    759301 8y38:o (2.58) BS01 rna N/A GO:0005737 ... Q7A116 38992047
    759302 8y38:p (2.58) BS01 rna N/A GO:0003735 ... P66441 38992047
    759303 8y38:q (2.58) BS01 rna N/A GO:0003735 ... Q8NVB4 38992047
    759304 8y38:r (2.58) BS01 rna N/A GO:0003735 ... P66469 38992047
    759305 8y38:t (2.58) BS01 rna N/A GO:0005829 ... Q7A0R9 38992047
    759306 8y39:3 (3.6) BS01 rna N/A GO:0003735 ... P66277 38992047
    759307 8y39:C (3.6) BS01 rna N/A GO:0002181 ... P60433 38992047
    759308 8y39:D (3.6) BS01 rna N/A GO:0003735 ... P60450 38992047
    759309 8y39:E (3.6) BS01 rna N/A GO:0003735 ... P61060 38992047
    759310 8y39:F (3.6) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    759311 8y39:F (3.6) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    759312 8y39:G (3.6) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    759313 8y39:H (3.6) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    759314 8y39:I (3.6) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    759315 8y39:I (3.6) BS02 rna N/A GO:0003735 ... Q7A081 38992047
    759316 8y39:J (3.6) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    759317 8y39:K (3.6) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    759318 8y39:K (3.6) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    759319 8y39:L (3.6) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    759320 8y39:M (3.6) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    759321 8y39:M (3.6) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    759322 8y39:N (3.6) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    759323 8y39:O (3.6) BS01 rna N/A GO:0000027 ... P66109 38992047
    759324 8y39:P (3.6) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    759325 8y39:Q (3.6) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    759326 8y39:R (3.6) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    759327 8y39:S (3.6) BS01 rna N/A GO:0005840 ... P60736 38992047
    759328 8y39:b (3.6) BS01 rna N/A GO:0003735 ... A0A2X2M020 38992047
    759329 8y39:c (3.6) BS01 rna N/A GO:0003729 ... P66554 38992047
    759330 8y39:d (3.6) BS01 rna N/A GO:0003735 ... P66564 38992047
    759331 8y39:e (3.6) BS01 rna N/A GO:0005737 ... P66580 38992047
    759332 8y39:f (3.6) BS01 rna N/A GO:0003735 ... P66596 38992047
    759333 8y39:g (3.6) BS01 rna N/A GO:0000028 ... P66617 38992047
    759334 8y39:h (3.6) BS01 rna N/A GO:0003735 ... P66631 38992047
    759335 8y39:i (3.6) BS01 rna N/A GO:0003723 ... P66647 38992047
    759336 8y39:j (3.6) BS01 rna N/A GO:0000049 ... P66335 38992047
    759337 8y39:k (3.6) BS01 rna N/A GO:0005840 ... P66358 38992047
    759338 8y39:m (3.6) BS01 rna N/A GO:0000049 ... P66389 38992047
    759339 8y39:n (3.6) BS01 rna N/A GO:0003735 ... P66413 38992047
    759340 8y39:o (3.6) BS01 rna N/A GO:0005737 ... Q7A116 38992047
    759341 8y39:p (3.6) BS01 rna N/A GO:0003735 ... P66441 38992047
    759342 8y39:q (3.6) BS01 rna N/A GO:0003735 ... Q8NVB4 38992047
    759343 8y39:r (3.6) BS01 rna N/A GO:0003735 ... P66469 38992047
    759344 8y39:t (3.6) BS01 rna N/A GO:0005829 ... Q7A0R9 38992047
    759345 8y3x:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    759346 8y3x:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    759347 8y3x:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    759348 8y3x:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    759349 8y4j:A (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    759350 8y4j:C (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    759351 8y4j:D (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    759352 8y4u:A (2.4) BS01 FE ? GO:0016491 ... Q6ES21 38401306
    759353 8y65:A (3.51) BS01 URC N/A GO:0005351 ... Q9NRM0 38866775
    759354 8y66:A (3.28) BS01 AGI N/A GO:0005351 ... Q9NRM0 38866775
    759355 8y6b:A (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    759356 8y6b:A (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    759357 8y6b:A (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    759358 8y6b:B (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    759359 8y6b:B (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    759360 8y6b:B (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    759361 8y6b:C (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    759362 8y6b:C (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    759363 8y6b:C (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    759364 8y6b:D (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    759365 8y6b:E (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    759366 8y6b:F (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    759367 8y6h:A (2.49) BS01 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759368 8y6h:A (2.49) BS02 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759369 8y6h:A (2.49) BS03 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759370 8y6i:A (2.54) BS01 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759371 8y6i:A (2.54) BS02 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759372 8y6i:A (2.54) BS03 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759373 8y6i:A (2.54) BS04 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759374 8y6i:A (2.54) BS05 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759375 8y6i:A (2.54) BS06 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759376 8y6i:A (2.54) BS07 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759377 8y6i:A (2.54) BS08 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759378 8y6i:A (2.54) BS09 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759379 8y6i:A (2.54) BS10 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    759380 8y6o:C (3.38) BS01 rna ? GO:0000244 ... Q6P2Q9 38484052
    759381 8y6o:C (3.38) BS02 rna ? GO:0000244 ... Q6P2Q9 38484052
    759382 8y6o:C (3.38) BS03 IHP ? GO:0000244 ... Q6P2Q9 38484052
    759383 8y6o:D (3.38) BS01 GTP ? GO:0000398 ... Q15029 38484052
    759384 8y6o:F (3.38) BS01 rna ? GO:0000375 ... Q96DI7 38484052
    759385 8y6o:G (3.38) BS01 rna ? GO:0000244 ... O94906 38484052
    759386 8y6o:G (3.38) BS02 rna ? GO:0000244 ... O94906 38484052
    759387 8y6o:I (3.38) BS01 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    759388 8y6o:I (3.38) BS02 rna 3.6.4.13 GO:0000354 ... Q9BUQ8 38484052
    759389 8y6o:L (3.38) BS01 rna ? GO:0000244 ... Q8WWY3 38484052
    759390 8y6o:L (3.38) BS02 rna ? GO:0000244 ... Q8WWY3 38484052
    759391 8y6o:N (3.38) BS01 rna ? GO:0000244 ... O43395 38484052
    759392 8y6o:N (3.38) BS02 rna ? GO:0000244 ... O43395 38484052
    759393 8y6o:O (3.38) BS01 rna ? GO:0000398 ... P55769 38484052
    759394 8y6o:R (3.38) BS01 rna ? GO:0000398 ... Q86UT8 38484052
    759395 8y6o:R (3.38) BS02 rna ? GO:0000398 ... Q86UT8 38484052
    759396 8y6o:R (3.38) BS03 ZN ? GO:0000398 ... Q86UT8 38484052
    759397 8y6o:R (3.38) BS04 ZN ? GO:0000398 ... Q86UT8 38484052
    759398 8y6o:U (3.38) BS01 ZN 3.4.19.12 GO:0000245 ... Q53GS9 38484052
    759399 8y6o:V (3.38) BS01 ZN ? GO:0005515 ... Q9UDW3 38484052
    759400 8y6o:V (3.38) BS02 ZN ? GO:0005515 ... Q9UDW3 38484052
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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