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●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    758201 8xsx:SY (2.4) BS01 rna N/A GO:0002181 ... P62847 38942792
    758202 8xsx:SZ (2.4) BS01 rna N/A GO:0002181 ... P62851 38942792
    758203 8xsx:Sa (2.4) BS01 rna N/A GO:0002181 ... P62854 38942792
    758204 8xsx:Sa (2.4) BS02 ZN N/A GO:0002181 ... P62854 38942792
    758205 8xsx:Sb (2.4) BS01 rna N/A GO:0000028 ... P42677 38942792
    758206 8xsx:Sc (2.4) BS01 rna N/A GO:0000028 ... P62857 38942792
    758207 8xsx:Sd (2.4) BS01 rna N/A GO:0002181 ... P62273 38942792
    758208 8xsx:Sf (2.4) BS01 rna N/A GO:0002181 ... P62979 38942792
    758209 8xsx:Sg (2.4) BS01 rna N/A GO:0001891 ... P63244 38942792
    758210 8xsy:CA (3.0) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    758211 8xsy:CE (3.0) BS01 rna N/A GO:0003713 ... Q96CT7 38942792
    758212 8xsy:LA (3.0) BS01 rna N/A GO:0002181 ... P62917 38942792
    758213 8xsy:LA (3.0) BS02 rna N/A GO:0002181 ... P62917 38942792
    758214 8xsy:LA (3.0) BS03 MG N/A GO:0002181 ... P62917 38942792
    758215 8xsy:LB (3.0) BS01 rna N/A GO:0002181 ... P39023 38942792
    758216 8xsy:LC (3.0) BS01 rna N/A GO:0002181 ... P36578 38942792
    758217 8xsy:LC (3.0) BS02 rna N/A GO:0002181 ... P36578 38942792
    758218 8xsy:LD (3.0) BS01 rna N/A GO:0000027 ... P46777 38942792
    758219 8xsy:LD (3.0) BS02 rna N/A GO:0000027 ... P46777 38942792
    758220 8xsy:LE (3.0) BS01 rna N/A GO:0000027 ... Q02878 38942792
    758221 8xsy:LF (3.0) BS01 rna N/A GO:0000463 ... P18124 38942792
    758222 8xsy:LF (3.0) BS02 rna N/A GO:0000463 ... P18124 38942792
    758223 8xsy:LG (3.0) BS01 rna N/A GO:0000470 ... P62424 38942792
    758224 8xsy:LG (3.0) BS02 rna N/A GO:0000470 ... P62424 38942792
    758225 8xsy:LH (3.0) BS01 rna N/A GO:0002181 ... P32969 38942792
    758226 8xsy:LI (3.0) BS01 rna N/A GO:0000027 ... P27635 38942792
    758227 8xsy:LI (3.0) BS02 rna N/A GO:0000027 ... P27635 38942792
    758228 8xsy:LJ (3.0) BS01 rna N/A GO:0000027 ... P62913 38942792
    758229 8xsy:LJ (3.0) BS02 rna N/A GO:0000027 ... P62913 38942792
    758230 8xsy:LL (3.0) BS01 rna N/A GO:0001824 ... P26373 38942792
    758231 8xsy:LL (3.0) BS02 rna N/A GO:0001824 ... P26373 38942792
    758232 8xsy:LM (3.0) BS01 rna N/A GO:0002181 ... P50914 38942792
    758233 8xsy:LN (3.0) BS01 rna N/A GO:0002181 ... P61313 38942792
    758234 8xsy:LN (3.0) BS02 rna N/A GO:0002181 ... P61313 38942792
    758235 8xsy:LO (3.0) BS01 rna N/A GO:0002181 ... P40429 38942792
    758236 8xsy:LP (3.0) BS01 rna N/A GO:0002181 ... P18621 38942792
    758237 8xsy:LP (3.0) BS02 rna N/A GO:0002181 ... P18621 38942792
    758238 8xsy:LQ (3.0) BS01 rna N/A GO:0002181 ... Q07020 38942792
    758239 8xsy:LR (3.0) BS01 rna N/A GO:0002181 ... P84098 38942792
    758240 8xsy:LR (3.0) BS02 rna N/A GO:0002181 ... P84098 38942792
    758241 8xsy:LS (3.0) BS01 rna N/A GO:0002181 ... Q02543 38942792
    758242 8xsy:LS (3.0) BS02 rna N/A GO:0002181 ... Q02543 38942792
    758243 8xsy:LT (3.0) BS01 rna N/A GO:0002181 ... P46778 38942792
    758244 8xsy:LT (3.0) BS02 rna N/A GO:0002181 ... P46778 38942792
    758245 8xsy:LU (3.0) BS01 rna N/A GO:0002181 ... P35268 38942792
    758246 8xsy:LV (3.0) BS01 rna N/A GO:0000122 ... P62829 38942792
    758247 8xsy:LW (3.0) BS01 rna N/A GO:0000027 ... P83731 38942792
    758248 8xsy:LW (3.0) BS02 rna N/A GO:0000027 ... P83731 38942792
    758249 8xsy:LX (3.0) BS01 rna N/A GO:0000027 ... P62750 38942792
    758250 8xsy:LX (3.0) BS02 rna N/A GO:0000027 ... P62750 38942792
    758251 8xsy:LY (3.0) BS01 rna N/A GO:0002181 ... P61254 38942792
    758252 8xsy:LY (3.0) BS02 rna N/A GO:0002181 ... P61254 38942792
    758253 8xsy:LZ (3.0) BS01 rna N/A GO:0002181 ... P61353 38942792
    758254 8xsy:La (3.0) BS01 rna N/A GO:0002181 ... P46776 38942792
    758255 8xsy:Lb (3.0) BS01 rna N/A GO:0002181 ... P47914 38942792
    758256 8xsy:Lc (3.0) BS01 rna N/A GO:0002181 ... P62888 38942792
    758257 8xsy:Lc (3.0) BS02 peptide N/A GO:0002181 ... P62888 38942792
    758258 8xsy:Ld (3.0) BS01 rna N/A GO:0002181 ... P62899 38942792
    758259 8xsy:Le (3.0) BS01 rna N/A GO:0002181 ... P62910 38942792
    758260 8xsy:Le (3.0) BS02 MG N/A GO:0002181 ... P62910 38942792
    758261 8xsy:Lf (3.0) BS01 rna N/A GO:0000049 ... P18077 38942792
    758262 8xsy:Lg (3.0) BS01 rna N/A GO:0002181 ... P49207 38942792
    758263 8xsy:Lg (3.0) BS02 peptide N/A GO:0002181 ... P49207 38942792
    758264 8xsy:Lg (3.0) BS03 MG N/A GO:0002181 ... P49207 38942792
    758265 8xsy:Lg (3.0) BS04 ZN N/A GO:0002181 ... P49207 38942792
    758266 8xsy:Lh (3.0) BS01 rna N/A GO:0000463 ... P42766 38942792
    758267 8xsy:Lh (3.0) BS02 rna N/A GO:0000463 ... P42766 38942792
    758268 8xsy:Li (3.0) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    758269 8xsy:Lj (3.0) BS01 rna N/A GO:0002181 ... P61927 38942792
    758270 8xsy:Lj (3.0) BS02 rna N/A GO:0002181 ... P61927 38942792
    758271 8xsy:Lj (3.0) BS03 ZN N/A GO:0002181 ... P61927 38942792
    758272 8xsy:Lk (3.0) BS01 rna N/A GO:0001501 ... P63173 38942792
    758273 8xsy:Ll (3.0) BS01 rna N/A GO:0002181 ... P62891 38942792
    758274 8xsy:Ll (3.0) BS02 rna N/A GO:0002181 ... P62891 38942792
    758275 8xsy:Lm (3.0) BS01 rna N/A GO:0002181 ... P62987 38942792
    758276 8xsy:Lm (3.0) BS02 ZN N/A GO:0002181 ... P62987 38942792
    758277 8xsy:Lo (3.0) BS01 rna N/A GO:0002181 ... P83881 38942792
    758278 8xsy:Lo (3.0) BS02 rna N/A GO:0002181 ... P83881 38942792
    758279 8xsy:Lo (3.0) BS03 ZN N/A GO:0002181 ... P83881 38942792
    758280 8xsy:Lp (3.0) BS01 rna N/A GO:0002181 ... P61513 38942792
    758281 8xsy:Lp (3.0) BS02 ZN N/A GO:0002181 ... P61513 38942792
    758282 8xsy:Lr (3.0) BS01 rna N/A GO:0002181 ... P46779 38942792
    758283 8xsy:Ls (3.0) BS01 rna N/A GO:0000027 ... P05388 38942792
    758284 8xsy:Lt (3.0) BS01 rna N/A GO:0002181 ... P30050 38942792
    758285 8xsy:SA (3.0) BS01 rna N/A GO:0000028 ... P08865 38942792
    758286 8xsy:SB (3.0) BS01 rna N/A GO:0002181 ... P61247 38942792
    758287 8xsy:SB (3.0) BS02 rna N/A GO:0002181 ... P61247 38942792
    758288 8xsy:SC (3.0) BS01 rna N/A GO:0002181 ... P15880 38942792
    758289 8xsy:SD (3.0) BS01 rna N/A GO:0000977 ... P23396 38942792
    758290 8xsy:SE (3.0) BS01 rna N/A GO:0002181 ... P62701 38942792
    758291 8xsy:SF (3.0) BS01 rna N/A GO:0000028 ... P46782 38942792
    758292 8xsy:SG (3.0) BS01 rna N/A GO:0000082 ... P62753 38942792
    758293 8xsy:SH (3.0) BS01 rna N/A GO:0001843 ... P62081 38942792
    758294 8xsy:SI (3.0) BS01 rna N/A GO:0000462 ... P62241 38942792
    758295 8xsy:SI (3.0) BS02 rna N/A GO:0000462 ... P62241 38942792
    758296 8xsy:SJ (3.0) BS01 rna N/A GO:0002181 ... P46781 38942792
    758297 8xsy:SK (3.0) BS01 rna N/A GO:0002181 ... P46783 38942792
    758298 8xsy:SL (3.0) BS01 rna N/A GO:0002181 ... P62280 38942792
    758299 8xsy:SM (3.0) BS01 rna N/A GO:0002181 ... P25398 38942792
    758300 8xsy:SM (3.0) BS02 ZN N/A GO:0002181 ... P25398 38942792
    758301 8xsy:SN (3.0) BS01 rna N/A GO:0002181 ... P62277 38942792
    758302 8xsy:SO (3.0) BS01 rna N/A GO:0000028 ... P62263 38942792
    758303 8xsy:SP (3.0) BS01 rna N/A GO:0000028 ... P62841 38942792
    758304 8xsy:SQ (3.0) BS01 rna N/A GO:0000462 ... P62249 38942792
    758305 8xsy:SR (3.0) BS01 rna N/A GO:0002181 ... P08708 38942792
    758306 8xsy:SS (3.0) BS01 rna N/A GO:0002181 ... P62269 38942792
    758307 8xsy:ST (3.0) BS01 rna N/A GO:0000028 ... P39019 38942792
    758308 8xsy:SU (3.0) BS01 rna N/A GO:0002181 ... P60866 38942792
    758309 8xsy:SW (3.0) BS01 rna N/A GO:0002181 ... P62244 38942792
    758310 8xsy:SX (3.0) BS01 rna N/A GO:0002181 ... P62266 38942792
    758311 8xsy:SY (3.0) BS01 rna N/A GO:0002181 ... P62847 38942792
    758312 8xsy:SZ (3.0) BS01 rna N/A GO:0002181 ... P62851 38942792
    758313 8xsy:Sa (3.0) BS01 rna N/A GO:0002181 ... P62854 38942792
    758314 8xsy:Sa (3.0) BS02 ZN N/A GO:0002181 ... P62854 38942792
    758315 8xsy:Sb (3.0) BS01 rna N/A GO:0000028 ... P42677 38942792
    758316 8xsy:Sc (3.0) BS01 rna N/A GO:0000028 ... P62857 38942792
    758317 8xsy:Sd (3.0) BS01 rna N/A GO:0002181 ... P62273 38942792
    758318 8xsy:Sf (3.0) BS01 rna N/A GO:0002181 ... P62979 38942792
    758319 8xsy:Sg (3.0) BS01 rna N/A GO:0001891 ... P63244 38942792
    758320 8xsz:CA (3.2) BS01 rna N/A GO:0003676 ... Q9UQ80 38942792
    758321 8xsz:LA (3.2) BS01 rna N/A GO:0002181 ... P62917 38942792
    758322 8xsz:LA (3.2) BS02 rna N/A GO:0002181 ... P62917 38942792
    758323 8xsz:LA (3.2) BS03 MG N/A GO:0002181 ... P62917 38942792
    758324 8xsz:LB (3.2) BS01 rna N/A GO:0002181 ... P39023 38942792
    758325 8xsz:LC (3.2) BS01 rna N/A GO:0002181 ... P36578 38942792
    758326 8xsz:LC (3.2) BS02 rna N/A GO:0002181 ... P36578 38942792
    758327 8xsz:LD (3.2) BS01 rna N/A GO:0000027 ... P46777 38942792
    758328 8xsz:LD (3.2) BS02 rna N/A GO:0000027 ... P46777 38942792
    758329 8xsz:LE (3.2) BS01 rna N/A GO:0000027 ... Q02878 38942792
    758330 8xsz:LF (3.2) BS01 rna N/A GO:0000463 ... P18124 38942792
    758331 8xsz:LF (3.2) BS02 rna N/A GO:0000463 ... P18124 38942792
    758332 8xsz:LG (3.2) BS01 rna N/A GO:0000470 ... P62424 38942792
    758333 8xsz:LG (3.2) BS02 rna N/A GO:0000470 ... P62424 38942792
    758334 8xsz:LH (3.2) BS01 rna N/A GO:0002181 ... P32969 38942792
    758335 8xsz:LI (3.2) BS01 rna N/A GO:0000027 ... P27635 38942792
    758336 8xsz:LI (3.2) BS02 rna N/A GO:0000027 ... P27635 38942792
    758337 8xsz:LI (3.2) BS03 rna N/A GO:0000027 ... P27635 38942792
    758338 8xsz:LJ (3.2) BS01 rna N/A GO:0000027 ... P62913 38942792
    758339 8xsz:LJ (3.2) BS02 rna N/A GO:0000027 ... P62913 38942792
    758340 8xsz:LL (3.2) BS01 rna N/A GO:0001824 ... P26373 38942792
    758341 8xsz:LL (3.2) BS02 rna N/A GO:0001824 ... P26373 38942792
    758342 8xsz:LM (3.2) BS01 rna N/A GO:0002181 ... P50914 38942792
    758343 8xsz:LN (3.2) BS01 rna N/A GO:0002181 ... P61313 38942792
    758344 8xsz:LN (3.2) BS02 rna N/A GO:0002181 ... P61313 38942792
    758345 8xsz:LO (3.2) BS01 rna N/A GO:0002181 ... P40429 38942792
    758346 8xsz:LP (3.2) BS01 rna N/A GO:0002181 ... P18621 38942792
    758347 8xsz:LP (3.2) BS02 rna N/A GO:0002181 ... P18621 38942792
    758348 8xsz:LQ (3.2) BS01 rna N/A GO:0002181 ... Q07020 38942792
    758349 8xsz:LR (3.2) BS01 rna N/A GO:0002181 ... P84098 38942792
    758350 8xsz:LS (3.2) BS01 rna N/A GO:0002181 ... Q02543 38942792
    758351 8xsz:LS (3.2) BS02 rna N/A GO:0002181 ... Q02543 38942792
    758352 8xsz:LT (3.2) BS01 rna N/A GO:0002181 ... P46778 38942792
    758353 8xsz:LT (3.2) BS02 rna N/A GO:0002181 ... P46778 38942792
    758354 8xsz:LU (3.2) BS01 rna N/A GO:0002181 ... P35268 38942792
    758355 8xsz:LV (3.2) BS01 rna N/A GO:0000122 ... P62829 38942792
    758356 8xsz:LV (3.2) BS02 rna N/A GO:0000122 ... P62829 38942792
    758357 8xsz:LW (3.2) BS01 rna N/A GO:0000027 ... P83731 38942792
    758358 8xsz:LW (3.2) BS02 rna N/A GO:0000027 ... P83731 38942792
    758359 8xsz:LX (3.2) BS01 rna N/A GO:0000027 ... P62750 38942792
    758360 8xsz:LX (3.2) BS02 rna N/A GO:0000027 ... P62750 38942792
    758361 8xsz:LY (3.2) BS01 rna N/A GO:0002181 ... P61254 38942792
    758362 8xsz:LY (3.2) BS02 rna N/A GO:0002181 ... P61254 38942792
    758363 8xsz:LZ (3.2) BS01 rna N/A GO:0002181 ... P61353 38942792
    758364 8xsz:La (3.2) BS01 rna N/A GO:0002181 ... P46776 38942792
    758365 8xsz:Lb (3.2) BS01 rna N/A GO:0002181 ... P47914 38942792
    758366 8xsz:Lc (3.2) BS01 rna N/A GO:0002181 ... P62888 38942792
    758367 8xsz:Lc (3.2) BS02 rna N/A GO:0002181 ... P62888 38942792
    758368 8xsz:Lc (3.2) BS03 peptide N/A GO:0002181 ... P62888 38942792
    758369 8xsz:Ld (3.2) BS01 rna N/A GO:0002181 ... P62899 38942792
    758370 8xsz:Le (3.2) BS01 rna N/A GO:0002181 ... P62910 38942792
    758371 8xsz:Le (3.2) BS02 MG N/A GO:0002181 ... P62910 38942792
    758372 8xsz:Lf (3.2) BS01 rna N/A GO:0000049 ... P18077 38942792
    758373 8xsz:Lg (3.2) BS01 rna N/A GO:0002181 ... P49207 38942792
    758374 8xsz:Lg (3.2) BS02 MG N/A GO:0002181 ... P49207 38942792
    758375 8xsz:Lg (3.2) BS03 ZN N/A GO:0002181 ... P49207 38942792
    758376 8xsz:Lh (3.2) BS01 rna N/A GO:0000463 ... P42766 38942792
    758377 8xsz:Lh (3.2) BS02 rna N/A GO:0000463 ... P42766 38942792
    758378 8xsz:Li (3.2) BS01 rna N/A GO:0002181 ... Q9Y3U8 38942792
    758379 8xsz:Lj (3.2) BS01 rna N/A GO:0002181 ... P61927 38942792
    758380 8xsz:Lj (3.2) BS02 rna N/A GO:0002181 ... P61927 38942792
    758381 8xsz:Lj (3.2) BS03 ZN N/A GO:0002181 ... P61927 38942792
    758382 8xsz:Lk (3.2) BS01 rna N/A GO:0001501 ... P63173 38942792
    758383 8xsz:Ll (3.2) BS01 rna N/A GO:0002181 ... P62891 38942792
    758384 8xsz:Ll (3.2) BS02 rna N/A GO:0002181 ... P62891 38942792
    758385 8xsz:Lm (3.2) BS01 rna N/A GO:0002181 ... P62987 38942792
    758386 8xsz:Lm (3.2) BS02 ZN N/A GO:0002181 ... P62987 38942792
    758387 8xsz:Lo (3.2) BS01 rna N/A GO:0002181 ... P83881 38942792
    758388 8xsz:Lo (3.2) BS02 rna N/A GO:0002181 ... P83881 38942792
    758389 8xsz:Lo (3.2) BS03 ZN N/A GO:0002181 ... P83881 38942792
    758390 8xsz:Lp (3.2) BS01 rna N/A GO:0002181 ... P61513 38942792
    758391 8xsz:Lp (3.2) BS02 rna N/A GO:0002181 ... P61513 38942792
    758392 8xsz:Lp (3.2) BS03 ZN N/A GO:0002181 ... P61513 38942792
    758393 8xsz:Lr (3.2) BS01 rna N/A GO:0002181 ... P46779 38942792
    758394 8xsz:Ls (3.2) BS01 rna N/A GO:0000027 ... P05388 38942792
    758395 8xsz:Lt (3.2) BS01 rna N/A GO:0002181 ... P30050 38942792
    758396 8xsz:SA (3.2) BS01 rna N/A GO:0000028 ... P08865 38942792
    758397 8xsz:SB (3.2) BS01 rna N/A GO:0002181 ... P61247 38942792
    758398 8xsz:SB (3.2) BS02 rna N/A GO:0002181 ... P61247 38942792
    758399 8xsz:SC (3.2) BS01 rna N/A GO:0002181 ... P15880 38942792
    758400 8xsz:SD (3.2) BS01 rna N/A GO:0000977 ... P23396 38942792
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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