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BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    3601 1bpz:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3602 1bpz:A (2.6) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 9287163
    3603 1bq1:A (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    3604 1bq1:A (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    3605 1bq1:B (2.5) BS01 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    3606 1bq1:B (2.5) BS02 UMP 2.1.1.45 GO:0000287 ... P0A884 9826509
    3607 1bq3:A (2.7) BS01 IHP 5.4.2.11 GO:0003824 ... P00950 10369755
    3608 1bq3:D (2.7) BS01 IHP 5.4.2.11 GO:0003824 ... P00950 10369755 PDBbind: -logKd/Ki=5.40, Ki=4uM
    3609 1bq4:A (2.5) BS01 BHC 5.4.2.11 GO:0003824 ... P00950 10369755 MOAD: Ki=6uM
    PDBbind: -logKd/Ki=5.22, Ki=6uM
    3610 1bq5:A (2.05) BS01 CU 1.7.2.1 GO:0005507 ... O68601 9792907
    3611 1bq5:A (2.05) BS02 CU 1.7.2.1 GO:0005507 ... O68601 9792907
    3612 1bq6:A (1.56) BS01 COA 2.3.1.74 GO:0009058 ... P30074 10426957
    3613 1bq8:A (1.1) BS01 FE ? GO:0005506 ... P24297 N/A
    3614 1bq9:A (1.2) BS01 FE ? GO:0005506 ... P24297 N/A
    3615 1bqb:A (1.72) BS01 ZN 3.4.24.29 GO:0004222 ... P81177 9753696
    3616 1bqb:A (1.72) BS02 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    3617 1bqb:A (1.72) BS03 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    3618 1bqb:A (1.72) BS04 CA 3.4.24.29 GO:0004222 ... P81177 9753696
    3619 1bqe:A (2.45) BS01 FAD 1.18.1.2 GO:0016491 ... P21890 11152461
    3620 1bqi:A (2.5) BS01 SBA 3.4.22.2 GO:0006508 ... P00784 9804696
    3621 1bqk:A (1.35) BS01 CU ? GO:0005507 ... P19567 10364229
    3622 1bqm:A (3.1) BS01 HBY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 9813120 PDBbind: -logKd/Ki=7.35, IC50=0.045uM
    3623 1bqn:A (3.3) BS01 HBY 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 9813120 PDBbind: -logKd/Ki=6.22, IC50=0.60uM
    3624 1bqo:A (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    3625 1bqo:A (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    3626 1bqo:A (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3627 1bqo:A (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3628 1bqo:A (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3629 1bqo:B (2.3) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    3630 1bqo:B (2.3) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9733482
    3631 1bqo:B (2.3) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3632 1bqo:B (2.3) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3633 1bqo:B (2.3) BS05 CA 3.4.24.17 GO:0004222 ... P08254 9733482
    3634 1bqo:B (2.3) BS06 N25 3.4.24.17 GO:0004222 ... P08254 9733482 MOAD: ic50=18.4nM
    PDBbind: -logKd/Ki=7.74, IC50=18.4nM
    BindingDB: IC50=18nM, Ki=18nM
    3635 1bqp:A (2.1) BS01 CA ? GO:0030246 ... P02867 N/A
    3636 1bqp:A (2.1) BS02 MN ? GO:0030246 ... P02867 N/A
    3637 1bqp:A (2.1) BS03 MAN ? GO:0030246 ... P02867 N/A
    3638 1bqp:A (2.1) BS04 BMA ? GO:0030246 ... P02867 N/A
    3639 1bqp:B (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    3640 1bqp:B (2.1) BS02 BMA ? GO:0030246 ... P02867 N/A
    3641 1bqp:C (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    3642 1bqp:C (2.1) BS02 CA ? GO:0030246 ... P02867 N/A
    3643 1bqp:C (2.1) BS03 BMA ? GO:0030246 ... P02867 N/A
    3644 1bqp:C (2.1) BS04 MN ? GO:0030246 ... P02867 N/A
    3645 1bqp:D (2.1) BS01 MAN ? GO:0030246 ... P02867 N/A
    3646 1bqp:D (2.1) BS02 BMA ? GO:0030246 ... P02867 N/A
    3647 1bqq:M (2.75) BS01 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    3648 1bqq:M (2.75) BS02 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    3649 1bqq:M (2.75) BS03 ZN 3.4.24.80 GO:0004222 ... P50281 9724659
    3650 1bqq:M (2.75) BS04 CA 3.4.24.80 GO:0004222 ... P50281 9724659
    3651 1bqr:A (1.6) BS01 CU ? GO:0005507 ... P19567 10364229
    3652 1bqx:A (-1.00) BS01 SF4 ? GO:0009055 ... Q45560 9874217
    3653 1bqx:A (-1.00) BS02 SF4 ? GO:0009055 ... Q45560 9874217
    3654 1bqy:A (2.5) BS01 0GJ 3.4.21.- GO:0004252 ... Q91516 9753698
    3655 1bqy:B (2.5) BS01 0GJ 3.4.21.- GO:0004252 ... Q91516 9753698
    3656 1br1:A (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3657 1br1:A (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3658 1br1:A (3.5) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3659 1br1:C (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3660 1br1:C (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3661 1br1:C (3.5) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3662 1br1:E (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3663 1br1:E (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3664 1br1:E (3.5) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3665 1br1:G (3.5) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3666 1br1:G (3.5) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3667 1br1:G (3.5) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3668 1br2:A (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3669 1br2:A (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3670 1br2:A (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3671 1br2:B (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3672 1br2:B (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3673 1br2:B (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3674 1br2:C (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3675 1br2:C (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3676 1br2:C (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3677 1br2:D (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3678 1br2:D (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3679 1br2:D (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3680 1br2:E (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3681 1br2:E (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3682 1br2:E (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3683 1br2:F (2.9) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3684 1br2:F (2.9) BS02 ALF 3.6.1.32 GO:0003774 ... P10587 9741621
    3685 1br2:F (2.9) BS03 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3686 1br4:A (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3687 1br4:A (3.62) BS02 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3688 1br4:A (3.62) BS03 BEF 3.6.1.32 GO:0003774 ... P10587 9741621
    3689 1br4:C (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3690 1br4:C (3.62) BS02 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3691 1br4:C (3.62) BS03 BEF 3.6.1.32 GO:0003774 ... P10587 9741621
    3692 1br4:E (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3693 1br4:E (3.62) BS02 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3694 1br4:E (3.62) BS03 BEF 3.6.1.32 GO:0003774 ... P10587 9741621
    3695 1br4:G (3.62) BS01 MG 3.6.1.32 GO:0003774 ... P10587 9741621
    3696 1br4:G (3.62) BS02 ADP 3.6.1.32 GO:0003774 ... P10587 9741621
    3697 1br4:G (3.62) BS03 BEF 3.6.1.32 GO:0003774 ... P10587 9741621
    3698 1br5:A (2.5) BS01 NEO 3.2.2.22 GO:0017148 ... P02879 9086280 MOAD: Ki>2mM
    PDBbind: -logKd/Ki=2.70, Ki>2mM
    3699 1br6:A (2.3) BS01 PT1 3.2.2.22 GO:0017148 ... P02879 9086280 MOAD: Ki=0.6mM
    PDBbind: -logKd/Ki=3.22, Ki=0.6mM
    3700 1br8:I (2.9) BS01 peptide ? GO:0002020 ... P01008 9761669
    3701 1bra:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00763 8478942
    3702 1bra:A (2.2) BS02 BEN 3.4.21.4 GO:0004252 ... P00763 8478942 MOAD: Ki=15000uM
    PDBbind: -logKd/Ki=1.82, Ki=15000uM
    3703 1brd:A (3.5) BS01 RET ? GO:0005216 ... P02945 2359127
    3704 1brf:A (0.95) BS01 FE ? GO:0005506 ... P24297 N/A
    3705 1brg:C (2.2) BS01 ZN 3.1.27.- GO:0003723 ... P00648 15299323
    3706 1brh:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    3707 1brj:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    3708 1brk:C (2.0) BS01 ZN 3.1.27.- GO:0003723 ... P00648 8605178
    3709 1brn:L (1.76) BS01 dna 3.1.27.- GO:0003723 ... P00648 8110767
    3710 1brn:M (1.76) BS01 dna 3.1.27.- GO:0003723 ... P00648 8110767
    3711 1brp:A (2.5) BS01 RTL ? GO:0001654 ... P02753 8464067
    3712 1brr:A (2.9) BS01 MAN ? GO:0005216 ... P02945 9751724
    3713 1brr:A (2.9) BS02 RET ? GO:0005216 ... P02945 9751724
    3714 1brr:A (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    3715 1brr:A (2.9) BS04 ARC ? GO:0005216 ... P02945 9751724
    3716 1brr:A (2.9) BS05 ARC ? GO:0005216 ... P02945 9751724
    3717 1brr:A (2.9) BS06 ARC ? GO:0005216 ... P02945 9751724
    3718 1brr:A (2.9) BS07 ARC ? GO:0005216 ... P02945 9751724
    3719 1brr:B (2.9) BS01 GLC ? GO:0005216 ... P02945 9751724
    3720 1brr:B (2.9) BS02 RET ? GO:0005216 ... P02945 9751724
    3721 1brr:B (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    3722 1brr:B (2.9) BS04 ARC ? GO:0005216 ... P02945 9751724
    3723 1brr:B (2.9) BS05 ARC ? GO:0005216 ... P02945 9751724
    3724 1brr:B (2.9) BS06 ARC ? GO:0005216 ... P02945 9751724
    3725 1brr:B (2.9) BS07 ARC ? GO:0005216 ... P02945 9751724
    3726 1brr:C (2.9) BS01 MAN ? GO:0005216 ... P02945 9751724
    3727 1brr:C (2.9) BS02 ARC ? GO:0005216 ... P02945 9751724
    3728 1brr:C (2.9) BS03 ARC ? GO:0005216 ... P02945 9751724
    3729 1brr:C (2.9) BS04 RET ? GO:0005216 ... P02945 9751724
    3730 1brr:C (2.9) BS05 ARC ? GO:0005216 ... P02945 9751724
    3731 1brr:C (2.9) BS06 ARC ? GO:0005216 ... P02945 9751724
    3732 1bru:P (2.3) BS01 1NB 3.4.21.71 GO:0004175 ... P08419 N/A
    3733 1brw:A (2.1) BS01 PO4 2.4.2.2 GO:0004645 ... P77836 9817849
    3734 1brw:A (2.1) BS02 CA 2.4.2.2 GO:0004645 ... P77836 9817849
    3735 1brw:B (2.1) BS01 PO4 2.4.2.2 GO:0004645 ... P77836 9817849
    3736 1brw:B (2.1) BS02 CA 2.4.2.2 GO:0004645 ... P77836 9817849
    3737 1brw:B (2.1) BS03 URA 2.4.2.2 GO:0004645 ... P77836 9817849
    3738 1brx:A (2.3) BS01 RET ? GO:0005216 ... P02945 9632391
    3739 1bs1:A (1.8) BS01 MG 6.3.3.3 GO:0000287 ... P13000 9865950
    3740 1bs1:A (1.8) BS02 ADP 6.3.3.3 GO:0000287 ... P13000 9865950
    3741 1bs1:A (1.8) BS03 DAA 6.3.3.3 GO:0000287 ... P13000 9865950
    3742 1bs2:A (2.75) BS01 ARG 6.1.1.19 GO:0000166 ... Q05506 9736621
    3743 1bs3:A (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    3744 1bs3:A (1.55) BS02 F 1.15.1.1 GO:0004784 ... P80293 10231372
    3745 1bs3:B (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    3746 1bs3:B (1.55) BS02 F 1.15.1.1 GO:0004784 ... P80293 10231372
    3747 1bs4:A (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3748 1bs4:B (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3749 1bs4:C (1.9) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3750 1bs5:A (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3751 1bs5:B (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3752 1bs5:C (2.5) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3753 1bs6:A (2.1) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3754 1bs6:B (2.1) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3755 1bs6:C (2.1) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3756 1bs8:A (2.2) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3757 1bs8:A (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3758 1bs8:B (2.2) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3759 1bs8:B (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3760 1bs8:C (2.2) BS01 peptide 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3761 1bs8:C (2.2) BS02 ZN 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3762 1bsi:A (2.0) BS01 CA 3.2.1.1 GO:0003824 ... P04746 10091666
    3763 1bsj:A (3.0) BS01 CO 3.5.1.88 GO:0005515 ... P0A6K3 10200158
    3764 1bsj:A (3.0) BS02 MLN 3.5.1.88 GO:0005515 ... P0A6K3 10200158
    3765 1bsk:A (3.0) BS01 ZN 3.5.1.88 GO:0005515 ... P0A6K3 10200158
    3766 1bsk:A (3.0) BS02 MLN 3.5.1.88 GO:0005515 ... P0A6K3 10200158 PDBbind: -logKd/Ki=4.12, Ki=76uM
    3767 1bsm:A (1.35) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    3768 1bsm:B (1.35) BS01 FE 1.15.1.1 GO:0004784 ... P80293 10231372
    3769 1bso:A (2.23) BS01 BRC ? GO:0005515 ... P02754 9827560
    3770 1bsr:A (1.9) BS01 SO4 4.6.1.18 GO:0003676 ... P00669 15299514
    3771 1bsr:B (1.9) BS01 SO4 4.6.1.18 GO:0003676 ... P00669 15299514
    3772 1bss:A (2.15) BS01 dna 3.1.21.4 GO:0003677 ... P04390 9811827
    3773 1bss:A (2.15) BS02 dna 3.1.21.4 GO:0003677 ... P04390 9811827
    3774 1bss:A (2.15) BS03 CA 3.1.21.4 GO:0003677 ... P04390 9811827
    3775 1bss:A (2.15) BS04 CA 3.1.21.4 GO:0003677 ... P04390 9811827
    3776 1bss:B (2.15) BS01 dna 3.1.21.4 GO:0003677 ... P04390 9811827
    3777 1bss:B (2.15) BS02 dna 3.1.21.4 GO:0003677 ... P04390 9811827
    3778 1bsu:A (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10074946 PDBbind: Kd=230nM
    3779 1bsu:A (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10074946 PDBbind: Kd=230nM
    3780 1bsu:A (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10074946
    3781 1bsu:B (2.0) BS01 dna 3.1.21.4 GO:0003677 ... P04390 10074946 PDBbind: Kd=230nM
    3782 1bsu:B (2.0) BS02 dna 3.1.21.4 GO:0003677 ... P04390 10074946 PDBbind: Kd=230nM
    3783 1bsu:B (2.0) BS03 CA 3.1.21.4 GO:0003677 ... P04390 10074946
    3784 1bsv:A (2.2) BS01 NDP 1.1.1.271 GO:0005737 ... P32055 9862812
    3785 1bsw:A (1.95) BS01 ZN 3.4.24.- GO:0004222 ... Q9PW35 9784374
    3786 1bsw:A (1.95) BS02 CA 3.4.24.- GO:0004222 ... Q9PW35 9784374
    3787 1bsx:A (3.7) BS01 peptide ? GO:0003677 ... P10828 9808622
    3788 1bsx:A (3.7) BS02 T3 ? GO:0003677 ... P10828 9808622
    3789 1bsx:B (3.7) BS01 peptide ? GO:0003677 ... P10828 9808622
    3790 1bsx:B (3.7) BS02 T3 ? GO:0003677 ... P10828 9808622
    3791 1bsz:A (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3792 1bsz:B (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3793 1bsz:C (1.9) BS01 FE 3.5.1.88 GO:0005515 ... P0A6K3 9846875
    3794 1bt4:A (2.3) BS01 PLP 2.6.1.52 GO:0004648 ... Q59196 N/A
    3795 1bt5:A (1.8) BS01 IM2 3.5.2.6 GO:0005515 ... P62593 N/A
    3796 1bt6:A (2.4) BS01 peptide ? GO:0001765 ... P60903 9886297
    3797 1bt6:A (2.4) BS02 peptide ? GO:0001765 ... P60903 9886297
    3798 1bt6:B (2.4) BS01 peptide ? GO:0001765 ... P60903 9886297
    3799 1bt6:B (2.4) BS02 peptide ? GO:0001765 ... P60903 9886297
    3800 1bt7:A (-1.00) BS01 ZN 2.7.7.48
    3.4.21.98
    3.4.22.-
    3.6.1.15
    3.6.4.13
    GO:0006508 ... P26663 10366511

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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