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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    758601 8xt2:SQ (3.3) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    758602 8xt2:SR (3.3) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    758603 8xt2:SS (3.3) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    758604 8xt2:SS (3.3) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    758605 8xt2:ST (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    758606 8xt2:ST (3.3) BS02 ZN N/A GO:0003735 ... Q9Y3D5 38942792
    758607 8xt2:SW (3.3) BS01 rna N/A GO:0003723 ... P82921 38942792
    758608 8xt2:SY (3.3) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    758609 8xt2:SZ (3.3) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    758610 8xt2:Sa (3.3) BS01 rna N/A GO:0003735 ... P82663 38942792
    758611 8xt2:Sa (3.3) BS02 ZN N/A GO:0003735 ... P82663 38942792
    758612 8xt2:Sb (3.3) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    758613 8xt2:Sc (3.3) BS01 rna N/A GO:0000049 ... Q92552 38942792
    758614 8xt2:Se (3.3) BS01 rna N/A GO:0003723 ... P51398 38942792
    758615 8xt2:Se (3.3) BS02 GDP N/A GO:0003723 ... P51398 38942792
    758616 8xt2:Sf (3.3) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    758617 8xt2:Si (3.3) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    758618 8xt2:Sj (3.3) BS01 rna N/A GO:0003735 ... P82930 38942792
    758619 8xt2:Sk (3.3) BS01 rna N/A GO:0003723 ... P82673 38942792
    758620 8xt2:Sm (3.3) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    758621 8xt2:Sn (3.3) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    758622 8xt2:Sn (3.3) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    758623 8xt3:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    758624 8xt3:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    758625 8xt3:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    758626 8xt3:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    758627 8xt3:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    758628 8xt3:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    758629 8xt3:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    758630 8xt3:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    758631 8xt3:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    758632 8xt3:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    758633 8xt3:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    758634 8xt3:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    758635 8xt3:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    758636 8xt3:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    758637 8xt3:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    758638 8xt3:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    758639 8xt3:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    758640 8xt3:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    758641 8xt3:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    758642 8xt3:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    758643 8xt3:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    758644 8xt3:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    758645 8xt3:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    758646 8xt3:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    758647 8xt3:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    758648 8xt3:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    758649 8xt3:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    758650 8xt3:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    758651 8xt3:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    758652 8xt3:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    758653 8xt3:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    758654 8xt3:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    758655 8xt3:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    758656 8xt3:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    758657 8xt3:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    758658 8xt3:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    758659 8xt3:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    758660 8xt3:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    758661 8xt3:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    758662 8xt3:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    758663 8xt3:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    758664 8xus:B (3.18) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    758665 8xuu:A (3.69) BS01 IDU N/A GO:0005515 ... P0DTC2 39071099
    758666 8xv2:A (3.7) BS01 VIB ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    758667 8xv5:A (3.7) BS01 PXM ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    758668 8xv9:A (3.8) BS01 2TA ? GO:0005506 ... P0ABE7
    Q9BZV2    		 38503960
    758669 8xvf:A (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    758670 8xvf:B (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    758671 8xvf:C (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    758672 8xvf:D (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    758673 8xvf:E (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    758674 8xvf:F (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    758675 8xvf:G (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    758676 8xvf:H (2.76) BS01 CA ? GO:0005509 ... A0A0V1BA72 N/A
    758677 8xvg:A (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    758678 8xvg:B (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    758679 8xvg:B (9.4) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    758680 8xvg:C (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    758681 8xvg:D (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    758682 8xvg:E (9.4) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    758683 8xvg:F (9.4) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    758684 8xvg:I (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    758685 8xvg:J (9.4) BS01 ADP N/A GO:0000723 ... O96019 39154037
    758686 8xvg:L (9.4) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    758687 8xvt:A (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    758688 8xvt:B (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    758689 8xvt:B (3.2) BS02 ADP N/A GO:0000492 ... Q9Y230 39154037
    758690 8xvt:C (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    758691 8xvt:D (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    758692 8xvt:E (3.2) BS01 ADP N/A GO:0000492 ... Q9Y265 39154037
    758693 8xvt:F (3.2) BS01 ADP N/A GO:0000492 ... Q9Y230 39154037
    758694 8xvt:I (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    758695 8xvt:J (3.2) BS01 ADP N/A GO:0000723 ... O96019 39154037
    758696 8xvt:K (3.2) BS01 ADP N/A GO:0000079 ... P60709 39154037
    758697 8xvv:L (3.2) BS01 IHP N/A GO:0000124 ... Q9Y4A5 39154037
    758698 8xw0:A (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    758699 8xw0:A (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    758700 8xw0:B (3.11) BS01 P5S ? GO:0000325 ... Q9C8G5 38570680
    758701 8xw0:B (3.11) BS02 P5S ? GO:0000325 ... Q9C8G5 38570680
    758702 8xw6:A (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758703 8xw6:A (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758704 8xw6:A (1.99) BS03 ATP N/A GO:0004743 ... Q8DQ84 39009072
    758705 8xw6:A (1.99) BS04 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758706 8xw6:B (1.99) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758707 8xw6:B (1.99) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758708 8xw6:B (1.99) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758709 8xw7:A (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758710 8xw7:A (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758711 8xw7:A (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758712 8xw7:A (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    758713 8xw7:B (2.1) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758714 8xw7:B (2.1) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758715 8xw7:B (2.1) BS03 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758716 8xw7:B (2.1) BS04 ADP N/A GO:0004743 ... Q8DQ84 39009072
    758717 8xw8:A (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758718 8xw8:A (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758719 8xw8:A (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    758720 8xw8:A (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758721 8xw8:B (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758722 8xw8:B (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758723 8xw8:B (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    758724 8xw8:B (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758725 8xw8:C (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758726 8xw8:C (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758727 8xw8:C (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    758728 8xw8:C (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758729 8xw8:D (2.0) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758730 8xw8:D (2.0) BS02 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758731 8xw8:D (2.0) BS03 GDP N/A GO:0004743 ... Q8DQ84 39009072
    758732 8xw8:D (2.0) BS04 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758733 8xw9:A (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758734 8xw9:A (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758735 8xw9:A (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758736 8xw9:A (1.75) BS04 UDP N/A GO:0004743 ... Q8DQ84 39009072
    758737 8xw9:B (1.75) BS01 MG N/A GO:0004743 ... Q8DQ84 39009072
    758738 8xw9:B (1.75) BS02 OXL N/A GO:0004743 ... Q8DQ84 39009072
    758739 8xw9:B (1.75) BS03 FBP N/A GO:0004743 ... Q8DQ84 39009072
    758740 8xxl:CD (2.9) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    758741 8xxl:SA (2.9) BS01 rna ? GO:0000028 ... P08865 38641729
    758742 8xxl:SB (2.9) BS01 rna ? GO:0002181 ... P61247 38641729
    758743 8xxl:SC (2.9) BS01 rna ? GO:0002181 ... P15880 38641729
    758744 8xxl:SD (2.9) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    758745 8xxl:SE (2.9) BS01 rna ? GO:0002181 ... P62701 38641729
    758746 8xxl:SF (2.9) BS01 rna ? GO:0000028 ... P46782 38641729
    758747 8xxl:SG (2.9) BS01 rna ? GO:0000082 ... P62753 38641729
    758748 8xxl:SH (2.9) BS01 rna ? GO:0001843 ... P62081 38641729
    758749 8xxl:SI (2.9) BS01 rna ? GO:0000462 ... P62241 38641729
    758750 8xxl:SJ (2.9) BS01 rna ? GO:0002181 ... P46781 38641729
    758751 8xxl:SK (2.9) BS01 rna ? GO:0002181 ... P46783 38641729
    758752 8xxl:SL (2.9) BS01 rna ? GO:0002181 ... P62280 38641729
    758753 8xxl:SM (2.9) BS01 rna ? GO:0002181 ... P25398 38641729
    758754 8xxl:SN (2.9) BS01 rna ? GO:0002181 ... P62277 38641729
    758755 8xxl:SO (2.9) BS01 rna ? GO:0000028 ... P62263 38641729
    758756 8xxl:SP (2.9) BS01 rna ? GO:0000028 ... P62841 38641729
    758757 8xxl:SQ (2.9) BS01 rna ? GO:0000462 ... P62249 38641729
    758758 8xxl:SR (2.9) BS01 rna ? GO:0002181 ... P08708 38641729
    758759 8xxl:SS (2.9) BS01 rna ? GO:0002181 ... P62269 38641729
    758760 8xxl:ST (2.9) BS01 rna ? GO:0000028 ... P39019 38641729
    758761 8xxl:SU (2.9) BS01 rna ? GO:0002181 ... P60866 38641729
    758762 8xxl:SW (2.9) BS01 rna ? GO:0002181 ... P62244 38641729
    758763 8xxl:SX (2.9) BS01 rna ? GO:0002181 ... P62266 38641729
    758764 8xxl:SY (2.9) BS01 rna ? GO:0002181 ... P62847 38641729
    758765 8xxl:SZ (2.9) BS01 rna ? GO:0002181 ... P62851 38641729
    758766 8xxl:Sa (2.9) BS01 rna ? GO:0002181 ... P62854 38641729
    758767 8xxl:Sa (2.9) BS02 ZN ? GO:0002181 ... P62854 38641729
    758768 8xxl:Sb (2.9) BS01 rna ? GO:0000028 ... P42677 38641729
    758769 8xxl:Sc (2.9) BS01 rna ? GO:0000028 ... P62857 38641729
    758770 8xxl:Sd (2.9) BS01 rna ? GO:0002181 ... P62273 38641729
    758771 8xxl:Sd (2.9) BS02 ZN ? GO:0002181 ... P62273 38641729
    758772 8xxl:Se (2.9) BS01 rna ? GO:0003735 ... P62861 38641729
    758773 8xxl:Sf (2.9) BS01 rna ? GO:0002181 ... P62979 38641729
    758774 8xxl:Sg (2.9) BS01 rna ? GO:0001891 ... P63244 38641729
    758775 8xxm:3G (3.2) BS01 rna ? GO:0001732 ... O75821 38641729
    758776 8xxm:CD (3.2) BS01 rna ? GO:0003723 ... Q53EL6 38641729
    758777 8xxm:SA (3.2) BS01 rna ? GO:0000028 ... P08865 38641729
    758778 8xxm:SB (3.2) BS01 rna ? GO:0002181 ... P61247 38641729
    758779 8xxm:SC (3.2) BS01 rna ? GO:0002181 ... P15880 38641729
    758780 8xxm:SD (3.2) BS01 rna 4.2.99.18 GO:0000977 ... P23396 38641729
    758781 8xxm:SE (3.2) BS01 rna ? GO:0002181 ... P62701 38641729
    758782 8xxm:SF (3.2) BS01 rna ? GO:0000028 ... P46782 38641729
    758783 8xxm:SG (3.2) BS01 rna ? GO:0000082 ... P62753 38641729
    758784 8xxm:SH (3.2) BS01 rna ? GO:0001843 ... P62081 38641729
    758785 8xxm:SI (3.2) BS01 rna ? GO:0000462 ... P62241 38641729
    758786 8xxm:SJ (3.2) BS01 rna ? GO:0002181 ... P46781 38641729
    758787 8xxm:SK (3.2) BS01 rna ? GO:0002181 ... P46783 38641729
    758788 8xxm:SL (3.2) BS01 rna ? GO:0002181 ... P62280 38641729
    758789 8xxm:SM (3.2) BS01 rna ? GO:0002181 ... P25398 38641729
    758790 8xxm:SN (3.2) BS01 rna ? GO:0002181 ... P62277 38641729
    758791 8xxm:SO (3.2) BS01 rna ? GO:0000028 ... P62263 38641729
    758792 8xxm:SP (3.2) BS01 rna ? GO:0000028 ... P62841 38641729
    758793 8xxm:SQ (3.2) BS01 rna ? GO:0000462 ... P62249 38641729
    758794 8xxm:SR (3.2) BS01 rna ? GO:0002181 ... P08708 38641729
    758795 8xxm:SS (3.2) BS01 rna ? GO:0002181 ... P62269 38641729
    758796 8xxm:ST (3.2) BS01 rna ? GO:0000028 ... P39019 38641729
    758797 8xxm:SU (3.2) BS01 rna ? GO:0002181 ... P60866 38641729
    758798 8xxm:SW (3.2) BS01 rna ? GO:0002181 ... P62244 38641729
    758799 8xxm:SX (3.2) BS01 rna ? GO:0002181 ... P62266 38641729
    758800 8xxm:SY (3.2) BS01 rna ? GO:0002181 ... P62847 38641729
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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