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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    759001 8y0w:LG (3.4) BS01 rna ? GO:0000470 ... P62424 38698775
    759002 8y0w:LG (3.4) BS02 rna ? GO:0000470 ... P62424 38698775
    759003 8y0w:LH (3.4) BS01 rna ? GO:0002181 ... P32969 38698775
    759004 8y0w:LI (3.4) BS01 rna ? GO:0000027 ... Q96L21 38698775
    759005 8y0w:LI (3.4) BS02 rna ? GO:0000027 ... Q96L21 38698775
    759006 8y0w:LJ (3.4) BS01 rna ? GO:0000027 ... P62913 38698775
    759007 8y0w:LJ (3.4) BS02 rna ? GO:0000027 ... P62913 38698775
    759008 8y0w:LL (3.4) BS01 rna ? GO:0001824 ... P26373 38698775
    759009 8y0w:LL (3.4) BS02 rna ? GO:0001824 ... P26373 38698775
    759010 8y0w:LM (3.4) BS01 rna ? GO:0002181 ... P50914 38698775
    759011 8y0w:LN (3.4) BS01 rna ? GO:0002181 ... P61313 38698775
    759012 8y0w:LN (3.4) BS02 rna ? GO:0002181 ... P61313 38698775
    759013 8y0w:LO (3.4) BS01 rna ? GO:0002181 ... P40429 38698775
    759014 8y0w:LP (3.4) BS01 rna ? GO:0002181 ... P18621 38698775
    759015 8y0w:LP (3.4) BS02 rna ? GO:0002181 ... P18621 38698775
    759016 8y0w:LQ (3.4) BS01 rna ? GO:0002181 ... Q07020 38698775
    759017 8y0w:LR (3.4) BS01 rna ? GO:0002181 ... P84098 38698775
    759018 8y0w:LR (3.4) BS02 rna ? GO:0002181 ... P84098 38698775
    759019 8y0w:LS (3.4) BS01 rna ? GO:0002181 ... Q02543 38698775
    759020 8y0w:LS (3.4) BS02 rna ? GO:0002181 ... Q02543 38698775
    759021 8y0w:LT (3.4) BS01 rna ? GO:0002181 ... P46778 38698775
    759022 8y0w:LT (3.4) BS02 rna ? GO:0002181 ... P46778 38698775
    759023 8y0w:LU (3.4) BS01 rna ? GO:0002181 ... P35268 38698775
    759024 8y0w:LV (3.4) BS01 rna ? GO:0000122 ... P62829 38698775
    759025 8y0w:LW (3.4) BS01 rna ? GO:0000027 ... P83731 38698775
    759026 8y0w:LX (3.4) BS01 rna ? GO:0000027 ... P62750 38698775
    759027 8y0w:LX (3.4) BS02 rna ? GO:0000027 ... P62750 38698775
    759028 8y0w:LY (3.4) BS01 rna ? GO:0002181 ... P61254 38698775
    759029 8y0w:LY (3.4) BS02 rna ? GO:0002181 ... P61254 38698775
    759030 8y0w:LZ (3.4) BS01 rna ? GO:0002181 ... P61353 38698775
    759031 8y0w:La (3.4) BS01 rna ? GO:0002181 ... P46776 38698775
    759032 8y0w:Lb (3.4) BS01 rna ? GO:0002181 ... P47914 38698775
    759033 8y0w:Lc (3.4) BS01 rna ? GO:0002181 ... P62888 38698775
    759034 8y0w:Ld (3.4) BS01 rna ? GO:0002181 ... P62899 38698775
    759035 8y0w:Le (3.4) BS01 rna ? GO:0002181 ... P62910 38698775
    759036 8y0w:Le (3.4) BS02 MG ? GO:0002181 ... P62910 38698775
    759037 8y0w:Lf (3.4) BS01 rna ? GO:0000049 ... P18077 38698775
    759038 8y0w:Lg (3.4) BS01 rna ? GO:0002181 ... P49207 38698775
    759039 8y0w:Lg (3.4) BS02 MG ? GO:0002181 ... P49207 38698775
    759040 8y0w:Lg (3.4) BS03 ZN ? GO:0002181 ... P49207 38698775
    759041 8y0w:Lh (3.4) BS01 rna ? GO:0000463 ... P42766 38698775
    759042 8y0w:Lh (3.4) BS02 rna ? GO:0000463 ... P42766 38698775
    759043 8y0w:Li (3.4) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    759044 8y0w:Lj (3.4) BS01 rna ? GO:0002181 ... P61927 38698775
    759045 8y0w:Lj (3.4) BS02 rna ? GO:0002181 ... P61927 38698775
    759046 8y0w:Lj (3.4) BS03 ZN ? GO:0002181 ... P61927 38698775
    759047 8y0w:Lk (3.4) BS01 rna ? GO:0001501 ... P63173 38698775
    759048 8y0w:Ll (3.4) BS01 rna ? GO:0002181 ... P62891 38698775
    759049 8y0w:Ll (3.4) BS02 rna ? GO:0002181 ... P62891 38698775
    759050 8y0w:Lm (3.4) BS01 rna ? GO:0002181 ... P62987 38698775
    759051 8y0w:Lm (3.4) BS02 ZN ? GO:0002181 ... P62987 38698775
    759052 8y0w:Lo (3.4) BS01 rna ? GO:0002181 ... P83881 38698775
    759053 8y0w:Lo (3.4) BS02 ZN ? GO:0002181 ... P83881 38698775
    759054 8y0w:Lp (3.4) BS01 rna ? GO:0002181 ... P61513 38698775
    759055 8y0w:Lp (3.4) BS02 ZN ? GO:0002181 ... P61513 38698775
    759056 8y0w:Lr (3.4) BS01 rna ? GO:0002181 ... P46779 38698775
    759057 8y0w:S (3.4) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    759058 8y0w:SA (3.4) BS01 rna ? GO:0000028 ... P08865 38698775
    759059 8y0w:SB (3.4) BS01 rna ? GO:0002181 ... P61247 38698775
    759060 8y0w:SC (3.4) BS01 rna ? GO:0002181 ... P15880 38698775
    759061 8y0w:SD (3.4) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    759062 8y0w:SE (3.4) BS01 rna ? GO:0002181 ... P62701 38698775
    759063 8y0w:SF (3.4) BS01 rna ? GO:0000028 ... P46782 38698775
    759064 8y0w:SG (3.4) BS01 rna ? GO:0000082 ... P62753 38698775
    759065 8y0w:SH (3.4) BS01 rna ? GO:0001843 ... P62081 38698775
    759066 8y0w:SI (3.4) BS01 rna ? GO:0000462 ... P62241 38698775
    759067 8y0w:SI (3.4) BS02 rna ? GO:0000462 ... P62241 38698775
    759068 8y0w:SJ (3.4) BS01 rna ? GO:0002181 ... P46781 38698775
    759069 8y0w:SK (3.4) BS01 rna ? GO:0002181 ... P46783 38698775
    759070 8y0w:SL (3.4) BS01 rna ? GO:0002181 ... P62280 38698775
    759071 8y0w:SN (3.4) BS01 rna ? GO:0002181 ... P62277 38698775
    759072 8y0w:SO (3.4) BS01 rna ? GO:0000028 ... P62263 38698775
    759073 8y0w:SP (3.4) BS01 rna ? GO:0000028 ... P62841 38698775
    759074 8y0w:SQ (3.4) BS01 rna ? GO:0000462 ... P62249 38698775
    759075 8y0w:SR (3.4) BS01 rna ? GO:0002181 ... P08708 38698775
    759076 8y0w:SS (3.4) BS01 rna ? GO:0002181 ... P62269 38698775
    759077 8y0w:ST (3.4) BS01 rna ? GO:0000028 ... P39019 38698775
    759078 8y0w:SU (3.4) BS01 rna ? GO:0002181 ... P60866 38698775
    759079 8y0w:SW (3.4) BS01 rna ? GO:0002181 ... P62244 38698775
    759080 8y0w:SX (3.4) BS01 rna ? GO:0002181 ... P62266 38698775
    759081 8y0w:SY (3.4) BS01 rna ? GO:0002181 ... P62847 38698775
    759082 8y0w:SZ (3.4) BS01 rna ? GO:0002181 ... P62851 38698775
    759083 8y0w:Sa (3.4) BS01 rna ? GO:0002181 ... P62854 38698775
    759084 8y0w:Sb (3.4) BS01 rna ? GO:0000028 ... P42677 38698775
    759085 8y0w:Sc (3.4) BS01 rna ? GO:0000028 ... P62857 38698775
    759086 8y0w:Sd (3.4) BS01 rna ? GO:0002181 ... P62273 38698775
    759087 8y0w:Se (3.4) BS01 rna ? GO:0003735 ... P62861 38698775
    759088 8y0w:Sg (3.4) BS01 rna ? GO:0001891 ... P63244 38698775
    759089 8y0x:CB (3.3) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    759090 8y0x:CB (3.3) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    759091 8y0x:LA (3.3) BS01 rna ? GO:0002181 ... P62917 38698775
    759092 8y0x:LA (3.3) BS02 MG ? GO:0002181 ... P62917 38698775
    759093 8y0x:LB (3.3) BS01 rna ? GO:0002181 ... P39023 38698775
    759094 8y0x:LC (3.3) BS01 rna ? GO:0002181 ... P36578 38698775
    759095 8y0x:LC (3.3) BS02 rna ? GO:0002181 ... P36578 38698775
    759096 8y0x:LD (3.3) BS01 rna ? GO:0000027 ... P46777 38698775
    759097 8y0x:LD (3.3) BS02 rna ? GO:0000027 ... P46777 38698775
    759098 8y0x:LE (3.3) BS01 rna ? GO:0000027 ... Q02878 38698775
    759099 8y0x:LF (3.3) BS01 rna ? GO:0000463 ... P18124 38698775
    759100 8y0x:LF (3.3) BS02 rna ? GO:0000463 ... P18124 38698775
    759101 8y0x:LG (3.3) BS01 rna ? GO:0000470 ... P62424 38698775
    759102 8y0x:LG (3.3) BS02 rna ? GO:0000470 ... P62424 38698775
    759103 8y0x:LH (3.3) BS01 rna ? GO:0002181 ... P32969 38698775
    759104 8y0x:LI (3.3) BS01 rna ? GO:0000027 ... Q96L21 38698775
    759105 8y0x:LI (3.3) BS02 rna ? GO:0000027 ... Q96L21 38698775
    759106 8y0x:LJ (3.3) BS01 rna ? GO:0000027 ... P62913 38698775
    759107 8y0x:LJ (3.3) BS02 rna ? GO:0000027 ... P62913 38698775
    759108 8y0x:LL (3.3) BS01 rna ? GO:0001824 ... P26373 38698775
    759109 8y0x:LL (3.3) BS02 rna ? GO:0001824 ... P26373 38698775
    759110 8y0x:LM (3.3) BS01 rna ? GO:0002181 ... P50914 38698775
    759111 8y0x:LN (3.3) BS01 rna ? GO:0002181 ... P61313 38698775
    759112 8y0x:LN (3.3) BS02 rna ? GO:0002181 ... P61313 38698775
    759113 8y0x:LO (3.3) BS01 rna ? GO:0002181 ... P40429 38698775
    759114 8y0x:LP (3.3) BS01 rna ? GO:0002181 ... P18621 38698775
    759115 8y0x:LP (3.3) BS02 rna ? GO:0002181 ... P18621 38698775
    759116 8y0x:LQ (3.3) BS01 rna ? GO:0002181 ... Q07020 38698775
    759117 8y0x:LR (3.3) BS01 rna ? GO:0002181 ... P84098 38698775
    759118 8y0x:LR (3.3) BS02 rna ? GO:0002181 ... P84098 38698775
    759119 8y0x:LS (3.3) BS01 rna ? GO:0002181 ... Q02543 38698775
    759120 8y0x:LS (3.3) BS02 rna ? GO:0002181 ... Q02543 38698775
    759121 8y0x:LT (3.3) BS01 rna ? GO:0002181 ... P46778 38698775
    759122 8y0x:LT (3.3) BS02 rna ? GO:0002181 ... P46778 38698775
    759123 8y0x:LU (3.3) BS01 rna ? GO:0002181 ... P35268 38698775
    759124 8y0x:LV (3.3) BS01 rna ? GO:0000122 ... P62829 38698775
    759125 8y0x:LW (3.3) BS01 rna ? GO:0000027 ... P83731 38698775
    759126 8y0x:LX (3.3) BS01 rna ? GO:0000027 ... P62750 38698775
    759127 8y0x:LX (3.3) BS02 rna ? GO:0000027 ... P62750 38698775
    759128 8y0x:LY (3.3) BS01 rna ? GO:0002181 ... P61254 38698775
    759129 8y0x:LY (3.3) BS02 rna ? GO:0002181 ... P61254 38698775
    759130 8y0x:LZ (3.3) BS01 rna ? GO:0002181 ... P61353 38698775
    759131 8y0x:La (3.3) BS01 rna ? GO:0002181 ... P46776 38698775
    759132 8y0x:Lb (3.3) BS01 rna ? GO:0002181 ... P47914 38698775
    759133 8y0x:Lc (3.3) BS01 rna ? GO:0002181 ... P62888 38698775
    759134 8y0x:Ld (3.3) BS01 rna ? GO:0002181 ... P62899 38698775
    759135 8y0x:Le (3.3) BS01 rna ? GO:0002181 ... P62910 38698775
    759136 8y0x:Le (3.3) BS02 MG ? GO:0002181 ... P62910 38698775
    759137 8y0x:Lf (3.3) BS01 rna ? GO:0000049 ... P18077 38698775
    759138 8y0x:Lg (3.3) BS01 rna ? GO:0002181 ... P49207 38698775
    759139 8y0x:Lg (3.3) BS02 MG ? GO:0002181 ... P49207 38698775
    759140 8y0x:Lg (3.3) BS03 ZN ? GO:0002181 ... P49207 38698775
    759141 8y0x:Lh (3.3) BS01 rna ? GO:0000463 ... P42766 38698775
    759142 8y0x:Lh (3.3) BS02 rna ? GO:0000463 ... P42766 38698775
    759143 8y0x:Li (3.3) BS01 rna ? GO:0002181 ... Q9Y3U8 38698775
    759144 8y0x:Lj (3.3) BS01 rna ? GO:0002181 ... P61927 38698775
    759145 8y0x:Lj (3.3) BS02 rna ? GO:0002181 ... P61927 38698775
    759146 8y0x:Lj (3.3) BS03 ZN ? GO:0002181 ... P61927 38698775
    759147 8y0x:Lk (3.3) BS01 rna ? GO:0001501 ... P63173 38698775
    759148 8y0x:Ll (3.3) BS01 rna ? GO:0002181 ... P62891 38698775
    759149 8y0x:Ll (3.3) BS02 rna ? GO:0002181 ... P62891 38698775
    759150 8y0x:Lm (3.3) BS01 rna ? GO:0002181 ... P62987 38698775
    759151 8y0x:Lm (3.3) BS02 ZN ? GO:0002181 ... P62987 38698775
    759152 8y0x:Lo (3.3) BS01 rna ? GO:0002181 ... P83881 38698775
    759153 8y0x:Lo (3.3) BS02 rna ? GO:0002181 ... P83881 38698775
    759154 8y0x:Lp (3.3) BS01 rna ? GO:0002181 ... P61513 38698775
    759155 8y0x:Lp (3.3) BS02 ZN ? GO:0002181 ... P61513 38698775
    759156 8y0x:Lr (3.3) BS01 rna ? GO:0002181 ... P46779 38698775
    759157 8y0x:S (3.3) BS01 rna ? GO:0003723 ... Q8NC51 38698775
    759158 8y0x:SA (3.3) BS01 rna ? GO:0000028 ... P08865 38698775
    759159 8y0x:SB (3.3) BS01 rna ? GO:0002181 ... P61247 38698775
    759160 8y0x:SC (3.3) BS01 rna ? GO:0002181 ... P15880 38698775
    759161 8y0x:SD (3.3) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38698775
    759162 8y0x:SE (3.3) BS01 rna ? GO:0002181 ... P62701 38698775
    759163 8y0x:SF (3.3) BS01 rna ? GO:0000028 ... P46782 38698775
    759164 8y0x:SG (3.3) BS01 rna ? GO:0000082 ... P62753 38698775
    759165 8y0x:SH (3.3) BS01 rna ? GO:0001843 ... P62081 38698775
    759166 8y0x:SI (3.3) BS01 rna ? GO:0000462 ... P62241 38698775
    759167 8y0x:SI (3.3) BS02 rna ? GO:0000462 ... P62241 38698775
    759168 8y0x:SJ (3.3) BS01 rna ? GO:0002181 ... P46781 38698775
    759169 8y0x:SK (3.3) BS01 rna ? GO:0002181 ... P46783 38698775
    759170 8y0x:SL (3.3) BS01 rna ? GO:0002181 ... P62280 38698775
    759171 8y0x:SN (3.3) BS01 rna ? GO:0002181 ... P62277 38698775
    759172 8y0x:SO (3.3) BS01 rna ? GO:0000028 ... P62263 38698775
    759173 8y0x:SP (3.3) BS01 rna ? GO:0000028 ... P62841 38698775
    759174 8y0x:SQ (3.3) BS01 rna ? GO:0000462 ... P62249 38698775
    759175 8y0x:SR (3.3) BS01 rna ? GO:0002181 ... P08708 38698775
    759176 8y0x:SS (3.3) BS01 rna ? GO:0002181 ... P62269 38698775
    759177 8y0x:ST (3.3) BS01 rna ? GO:0000028 ... P39019 38698775
    759178 8y0x:SU (3.3) BS01 rna ? GO:0002181 ... P60866 38698775
    759179 8y0x:SW (3.3) BS01 rna ? GO:0002181 ... P62244 38698775
    759180 8y0x:SX (3.3) BS01 rna ? GO:0002181 ... P62266 38698775
    759181 8y0x:SY (3.3) BS01 rna ? GO:0002181 ... P62847 38698775
    759182 8y0x:SZ (3.3) BS01 rna ? GO:0002181 ... P62851 38698775
    759183 8y0x:Sa (3.3) BS01 rna ? GO:0002181 ... P62854 38698775
    759184 8y0x:Sa (3.3) BS02 ZN ? GO:0002181 ... P62854 38698775
    759185 8y0x:Sb (3.3) BS01 rna ? GO:0000028 ... P42677 38698775
    759186 8y0x:Sc (3.3) BS01 rna ? GO:0000028 ... P62857 38698775
    759187 8y0x:Sd (3.3) BS01 rna ? GO:0002181 ... P62273 38698775
    759188 8y0x:Se (3.3) BS01 rna ? GO:0003735 ... P62861 38698775
    759189 8y0x:Sg (3.3) BS01 rna ? GO:0001891 ... P63244 38698775
    759190 8y1j:A (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    759191 8y1j:A (2.3) BS02 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    759192 8y1j:B (2.3) BS01 2KT 4.3.1.19 GO:0003941 ... Q9I6G0 38417345
    759193 8y1m:A (1.8) BS01 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    759194 8y1m:A (1.8) BS02 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    759195 8y1m:A (1.8) BS03 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    759196 8y1m:A (1.8) BS04 XYP 3.2.1.8 GO:0005576 ... P07528 38565938
    759197 8y1m:A (1.8) BS05 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759198 8y1m:A (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759199 8y1m:A (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    759200 8y1m:A (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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