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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    758801 8xxm:SZ (3.2) BS01 rna ? GO:0002181 ... P62851 38641729
    758802 8xxm:Sa (3.2) BS01 rna ? GO:0002181 ... P62854 38641729
    758803 8xxm:Sa (3.2) BS02 ZN ? GO:0002181 ... P62854 38641729
    758804 8xxm:Sb (3.2) BS01 rna ? GO:0000028 ... P42677 38641729
    758805 8xxm:Sc (3.2) BS01 rna ? GO:0000028 ... P62857 38641729
    758806 8xxm:Sd (3.2) BS01 rna ? GO:0002181 ... P62273 38641729
    758807 8xxm:Sd (3.2) BS02 ZN ? GO:0002181 ... P62273 38641729
    758808 8xxm:Se (3.2) BS01 rna ? GO:0003735 ... P62861 38641729
    758809 8xxm:Sf (3.2) BS01 rna ? GO:0002181 ... P62979 38641729
    758810 8xxm:Sg (3.2) BS01 rna ? GO:0001891 ... P63244 38641729
    758811 8xxn:3B (3.6) BS01 rna ? GO:0001732 ... P55884 38641729
    758812 8xxn:3C (3.6) BS01 rna ? GO:0001732 ... Q99613 38641729
    758813 8xxn:3N (3.6) BS01 rna ? GO:0001732 ... O15371 38641729
    758814 8xxn:C1 (3.6) BS01 rna ? GO:0003723 ... P41567 38641729
    758815 8xxn:CD (3.6) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    758816 8xxn:SA (3.6) BS01 rna ? GO:0000028 ... P08865 38641729
    758817 8xxn:SB (3.6) BS01 rna ? GO:0002181 ... P61247 38641729
    758818 8xxn:SC (3.6) BS01 rna ? GO:0002181 ... P15880 38641729
    758819 8xxn:SD (3.6) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    758820 8xxn:SE (3.6) BS01 rna ? GO:0002181 ... P62701 38641729
    758821 8xxn:SF (3.6) BS01 rna ? GO:0000028 ... P46782 38641729
    758822 8xxn:SG (3.6) BS01 rna ? GO:0000082 ... P62753 38641729
    758823 8xxn:SH (3.6) BS01 rna ? GO:0001843 ... P62081 38641729
    758824 8xxn:SI (3.6) BS01 rna ? GO:0000462 ... P62241 38641729
    758825 8xxn:SJ (3.6) BS01 rna ? GO:0002181 ... P46781 38641729
    758826 8xxn:SK (3.6) BS01 rna ? GO:0002181 ... P46783 38641729
    758827 8xxn:SL (3.6) BS01 rna ? GO:0002181 ... P62280 38641729
    758828 8xxn:SM (3.6) BS01 rna ? GO:0002181 ... P25398 38641729
    758829 8xxn:SN (3.6) BS01 rna ? GO:0002181 ... P62277 38641729
    758830 8xxn:SO (3.6) BS01 rna ? GO:0000028 ... P62263 38641729
    758831 8xxn:SP (3.6) BS01 rna ? GO:0000028 ... P62841 38641729
    758832 8xxn:SQ (3.6) BS01 rna ? GO:0000462 ... P62249 38641729
    758833 8xxn:SR (3.6) BS01 rna ? GO:0002181 ... P08708 38641729
    758834 8xxn:SS (3.6) BS01 rna ? GO:0002181 ... P62269 38641729
    758835 8xxn:ST (3.6) BS01 rna ? GO:0000028 ... P39019 38641729
    758836 8xxn:SU (3.6) BS01 rna ? GO:0002181 ... P60866 38641729
    758837 8xxn:SW (3.6) BS01 rna ? GO:0002181 ... P62244 38641729
    758838 8xxn:SX (3.6) BS01 rna ? GO:0002181 ... P62266 38641729
    758839 8xxn:SY (3.6) BS01 rna ? GO:0002181 ... P62847 38641729
    758840 8xxn:SZ (3.6) BS01 rna ? GO:0002181 ... P62851 38641729
    758841 8xxn:Sa (3.6) BS01 rna ? GO:0002181 ... P62854 38641729
    758842 8xxn:Sa (3.6) BS02 ZN ? GO:0002181 ... P62854 38641729
    758843 8xxn:Sb (3.6) BS01 rna ? GO:0000028 ... P42677 38641729
    758844 8xxn:Sc (3.6) BS01 rna ? GO:0000028 ... P62857 38641729
    758845 8xxn:Sd (3.6) BS01 rna ? GO:0002181 ... P62273 38641729
    758846 8xxn:Sd (3.6) BS02 ZN ? GO:0002181 ... P62273 38641729
    758847 8xxn:Se (3.6) BS01 rna ? GO:0003735 ... P62861 38641729
    758848 8xxn:Sf (3.6) BS01 rna ? GO:0002181 ... P62979 38641729
    758849 8xxn:Sg (3.6) BS01 rna ? GO:0001891 ... P63244 38641729
    758850 8xy0:A (1.9) BS01 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    758851 8xy7:A (2.9) BS01 FAR ? GO:0004689 ... P46020 38548794
    758852 8xya:A (2.7) BS01 FAR ? GO:0004689 ... P46020 38548794
    758853 8xya:B (2.7) BS01 FAR ? GO:0005515 ... Q93100 38548794
    758854 8xyb:A (3.1) BS01 FAR ? GO:0004689 ... P46020 38548794
    758855 8xz3:C (3.6) BS01 rna N/A GO:0002181 ... A0QSD4 39029461
    758856 8xz3:D (3.6) BS01 rna N/A GO:0003735 ... A0QSD1 39029461
    758857 8xz3:E (3.6) BS01 rna N/A GO:0003735 ... A0QSD2 39029461
    758858 8xz3:F (3.6) BS01 rna N/A GO:0000049 ... A0QSG1 39029461
    758859 8xz3:F (3.6) BS02 rna N/A GO:0000049 ... A0QSG1 39029461
    758860 8xz3:G (3.6) BS01 rna N/A GO:0002181 ... A0QSG4 39029461
    758861 8xz3:H (3.6) BS01 rna N/A GO:0005840 ... A0R7F6 39029461
    758862 8xz3:J (3.6) BS01 rna N/A GO:0003735 ... A0QS45 39029461
    758863 8xz3:K (3.6) BS01 rna N/A GO:0003729 ... A0QSP8 39029461
    758864 8xz3:L (3.6) BS01 rna N/A GO:0003735 ... A0QSF9 39029461
    758865 8xz3:M (3.6) BS01 rna N/A GO:0003735 ... I7G436 39029461
    758866 8xz3:N (3.6) BS01 rna N/A GO:0000049 ... A0QSD8 39029461
    758867 8xz3:P (3.6) BS01 rna N/A GO:0005737 ... I7FGD9 39029461
    758868 8xz3:P (3.6) BS02 rna N/A GO:0005737 ... I7FGD9 39029461
    758869 8xz3:Q (3.6) BS01 rna N/A GO:0003735 ... A0QV42 39029461
    758870 8xz3:R (3.6) BS01 rna N/A GO:0000027 ... A0QYU6 39029461
    758871 8xz3:S (3.6) BS01 rna N/A GO:0003735 ... A0R151 39029461
    758872 8xz3:U (3.6) BS01 rna N/A GO:0000027 ... A0QSD3 39029461
    758873 8xz3:V (3.6) BS01 rna N/A GO:0005840 ... A0QSG0 39029461
    758874 8xz3:X (3.6) BS01 rna N/A GO:0003735 ... A0R150 39029461
    758875 8xz3:e (3.6) BS01 rna N/A GO:0003735 ... A0QYU7 39029461
    758876 8xzf:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    758877 8xzg:R (3.2) BS01 peptide ? GO:0001525 ... P35414 38428423
    758878 8xzh:R (2.6) BS01 peptide ? GO:0001525 ... P35414 38428423
    758879 8xzi:R (2.7) BS01 A1D5N ? GO:0001525 ... P35414 38428423
    758880 8xzj:R (3.0) BS01 peptide ? GO:0001525 ... P35414 38428423
    758881 8y0p:A (2.62) BS01 peptide ? GO:0007155 ... P35222 N/A
    758882 8y0p:A (2.62) BS02 PRO ? GO:0007155 ... P35222 N/A
    758883 8y0p:A (2.62) BS03 PRO ? GO:0007155 ... P35222 N/A
    758884 8y0p:B (2.62) BS01 PRO ? GO:0007155 ... P35222 N/A
    758885 8y0u:5 (3.59) BS01 rna ? GO:0002182 ... P23301 38698775
    758886 8y0u:LA (3.59) BS01 rna ? GO:0002181 ... P0CX45 38698775
    758887 8y0u:LA (3.59) BS02 MG ? GO:0002181 ... P0CX45 38698775
    758888 8y0u:LB (3.59) BS01 rna ? GO:0000027 ... P14126 38698775
    758889 8y0u:LC (3.59) BS01 rna ? GO:0002181 ... P10664 38698775
    758890 8y0u:LC (3.59) BS02 rna ? GO:0002181 ... P10664 38698775
    758891 8y0u:LD (3.59) BS01 rna ? GO:0000027 ... P26321 38698775
    758892 8y0u:LD (3.59) BS02 rna ? GO:0000027 ... P26321 38698775
    758893 8y0u:LE (3.59) BS01 rna ? GO:0000027 ... P05739 38698775
    758894 8y0u:LF (3.59) BS01 rna ? GO:0000463 ... P05737 38698775
    758895 8y0u:LF (3.59) BS02 rna ? GO:0000463 ... P05737 38698775
    758896 8y0u:LG (3.59) BS01 rna ? GO:0000470 ... P17076 38698775
    758897 8y0u:LG (3.59) BS02 rna ? GO:0000470 ... P17076 38698775
    758898 8y0u:LH (3.59) BS01 rna ? GO:0002181 ... P05738 38698775
    758899 8y0u:LI (3.59) BS01 rna ? GO:0000027 ... P41805 38698775
    758900 8y0u:LI (3.59) BS02 rna ? GO:0000027 ... P41805 38698775
    758901 8y0u:LJ (3.59) BS01 rna ? GO:0000027 ... Q3E757 38698775
    758902 8y0u:LJ (3.59) BS02 rna ? GO:0000027 ... Q3E757 38698775
    758903 8y0u:LL (3.59) BS01 rna ? GO:0002181 ... Q12690 38698775
    758904 8y0u:LM (3.59) BS01 rna ? GO:0000027 ... P36105 38698775
    758905 8y0u:LN (3.59) BS01 rna ? GO:0002181 ... P05748 38698775
    758906 8y0u:LN (3.59) BS02 rna ? GO:0002181 ... P05748 38698775
    758907 8y0u:LN (3.59) BS03 MG ? GO:0002181 ... P05748 38698775
    758908 8y0u:LO (3.59) BS01 rna ? GO:0000470 ... P26784 38698775
    758909 8y0u:LP (3.59) BS01 rna ? GO:0000448 ... P05740 38698775
    758910 8y0u:LP (3.59) BS02 rna ? GO:0000448 ... P05740 38698775
    758911 8y0u:LQ (3.59) BS01 rna ? GO:0002181 ... P0CX49 38698775
    758912 8y0u:LR (3.59) BS01 rna ? GO:0002181 ... P0CX82 38698775
    758913 8y0u:LR (3.59) BS02 rna ? GO:0002181 ... P0CX82 38698775
    758914 8y0u:LS (3.59) BS01 rna ? GO:0002181 ... P0CX23 38698775
    758915 8y0u:LS (3.59) BS02 rna ? GO:0002181 ... P0CX23 38698775
    758916 8y0u:LT (3.59) BS01 rna ? GO:0002181 ... Q02753 38698775
    758917 8y0u:LT (3.59) BS02 rna ? GO:0002181 ... Q02753 38698775
    758918 8y0u:LU (3.59) BS01 rna ? GO:0002181 ... P05749 38698775
    758919 8y0u:LV (3.59) BS01 rna ? GO:0002181 ... P0CX41 38698775
    758920 8y0u:LW (3.59) BS01 rna ? GO:0002181 ... P04449 38698775
    758921 8y0u:LX (3.59) BS01 rna ? GO:0000027 ... P04456 38698775
    758922 8y0u:LX (3.59) BS02 rna ? GO:0000027 ... P04456 38698775
    758923 8y0u:LY (3.59) BS01 rna ? GO:0002181 ... P05743 38698775
    758924 8y0u:LY (3.59) BS02 rna ? GO:0002181 ... P05743 38698775
    758925 8y0u:LZ (3.59) BS01 rna ? GO:0002181 ... P0C2H6 38698775
    758926 8y0u:La (3.59) BS01 rna ? GO:0002181 ... P02406 38698775
    758927 8y0u:Lb (3.59) BS01 rna ? GO:0002181 ... P05747 38698775
    758928 8y0u:Lc (3.59) BS01 rna ? GO:0002181 ... P14120 38698775
    758929 8y0u:Ld (3.59) BS01 rna ? GO:0002181 ... P0C2H8 38698775
    758930 8y0u:Le (3.59) BS01 rna ? GO:0002181 ... P38061 38698775
    758931 8y0u:Le (3.59) BS02 MG ? GO:0002181 ... P38061 38698775
    758932 8y0u:Lf (3.59) BS01 rna ? GO:0000027 ... P05744 38698775
    758933 8y0u:Lg (3.59) BS01 rna ? GO:0002181 ... P87262 38698775
    758934 8y0u:Lg (3.59) BS02 ZN ? GO:0002181 ... P87262 38698775
    758935 8y0u:Lh (3.59) BS01 rna ? GO:0000463 ... P0CX84 38698775
    758936 8y0u:Lh (3.59) BS02 rna ? GO:0000463 ... P0CX84 38698775
    758937 8y0u:Li (3.59) BS01 rna ? GO:0002181 ... P05745 38698775
    758938 8y0u:Lj (3.59) BS01 rna ? GO:0000448 ... P49166 38698775
    758939 8y0u:Lj (3.59) BS02 rna ? GO:0000448 ... P49166 38698775
    758940 8y0u:Lj (3.59) BS03 ZN ? GO:0000448 ... P49166 38698775
    758941 8y0u:Lk (3.59) BS01 rna ? GO:0002181 ... P49167 38698775
    758942 8y0u:Ll (3.59) BS01 rna ? GO:0002181 ... P04650 38698775
    758943 8y0u:Ll (3.59) BS02 rna ? GO:0002181 ... P04650 38698775
    758944 8y0u:Lm (3.59) BS01 rna ? GO:0000027 ... P0CH08 38698775
    758945 8y0u:Lm (3.59) BS02 ZN ? GO:0000027 ... P0CH08 38698775
    758946 8y0u:Lo (3.59) BS01 rna ? GO:0002181 ... P0CX27 38698775
    758947 8y0u:Lo (3.59) BS02 ZN ? GO:0002181 ... P0CX27 38698775
    758948 8y0u:Lp (3.59) BS01 rna ? GO:0002181 ... P0CX25 38698775
    758949 8y0u:Lp (3.59) BS02 ZN ? GO:0002181 ... P0CX25 38698775
    758950 8y0u:P0 (3.59) BS01 rna ? GO:0000027 ... P05317 38698775
    758951 8y0u:P2 (3.59) BS01 rna ? GO:0000027 ... P0CX53 38698775
    758952 8y0u:SA (3.59) BS01 rna ? GO:0000028 ... P32905 38698775
    758953 8y0u:SB (3.59) BS01 rna ? GO:0000462 ... P33442 38698775
    758954 8y0u:SB (3.59) BS02 rna ? GO:0000462 ... P33442 38698775
    758955 8y0u:SC (3.59) BS01 rna ? GO:0000054 ... P25443 38698775
    758956 8y0u:SE (3.59) BS01 rna ? GO:0002181 ... P0CX35 38698775
    758957 8y0u:SE (3.59) BS02 MG ? GO:0002181 ... P0CX35 38698775
    758958 8y0u:SG (3.59) BS01 rna ? GO:0000462 ... P0CX37 38698775
    758959 8y0u:SH (3.59) BS01 rna ? GO:0002181 ... P26786 38698775
    758960 8y0u:SI (3.59) BS01 rna ? GO:0000462 ... P0CX39 38698775
    758961 8y0u:SI (3.59) BS02 rna ? GO:0000462 ... P0CX39 38698775
    758962 8y0u:SJ (3.59) BS01 rna ? GO:0000462 ... O13516 38698775
    758963 8y0u:SL (3.59) BS01 rna ? GO:0000028 ... P0CX47 38698775
    758964 8y0u:SN (3.59) BS01 rna ? GO:0000462 ... P05756 38698775
    758965 8y0u:SN (3.59) BS02 rna ? GO:0000462 ... P05756 38698775
    758966 8y0u:SO (3.59) BS01 rna ? GO:0000028 ... P39516 38698775
    758967 8y0u:SP (3.59) BS01 rna ? GO:0000028 ... Q01855 38698775
    758968 8y0u:SQ (3.59) BS01 rna ? GO:0000462 ... P0CX51 38698775
    758969 8y0u:SQ (3.59) BS02 MG ? GO:0000462 ... P0CX51 38698775
    758970 8y0u:ST (3.59) BS01 rna ? GO:0000028 ... P07280 38698775
    758971 8y0u:ST (3.59) BS02 MG ? GO:0000028 ... P07280 38698775
    758972 8y0u:ST (3.59) BS03 MG ? GO:0000028 ... P07280 38698775
    758973 8y0u:SU (3.59) BS01 rna ? GO:0000462 ... P38701 38698775
    758974 8y0u:SW (3.59) BS01 rna ? GO:0002181 ... P0C0W1 38698775
    758975 8y0u:SX (3.59) BS01 rna ? GO:0000462 ... P0CX29 38698775
    758976 8y0u:SY (3.59) BS01 rna ? GO:0000462 ... P0CX31 38698775
    758977 8y0u:SZ (3.59) BS01 rna ? GO:0002181 ... Q3E792 38698775
    758978 8y0u:Sa (3.59) BS01 rna ? GO:0000054 ... P39939 38698775
    758979 8y0u:Sb (3.59) BS01 rna ? GO:0000028 ... P35997 38698775
    758980 8y0u:Sc (3.59) BS01 rna ? GO:0000028 ... Q3E7X9 38698775
    758981 8y0u:Sd (3.59) BS01 rna ? GO:0002181 ... P41057 38698775
    758982 8y0u:Sd (3.59) BS02 MG ? GO:0002181 ... P41057 38698775
    758983 8y0u:Sd (3.59) BS03 ZN ? GO:0002181 ... P41057 38698775
    758984 8y0u:Se (3.59) BS01 rna ? GO:0002181 ... P0CX33 38698775
    758985 8y0u:Sf (3.59) BS01 rna ? GO:0000028 ... P05759 38698775
    758986 8y0u:Sf (3.59) BS02 ZN ? GO:0000028 ... P05759 38698775
    758987 8y0u:s (3.59) BS01 rna ? GO:0000723 ... P39015 38698775
    758988 8y0w:5 (3.4) BS01 rna ? GO:0003723 ... P63241 38698775
    758989 8y0w:CB (3.4) BS01 rna 3.6.5.- GO:0002244 ... P13639 38698775
    758990 8y0w:CB (3.4) BS02 rna 3.6.5.- GO:0002244 ... P13639 38698775
    758991 8y0w:LA (3.4) BS01 rna ? GO:0002181 ... P62917 38698775
    758992 8y0w:LA (3.4) BS02 MG ? GO:0002181 ... P62917 38698775
    758993 8y0w:LB (3.4) BS01 rna ? GO:0002181 ... P39023 38698775
    758994 8y0w:LC (3.4) BS01 rna ? GO:0002181 ... P36578 38698775
    758995 8y0w:LC (3.4) BS02 rna ? GO:0002181 ... P36578 38698775
    758996 8y0w:LD (3.4) BS01 rna ? GO:0000027 ... P46777 38698775
    758997 8y0w:LD (3.4) BS02 rna ? GO:0000027 ... P46777 38698775
    758998 8y0w:LE (3.4) BS01 rna ? GO:0000027 ... Q02878 38698775
    758999 8y0w:LF (3.4) BS01 rna ? GO:0000463 ... P18124 38698775
    759000 8y0w:LF (3.4) BS02 rna ? GO:0000463 ... P18124 38698775
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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