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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    758401 8xsz:SE (3.2) BS01 rna N/A GO:0002181 ... P62701 38942792
    758402 8xsz:SF (3.2) BS01 rna N/A GO:0000028 ... P46782 38942792
    758403 8xsz:SG (3.2) BS01 rna N/A GO:0000082 ... P62753 38942792
    758404 8xsz:SH (3.2) BS01 rna N/A GO:0001843 ... P62081 38942792
    758405 8xsz:SI (3.2) BS01 rna N/A GO:0000462 ... P62241 38942792
    758406 8xsz:SI (3.2) BS02 MG N/A GO:0000462 ... P62241 38942792
    758407 8xsz:SI (3.2) BS03 MG N/A GO:0000462 ... P62241 38942792
    758408 8xsz:SJ (3.2) BS01 rna N/A GO:0002181 ... P46781 38942792
    758409 8xsz:SK (3.2) BS01 rna N/A GO:0002181 ... P46783 38942792
    758410 8xsz:SL (3.2) BS01 rna N/A GO:0002181 ... P62280 38942792
    758411 8xsz:SM (3.2) BS01 rna N/A GO:0002181 ... P25398 38942792
    758412 8xsz:SM (3.2) BS02 ZN N/A GO:0002181 ... P25398 38942792
    758413 8xsz:SN (3.2) BS01 rna N/A GO:0002181 ... P62277 38942792
    758414 8xsz:SN (3.2) BS02 rna N/A GO:0002181 ... P62277 38942792
    758415 8xsz:SO (3.2) BS01 rna N/A GO:0000028 ... P62263 38942792
    758416 8xsz:SP (3.2) BS01 rna N/A GO:0000028 ... P62841 38942792
    758417 8xsz:SP (3.2) BS02 rna N/A GO:0000028 ... P62841 38942792
    758418 8xsz:SQ (3.2) BS01 rna N/A GO:0000462 ... P62249 38942792
    758419 8xsz:SR (3.2) BS01 rna N/A GO:0002181 ... P08708 38942792
    758420 8xsz:SS (3.2) BS01 rna N/A GO:0002181 ... P62269 38942792
    758421 8xsz:ST (3.2) BS01 rna N/A GO:0000028 ... P39019 38942792
    758422 8xsz:SU (3.2) BS01 rna N/A GO:0002181 ... P60866 38942792
    758423 8xsz:SW (3.2) BS01 rna N/A GO:0002181 ... P62244 38942792
    758424 8xsz:SX (3.2) BS01 rna N/A GO:0002181 ... P62266 38942792
    758425 8xsz:SY (3.2) BS01 rna N/A GO:0002181 ... P62847 38942792
    758426 8xsz:SZ (3.2) BS01 rna N/A GO:0002181 ... P62851 38942792
    758427 8xsz:Sa (3.2) BS01 rna N/A GO:0002181 ... P62854 38942792
    758428 8xsz:Sb (3.2) BS01 rna N/A GO:0000028 ... P42677 38942792
    758429 8xsz:Sc (3.2) BS01 rna N/A GO:0000028 ... P62857 38942792
    758430 8xsz:Sd (3.2) BS01 rna N/A GO:0002181 ... P62273 38942792
    758431 8xsz:Sf (3.2) BS01 rna N/A GO:0002181 ... P62979 38942792
    758432 8xsz:Sg (3.2) BS01 rna N/A GO:0001891 ... P63244 38942792
    758433 8xt0:L3 (3.2) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    758434 8xt0:L4 (3.2) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    758435 8xt0:L6 (3.2) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    758436 8xt0:L8 (3.2) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    758437 8xt0:LB (3.2) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    758438 8xt0:LB (3.2) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    758439 8xt0:LC (3.2) BS01 rna N/A GO:0003723 ... P09001 38942792
    758440 8xt0:LD (3.2) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    758441 8xt0:LI (3.2) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    758442 8xt0:LJ (3.2) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    758443 8xt0:LK (3.2) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    758444 8xt0:LM (3.2) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    758445 8xt0:LN (3.2) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    758446 8xt0:LO (3.2) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    758447 8xt0:LP (3.2) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    758448 8xt0:LQ (3.2) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    758449 8xt0:LS (3.2) BS01 rna N/A GO:0003735 ... P49406 38942792
    758450 8xt0:LT (3.2) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    758451 8xt0:LU (3.2) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    758452 8xt0:LW (3.2) BS01 rna N/A GO:0001650 ... Q16540 38942792
    758453 8xt0:La (3.2) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    758454 8xt0:Lb (3.2) BS01 rna N/A GO:0003723 ... Q13084 38942792
    758455 8xt0:Lf (3.2) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    758456 8xt0:Lf (3.2) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    758457 8xt0:Lh (3.2) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    758458 8xt0:Li (3.2) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    758459 8xt0:Lj (3.2) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    758460 8xt0:Lj (3.2) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    758461 8xt0:Lk (3.2) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    758462 8xt0:Ll (3.2) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    758463 8xt0:Ll (3.2) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    758464 8xt0:Ln (3.2) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    758465 8xt0:Lo (3.2) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    758466 8xt0:Lp (3.2) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    758467 8xt0:Lq (3.2) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    758468 8xt0:Lr (3.2) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    758469 8xt0:Lu (3.2) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    758470 8xt0:Lv (3.2) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    758471 8xt0:Lv (3.2) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    758472 8xt0:Lw (3.2) BS01 rna N/A GO:0003735 ... Q13405 38942792
    758473 8xt0:Ly (3.2) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    758474 8xt0:SB (3.2) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    758475 8xt0:SB (3.2) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    758476 8xt0:SE (3.2) BS01 rna N/A GO:0003723 ... P82675 38942792
    758477 8xt0:SF (3.2) BS01 rna N/A GO:0003735 ... P82932 38942792
    758478 8xt0:SG (3.2) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    758479 8xt0:SI (3.2) BS01 rna N/A GO:0003723 ... P82933 38942792
    758480 8xt0:SJ (3.2) BS01 rna N/A GO:0003674 ... P82664 38942792
    758481 8xt0:SK (3.2) BS01 rna N/A GO:0003723 ... P82912 38942792
    758482 8xt0:SL (3.2) BS01 rna N/A GO:0003723 ... O15235 38942792
    758483 8xt0:SN (3.2) BS01 rna N/A GO:0003723 ... O60783 38942792
    758484 8xt0:SO (3.2) BS01 rna N/A GO:0003723 ... P82914 38942792
    758485 8xt0:SP (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    758486 8xt0:SQ (3.2) BS01 rna N/A GO:0003735 ... Q9Y2R5 38942792
    758487 8xt0:SR (3.2) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    758488 8xt0:SS (3.2) BS01 rna N/A GO:0003735 ... Q9Y676 38942792
    758489 8xt0:SS (3.2) BS02 ZN N/A GO:0003735 ... Q9Y676 38942792
    758490 8xt0:ST (3.2) BS01 rna N/A GO:0003735 ... Q9Y3D5 38942792
    758491 8xt0:SW (3.2) BS01 rna N/A GO:0003723 ... P82921 38942792
    758492 8xt0:SY (3.2) BS01 rna N/A GO:0003723 ... Q9Y3D9 38942792
    758493 8xt0:SZ (3.2) BS01 rna N/A GO:0003723 ... Q96EL2 38942792
    758494 8xt0:Sa (3.2) BS01 rna N/A GO:0003735 ... P82663 38942792
    758495 8xt0:Sa (3.2) BS02 ZN N/A GO:0003735 ... P82663 38942792
    758496 8xt0:Sb (3.2) BS01 rna N/A GO:0003723 ... Q9BYN8 38942792
    758497 8xt0:Sc (3.2) BS01 rna N/A GO:0000049 ... Q92552 38942792
    758498 8xt0:Se (3.2) BS01 rna N/A GO:0003723 ... P51398 38942792
    758499 8xt0:Se (3.2) BS02 GDP N/A GO:0003723 ... P51398 38942792
    758500 8xt0:Sf (3.2) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    758501 8xt0:Si (3.2) BS01 rna N/A GO:0003735 ... Q9Y291 38942792
    758502 8xt0:Sj (3.2) BS01 rna N/A GO:0003735 ... P82930 38942792
    758503 8xt0:Sk (3.2) BS01 rna N/A GO:0003723 ... P82673 38942792
    758504 8xt0:Sm (3.2) BS01 rna N/A GO:0001650 ... Q96BP2 38942792
    758505 8xt0:Sn (3.2) BS01 rna N/A GO:0005515 ... Q9NWT8 38942792
    758506 8xt0:Sn (3.2) BS02 rna N/A GO:0005515 ... Q9NWT8 38942792
    758507 8xt1:L3 (3.1) BS01 rna N/A GO:0005515 ... Q96EL3 38942792
    758508 8xt1:L4 (3.1) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    758509 8xt1:L6 (3.1) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    758510 8xt1:L8 (3.1) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    758511 8xt1:LB (3.1) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    758512 8xt1:LC (3.1) BS01 rna N/A GO:0003723 ... P09001 38942792
    758513 8xt1:LD (3.1) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    758514 8xt1:LI (3.1) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    758515 8xt1:LJ (3.1) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    758516 8xt1:LK (3.1) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    758517 8xt1:LM (3.1) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    758518 8xt1:LN (3.1) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    758519 8xt1:LO (3.1) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    758520 8xt1:LP (3.1) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    758521 8xt1:LQ (3.1) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    758522 8xt1:LS (3.1) BS01 rna N/A GO:0003735 ... P49406 38942792
    758523 8xt1:LT (3.1) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    758524 8xt1:LU (3.1) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    758525 8xt1:LW (3.1) BS01 rna N/A GO:0001650 ... Q16540 38942792
    758526 8xt1:La (3.1) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    758527 8xt1:Lb (3.1) BS01 rna N/A GO:0003723 ... Q13084 38942792
    758528 8xt1:Lf (3.1) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    758529 8xt1:Lf (3.1) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    758530 8xt1:Lh (3.1) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    758531 8xt1:Li (3.1) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    758532 8xt1:Lj (3.1) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    758533 8xt1:Lj (3.1) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    758534 8xt1:Lk (3.1) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    758535 8xt1:Ll (3.1) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    758536 8xt1:Ll (3.1) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    758537 8xt1:Ln (3.1) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    758538 8xt1:Lo (3.1) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    758539 8xt1:Lp (3.1) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    758540 8xt1:Lq (3.1) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    758541 8xt1:Lr (3.1) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    758542 8xt1:Lu (3.1) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    758543 8xt1:Lv (3.1) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    758544 8xt1:Lv (3.1) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    758545 8xt1:Lw (3.1) BS01 rna N/A GO:0003735 ... Q13405 38942792
    758546 8xt1:Ly (3.1) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    758547 8xt1:SR (3.1) BS01 rna N/A GO:0003735 ... Q9NVS2 38942792
    758548 8xt1:Sf (3.1) BS01 rna N/A GO:0003723 ... Q9NP92 38942792
    758549 8xt2:L4 (3.3) BS01 rna N/A GO:0003723 ... Q6P161 38942792
    758550 8xt2:L6 (3.3) BS01 rna N/A GO:0003735 ... Q9BQC6 38942792
    758551 8xt2:L8 (3.3) BS01 rna N/A GO:0005515 ... Q8TAE8 38942792
    758552 8xt2:LB (3.3) BS01 rna N/A GO:0003723 ... Q5T653 38942792
    758553 8xt2:LB (3.3) BS02 MG N/A GO:0003723 ... Q5T653 38942792
    758554 8xt2:LC (3.3) BS01 rna N/A GO:0003723 ... P09001 38942792
    758555 8xt2:LD (3.3) BS01 rna N/A GO:0003723 ... Q9BYD3 38942792
    758556 8xt2:LI (3.3) BS01 rna N/A GO:0003723 ... Q9BYD2 38942792
    758557 8xt2:LJ (3.3) BS01 rna N/A GO:0003723 ... Q7Z7H8 38942792
    758558 8xt2:LK (3.3) BS01 rna N/A GO:0003723 ... Q9Y3B7 38942792
    758559 8xt2:LM (3.3) BS01 rna N/A GO:0003723 ... Q9BYD1 38942792
    758560 8xt2:LN (3.3) BS01 rna N/A GO:0003723 ... Q6P1L8 38942792
    758561 8xt2:LO (3.3) BS01 rna N/A GO:0003723 ... Q9P015 38942792
    758562 8xt2:LP (3.3) BS01 rna N/A GO:0003735 ... Q9NX20 38942792
    758563 8xt2:LQ (3.3) BS01 rna N/A GO:0003735 ... Q9NRX2 38942792
    758564 8xt2:LS (3.3) BS01 rna N/A GO:0003735 ... P49406 38942792
    758565 8xt2:LT (3.3) BS01 rna N/A GO:0003723 ... Q9BYC9 38942792
    758566 8xt2:LU (3.3) BS01 rna N/A GO:0003723 ... Q7Z2W9 38942792
    758567 8xt2:LW (3.3) BS01 rna N/A GO:0001650 ... Q16540 38942792
    758568 8xt2:La (3.3) BS01 rna N/A GO:0003723 ... Q9P0M9 38942792
    758569 8xt2:Lb (3.3) BS01 rna N/A GO:0003723 ... Q13084 38942792
    758570 8xt2:Lf (3.3) BS01 rna N/A GO:0003723 ... Q9BYC8 38942792
    758571 8xt2:Lf (3.3) BS02 ZN N/A GO:0003723 ... Q9BYC8 38942792
    758572 8xt2:Lh (3.3) BS01 rna N/A GO:0003735 ... Q9BQ48 38942792
    758573 8xt2:Li (3.3) BS01 rna N/A GO:0003735 ... Q9NZE8 38942792
    758574 8xt2:Lj (3.3) BS01 rna N/A GO:0005515 ... Q9P0J6 38942792
    758575 8xt2:Lj (3.3) BS02 ZN N/A GO:0005515 ... Q9P0J6 38942792
    758576 8xt2:Lk (3.3) BS01 rna N/A GO:0003723 ... Q9BZE1 38942792
    758577 8xt2:Ll (3.3) BS01 rna N/A GO:0005515 ... Q96DV4 38942792
    758578 8xt2:Ll (3.3) BS02 rna N/A GO:0005515 ... Q96DV4 38942792
    758579 8xt2:Ln (3.3) BS01 rna N/A GO:0003723 ... Q9NQ50 38942792
    758580 8xt2:Lo (3.3) BS01 rna N/A GO:0003723 ... Q8IXM3 38942792
    758581 8xt2:Lp (3.3) BS01 rna N/A GO:0003723 ... Q9Y6G3 38942792
    758582 8xt2:Lq (3.3) BS01 rna N/A GO:0003723 ... Q8N983 38942792
    758583 8xt2:Lr (3.3) BS01 rna N/A GO:0003723 ... Q9H9J2 38942792
    758584 8xt2:Lu (3.3) BS01 rna N/A GO:0003674 ... Q9HD33 38942792
    758585 8xt2:Lv (3.3) BS01 rna N/A GO:0005515 ... Q96GC5 38942792
    758586 8xt2:Lv (3.3) BS02 rna N/A GO:0005515 ... Q96GC5 38942792
    758587 8xt2:Lw (3.3) BS01 rna N/A GO:0003735 ... Q13405 38942792
    758588 8xt2:Ly (3.3) BS01 rna N/A GO:0003735 ... Q4U2R6 38942792
    758589 8xt2:SB (3.3) BS01 rna N/A GO:0003735 ... Q9Y399 38942792
    758590 8xt2:SB (3.3) BS02 ZN N/A GO:0003735 ... Q9Y399 38942792
    758591 8xt2:SE (3.3) BS01 rna N/A GO:0003723 ... P82675 38942792
    758592 8xt2:SF (3.3) BS01 rna N/A GO:0003735 ... P82932 38942792
    758593 8xt2:SG (3.3) BS01 rna N/A GO:0000028 ... Q9Y2R9 38942792
    758594 8xt2:SI (3.3) BS01 rna N/A GO:0003723 ... P82933 38942792
    758595 8xt2:SJ (3.3) BS01 rna N/A GO:0003674 ... P82664 38942792
    758596 8xt2:SK (3.3) BS01 rna N/A GO:0003723 ... P82912 38942792
    758597 8xt2:SL (3.3) BS01 rna N/A GO:0003723 ... O15235 38942792
    758598 8xt2:SN (3.3) BS01 rna N/A GO:0003723 ... O60783 38942792
    758599 8xt2:SO (3.3) BS01 rna N/A GO:0003723 ... P82914 38942792
    758600 8xt2:SP (3.3) BS01 rna N/A GO:0003735 ... Q9Y3D3 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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