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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 761934 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    1801 1asl:A (2.6) BS02 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1802 1asl:B (2.6) BS01 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1803 1asl:B (2.6) BS02 PLA 2.6.1.1 GO:0003824 ... P00509 8196059
    1804 1asm:A (2.35) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1805 1asm:B (2.35) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1806 1asn:A (2.5) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1807 1asn:B (2.5) BS01 PLP 2.6.1.1 GO:0003824 ... P00509 8196059
    1808 1aso:A (2.2) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1809 1aso:A (2.2) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1810 1aso:A (2.2) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1811 1aso:A (2.2) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1812 1aso:B (2.2) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1813 1aso:B (2.2) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1814 1aso:B (2.2) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1815 1aso:B (2.2) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1816 1asp:A (2.59) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1817 1asp:A (2.59) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1818 1asp:A (2.59) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1819 1asp:A (2.59) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1820 1asp:B (2.59) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1821 1asp:B (2.59) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1822 1asp:B (2.59) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1823 1asp:B (2.59) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1824 1asq:A (2.32) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1825 1asq:A (2.32) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1826 1asq:A (2.32) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1827 1asq:A (2.32) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1828 1asq:A (2.32) BS05 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1829 1asq:A (2.32) BS06 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1830 1asq:B (2.32) BS01 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1831 1asq:B (2.32) BS02 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1832 1asq:B (2.32) BS03 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1833 1asq:B (2.32) BS04 CU 1.10.3.3 GO:0005507 ... P37064 8478945
    1834 1asq:B (2.32) BS05 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1835 1asq:B (2.32) BS06 AZI 1.10.3.3 GO:0005507 ... P37064 8478945
    1836 1ast:A (1.8) BS01 ZN 3.4.24.21 GO:0004222 ... P07584 1319561
    1837 1asy:A (2.9) BS01 rna 6.1.1.12 GO:0000166 ... P04802 2047877
    1838 1asy:B (2.9) BS01 rna 6.1.1.12 GO:0000166 ... P04802 2047877
    1839 1asz:A (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P04802 8313877
    1840 1asz:A (3.0) BS02 ATP 6.1.1.12 GO:0000166 ... P04802 8313877
    1841 1asz:B (3.0) BS01 rna 6.1.1.12 GO:0000166 ... P04802 8313877
    1842 1asz:B (3.0) BS02 ATP 6.1.1.12 GO:0000166 ... P04802 8313877
    1843 1at1:A (2.8) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 2405902
    1844 1at1:A (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    1845 1at1:B (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    1846 1at1:C (2.8) BS01 MLI 2.1.3.2 GO:0004070 ... P0A786 2405902
    1847 1at1:C (2.8) BS02 PCT 2.1.3.2 GO:0004070 ... P0A786 2405902
    1848 1at1:D (2.8) BS01 ZN ? GO:0005515 ... P0A7F3 2405902
    1849 1at3:A (2.5) BS01 DFP 3.4.21.97 GO:0004252 ... Q69527 9369473
    1850 1at3:B (2.5) BS01 DFP 3.4.21.97 GO:0004252 ... Q69527 9369473
    1851 1at9:A (2.8) BS01 RET ? GO:0005216 ... P02945 9296502
    1852 1atg:A (1.2) BS01 WO4 ? GO:0015689 ... Q7SIH2 9862806
    1853 1ati:B (2.75) BS01 peptide 6.1.1.14 GO:0000166 ... P56206 7556056
    1854 1atj:A (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1855 1atj:A (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1856 1atj:A (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1857 1atj:B (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1858 1atj:B (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1859 1atj:B (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1860 1atj:C (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1861 1atj:C (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1862 1atj:C (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1863 1atj:D (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1864 1atj:D (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1865 1atj:D (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1866 1atj:E (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1867 1atj:E (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1868 1atj:E (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1869 1atj:F (2.15) BS01 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1870 1atj:F (2.15) BS02 CA 1.11.1.7 GO:0004601 ... P00433 9406554
    1871 1atj:F (2.15) BS03 HEM 1.11.1.7 GO:0004601 ... P00433 9406554
    1872 1atk:A (2.2) BS01 E64 3.4.22.38 GO:0006508 ... P43235 9033588
    1873 1atl:A (1.8) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8078901
    1874 1atl:A (1.8) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    1875 1atl:A (1.8) BS03 0QI 3.4.24.42 GO:0004222 ... P15167 8078901 MOAD: Ki=0.52uM
    1876 1atl:B (1.8) BS01 ZN 3.4.24.42 GO:0004222 ... P15167 8078901
    1877 1atl:B (1.8) BS02 CA 3.4.24.42 GO:0004222 ... P15167 8078901
    1878 1atl:B (1.8) BS03 0QI 3.4.24.42 GO:0004222 ... P15167 8078901 MOAD: Ki=0.52uM
    1879 1atn:A (2.8) BS01 ATP 3.6.4.- GO:0000287 ... P68135 2395459
    1880 1atn:D (2.8) BS01 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    1881 1atn:D (2.8) BS02 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    1882 1atn:D (2.8) BS03 CA 3.1.21.1 GO:0002283 ... P00639 2395459
    1883 1atp:E (2.2) BS01 peptide 2.7.11.11 GO:0000122 ... P05132 15299527
    1884 1atp:E (2.2) BS02 MN 2.7.11.11 GO:0000122 ... P05132 15299527
    1885 1atp:E (2.2) BS03 ATP 2.7.11.11 GO:0000122 ... P05132 15299527 MOAD: Kd=60nM
    1886 1atr:A (2.34) BS01 PO4 3.6.4.10 GO:0005524 ... P19120 8226982
    1887 1atr:A (2.34) BS02 ADP 3.6.4.10 GO:0005524 ... P19120 8226982 PDBbind: -logKd/Ki=6.96, Kd=110nM
    1888 1ats:A (2.43) BS01 ADP 3.6.4.10 GO:0005524 ... P19120 8226982
    1889 1au0:A (2.6) BS01 SDK 3.4.22.38 GO:0006508 ... P43235 N/A PDBbind: -logKd/Ki=7.66, Ki=22nM
    BindingDB: Ki=22nM
    1890 1au1:A (2.2) BS01 BGC ? GO:0002250 ... P01574 9342320
    1891 1au1:B (2.2) BS01 ZN ? GO:0002250 ... P01574 9342320
    1892 1au2:A (2.6) BS01 POS 3.4.22.38 GO:0006508 ... P43235 N/A PDBbind: -logKd/Ki=7.89, Ki=13nM
    1893 1au3:A (2.5) BS01 PCM 3.4.22.38 GO:0006508 ... P43235 9733481
    1894 1au4:A (2.3) BS01 INP 3.4.22.38 GO:0006508 ... P43235 9733481
    1895 1au7:A (2.3) BS01 dna ? GO:0000981 ... P10037 9009203
    1896 1au7:A (2.3) BS02 dna ? GO:0000981 ... P10037 9009203
    1897 1au7:B (2.3) BS01 dna ? GO:0000981 ... P10037 9009203
    1898 1au7:B (2.3) BS02 dna ? GO:0000981 ... P10037 9009203
    1899 1au8:A (1.9) BS01 0H8 3.4.21.20 GO:0002003 ... P08311 N/A
    1900 1au9:A (1.8) BS01 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    1901 1au9:A (1.8) BS02 CA 3.4.21.62 GO:0004252 ... P00782 2684274
    1902 1aud:A (-1.00) BS01 rna ? GO:0003676 ... P09012 9312034
    1903 1aui:A (2.1) BS01 ZN 3.1.3.16 GO:0000082 ... Q08209 8524402
    1904 1aui:A (2.1) BS02 FE 3.1.3.16 GO:0000082 ... Q08209 8524402
    1905 1aui:B (2.1) BS01 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    1906 1aui:B (2.1) BS02 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    1907 1aui:B (2.1) BS03 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    1908 1aui:B (2.1) BS04 CA 3.1.3.16 GO:0001569 ... P63098 8524402
    1909 1auj:A (2.1) BS01 PPB 3.4.21.4 GO:0004175 ... P00760 9341205 PDBbind: -logKd/Ki=8.25, Ki=5.6nM
    1910 1auk:A (2.1) BS01 MG 3.1.6.8 GO:0004065 ... P15289 9521684
    1911 1aus:L (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    1912 1aus:M (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    1913 1aus:N (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    1914 1aus:O (2.2) BS01 MG 4.1.1.39 GO:0000287 ... P00875 9092835
    1915 1aut:C (2.8) BS01 0G6 3.4.21.69 GO:0004252 ... P04070 9003757
    1916 1aux:A (2.3) BS01 CA ? GO:0005524 ... P17599 9463376
    1917 1aux:A (2.3) BS02 AGS ? GO:0005524 ... P17599 9463376
    1918 1aux:B (2.3) BS01 CA ? GO:0005524 ... P17599 9463376
    1919 1aux:B (2.3) BS02 AGS ? GO:0005524 ... P17599 9463376
    1920 1av4:A (2.2) BS01 CU 1.4.3.21 GO:0005507 ... P46881 9405045
    1921 1av5:B (2.0) BS01 AP2 3.4.22.-
    3.9.1.-    		 GO:0000118 ... P49773 9323207
    1922 1av6:A (2.8) BS01 rna 2.1.1.57 GO:0003746 ... P07617 9660928
    1923 1av6:A (2.8) BS02 MGT 2.1.1.57 GO:0003746 ... P07617 9660928
    1924 1av6:A (2.8) BS03 SAH 2.1.1.57 GO:0003746 ... P07617 9660928
    1925 1av8:A (2.8) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    1926 1av8:B (2.8) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 9558317
    1927 1ava:A (1.9) BS01 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    1928 1ava:A (1.9) BS02 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    1929 1ava:A (1.9) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    1930 1ava:B (1.9) BS01 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    1931 1ava:B (1.9) BS02 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    1932 1ava:B (1.9) BS03 CA 3.2.1.1 GO:0004556 ... P04063 9634702
    1933 1avc:A (2.9) BS01 CA ? GO:0001725 ... P79134 9748523
    1934 1avc:A (2.9) BS02 CA ? GO:0001725 ... P79134 9748523
    1935 1avc:A (2.9) BS03 CA ? GO:0001725 ... P79134 9748523
    1936 1avc:A (2.9) BS04 CA ? GO:0001725 ... P79134 9748523
    1937 1avc:A (2.9) BS05 CA ? GO:0001725 ... P79134 9748523
    1938 1avc:A (2.9) BS06 CA ? GO:0001725 ... P79134 9748523
    1939 1avd:A (2.7) BS01 BTN ? GO:0005576 ... P02701 8515446 PDBbind: -logKd/Ki=15.00, Kd=1fM
    1940 1avd:B (2.7) BS01 BTN ? GO:0005576 ... P02701 8515446
    1941 1avf:A (2.36) BS01 peptide 3.4.23.3 GO:0004190 ... P20142 9406551
    1942 1avf:J (2.36) BS01 peptide 3.4.23.3 GO:0004190 ... P20142 9406551
    1943 1avh:A (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    1944 1avh:A (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    1945 1avh:A (2.3) BS03 CA ? GO:0001786 ... P08758 1311770
    1946 1avh:B (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    1947 1avh:B (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    1948 1avl:A (2.8) BS01 CU 1.4.3.21 GO:0005507 ... P46881 9405045
    1949 1avm:A (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    1950 1avm:A (1.55) BS02 AZI 1.15.1.1 GO:0004784 ... P80293 N/A
    1951 1avm:B (1.55) BS01 FE 1.15.1.1 GO:0004784 ... P80293 N/A
    1952 1avm:B (1.55) BS02 AZI 1.15.1.1 GO:0004784 ... P80293 N/A
    1953 1avn:A (2.0) BS01 ZN 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 9265618
    1954 1avn:A (2.0) BS02 AZI 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 9265618 BindingDB: Ki=1500000nM
    1955 1avn:A (2.0) BS03 HSM 4.2.1.1
    4.2.1.69    		 GO:0002009 ... P00918 9265618 MOAD: Kd=0.125mM
    PDBbind: -logKd/Ki=3.90, Kd=0.125mM
    1956 1avp:A (2.6) BS01 peptide 3.4.22.39 GO:0003677 ... P03252 8617222
    1957 1avr:A (2.3) BS01 CA ? GO:0001786 ... P08758 1311770
    1958 1avr:A (2.3) BS02 CA ? GO:0001786 ... P08758 1311770
    1959 1avr:A (2.3) BS03 CA ? GO:0001786 ... P08758 1311770
    1960 1avr:A (2.3) BS04 CA ? GO:0001786 ... P08758 1311770
    1961 1avr:A (2.3) BS05 CA ? GO:0001786 ... P08758 1311770
    1962 1avs:A (1.75) BS01 CA ? GO:0005509 ... P02588 9367759
    1963 1avs:A (1.75) BS02 CA ? GO:0005509 ... P02588 9367759
    1964 1avs:B (1.75) BS01 CA ? GO:0005509 ... P02588 9367759
    1965 1avs:B (1.75) BS02 CA ? GO:0005509 ... P02588 9367759
    1966 1avw:A (1.75) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9466914
    1967 1avx:A (1.9) BS01 CA 3.4.21.4 GO:0004252 ... P00761 9466914
    1968 1aw1:A (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062 PDBbind: -logKd/Ki=1.05, Ki=89mM
    1969 1aw1:B (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062 PDBbind: -logKd/Ki=1.05, Ki=89mM
    1970 1aw1:D (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    1971 1aw1:E (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    1972 1aw1:G (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    1973 1aw1:H (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    1974 1aw1:J (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    1975 1aw1:K (2.7) BS01 PGA 5.3.1.1 GO:0004807 ... P50921 9442062
    1976 1aw3:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9425037
    1977 1aw5:A (2.3) BS01 ZN 4.2.1.24 GO:0004655 ... P05373 9406553
    1978 1aw6:A (-1.00) BS01 CD ? GO:0000981 ... P04386 9460244
    1979 1aw6:A (-1.00) BS02 CD ? GO:0000981 ... P04386 9460244
    1980 1aw8:B (2.2) BS01 peptide 4.1.1.11 GO:0004068 ... P0A790 9546220
    1981 1aw8:E (2.2) BS01 peptide 4.1.1.11 GO:0004068 ... P0A790 9546220
    1982 1aw8:E (2.2) BS02 peptide 4.1.1.11 GO:0004068 ... P0A790 9546220
    1983 1awb:A (2.5) BS01 CA 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    1984 1awb:A (2.5) BS02 CA 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    1985 1awb:A (2.5) BS03 IPD 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    1986 1awb:B (2.5) BS01 CA 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    1987 1awb:B (2.5) BS02 CA 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    1988 1awb:B (2.5) BS03 IPD 3.1.3.25
    3.1.3.94    		 GO:0000287 ... P29218 N/A
    1989 1awc:A (2.15) BS01 dna ? GO:0003700 ... Q00422 9461436
    1990 1awc:A (2.15) BS02 dna ? GO:0003700 ... Q00422 9461436
    1991 1awd:A (1.4) BS01 FES ? GO:0009055 ... P56408 10545324
    1992 1awf:H (2.2) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 9578548
    1993 1awf:H (2.2) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 9578548
    1994 1awf:H (2.2) BS03 GR4 3.4.21.5 GO:0004252 ... P00734 9578548 PDBbind: -logKd/Ki=6.01, Ki=0.97uM
    1995 1awh:B (3.0) BS01 GR3 3.4.21.5 GO:0004252 ... P00734 9578548
    1996 1awh:D (3.0) BS01 GR3 3.4.21.5 GO:0004252 ... P00734 9578548 PDBbind: -logKd/Ki=6.08, Ki=0.83uM
    1997 1awi:A (2.2) BS01 peptide ? GO:0000774 ... P07737 9360613
    1998 1awi:B (2.2) BS01 peptide ? GO:0000774 ... P07737 9360613
    1999 1awp:A (2.0) BS01 HEM ? GO:0020037 ... P04166 9484218
    2000 1awp:B (2.0) BS01 HEM ? GO:0020037 ... P04166 9484218
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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