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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    15401 1gtn:N (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15402 1gtn:N (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15403 1gtn:O (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15404 1gtn:O (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15405 1gtn:O (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15406 1gtn:P (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15407 1gtn:P (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15408 1gtn:P (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15409 1gtn:Q (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15410 1gtn:Q (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15411 1gtn:Q (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15412 1gtn:R (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15413 1gtn:R (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15414 1gtn:R (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15415 1gtn:S (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15416 1gtn:S (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15417 1gtn:S (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15418 1gtn:T (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15419 1gtn:T (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15420 1gtn:T (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15421 1gtn:U (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15422 1gtn:U (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15423 1gtn:U (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15424 1gtn:V (2.5) BS01 rna ? GO:0003723 ... Q9X6J6 11914485
    15425 1gtn:V (2.5) BS02 TRP ? GO:0003723 ... Q9X6J6 11914485
    15426 1gtn:V (2.5) BS03 TRP ? GO:0003723 ... Q9X6J6 11914485
    15427 1gtq:A (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    15428 1gtq:B (2.3) BS01 ZN 4.2.3.12 GO:0003874 ... P27213 8137809
    15429 1gtr:A (2.5) BS01 rna 6.1.1.18 GO:0000166 ... P00962 1857417
    15430 1gtr:A (2.5) BS02 ATP 6.1.1.18 GO:0000166 ... P00962 1857417
    15431 1gts:A (2.8) BS01 rna 6.1.1.18 GO:0000166 ... P00962 8364025
    15432 1gts:A (2.8) BS02 AMP 6.1.1.18 GO:0000166 ... P00962 8364025
    15433 1gtt:A (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    15434 1gtt:B (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    15435 1gtt:C (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    15436 1gtt:D (1.7) BS01 CA 4.1.1.68
    5.3.3.10
    GO:0003824 ... P37352 11863436
    15437 1gtv:A (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    15438 1gtv:A (1.55) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    15439 1gtv:A (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    15440 1gtv:A (1.55) BS04 TMP 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    15441 1gtv:B (1.55) BS01 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    15442 1gtv:B (1.55) BS02 TYD 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    15443 1gtv:B (1.55) BS03 MG 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    15444 1gtv:B (1.55) BS04 TMP 2.7.4.9 GO:0000287 ... P9WKE1 11914484
    15445 1gtw:A (1.85) BS01 dna ? GO:0003700 ... P17676 N/A
    15446 1gtw:A (1.85) BS02 dna ? GO:0003700 ... P17676 N/A
    15447 1gtw:B (1.85) BS01 dna ? GO:0003700 ... P17676 N/A
    15448 1gtw:B (1.85) BS02 dna ? GO:0003700 ... P17676 N/A
    15449 1gtz:A (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15450 1gtz:B (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15451 1gtz:C (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15452 1gtz:D (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15453 1gtz:E (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15454 1gtz:F (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15455 1gtz:G (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15456 1gtz:H (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15457 1gtz:I (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15458 1gtz:J (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15459 1gtz:K (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15460 1gtz:L (1.6) BS01 DHK 4.2.1.10 GO:0003855 ... P15474 11937054
    15461 1gu1:A (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    15462 1gu1:A (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15463 1gu1:B (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    PDBbind: -logKd/Ki=4.52, Ki=30uM
    BindingDB: Kd=30000nM
    15464 1gu1:B (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15465 1gu1:C (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15466 1gu1:C (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15467 1gu1:D (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15468 1gu1:D (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15469 1gu1:E (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15470 1gu1:E (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15471 1gu1:F (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15472 1gu1:F (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15473 1gu1:G (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15474 1gu1:G (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15475 1gu1:H (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15476 1gu1:H (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15477 1gu1:I (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15478 1gu1:I (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15479 1gu1:J (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15480 1gu1:J (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15481 1gu1:K (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15482 1gu1:K (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15483 1gu1:L (1.8) BS01 FA1 4.2.1.10 GO:0003855 ... P15474 11937054 MOAD: Ki=30uM
    BindingDB: Kd=30000nM
    15484 1gu1:L (1.8) BS02 GOL 4.2.1.10 GO:0003855 ... P15474 11937054
    15485 1gu2:A (1.19) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    15486 1gu2:B (1.19) BS01 HEC ? GO:0003674 ... Q9RQB9 16341897
    15487 1gu3:A (2.3) BS01 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    15488 1gu3:A (2.3) BS02 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    15489 1gu3:A (2.3) BS03 BGC 3.2.1.4 GO:0016798 ... P14090 12079353
    15490 1gu4:A (1.8) BS01 dna ? GO:0003700 ... P17676 N/A
    15491 1gu4:A (1.8) BS02 dna ? GO:0003700 ... P17676 N/A
    15492 1gu4:B (1.8) BS01 dna ? GO:0003700 ... P17676 N/A
    15493 1gu4:B (1.8) BS02 dna ? GO:0003700 ... P17676 N/A
    15494 1gu5:A (2.1) BS01 dna ? GO:0003700 ... P17676 N/A
    15495 1gu5:A (2.1) BS02 dna ? GO:0003700 ... P17676 N/A
    15496 1gu5:B (2.1) BS01 dna ? GO:0003700 ... P17676 N/A
    15497 1gu5:B (2.1) BS02 dna ? GO:0003700 ... P17676 N/A
    15498 1gu6:A (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15499 1gu6:A (2.5) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15500 1gu6:A (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15501 1gu6:A (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15502 1gu6:A (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15503 1gu6:A (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15504 1gu6:C (2.5) BS01 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15505 1gu6:C (2.5) BS02 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15506 1gu6:C (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15507 1gu6:C (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15508 1gu6:C (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15509 1gu6:C (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15510 1gu6:C (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15511 1gu6:E (2.5) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15512 1gu6:E (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15513 1gu6:E (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15514 1gu6:E (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15515 1gu6:E (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15516 1gu6:E (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15517 1gu6:E (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15518 1gu6:G (2.5) BS01 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15519 1gu6:G (2.5) BS02 CA 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15520 1gu6:G (2.5) BS03 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15521 1gu6:G (2.5) BS04 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15522 1gu6:G (2.5) BS05 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15523 1gu6:G (2.5) BS06 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15524 1gu6:G (2.5) BS07 HEC 1.7.2.2 GO:0005506 ... P0ABK9 11863430
    15525 1gu8:A (2.27) BS01 RET ? GO:0005216 ... P42196 11937052
    15526 1gua:A (2.0) BS01 MG 3.6.5.2 GO:0003924 ... P62834 8756332
    15527 1gua:A (2.0) BS02 GNP 3.6.5.2 GO:0003924 ... P62834 8756332 MOAD: Kd=40nM
    15528 1gua:B (2.0) BS01 CA 2.7.11.1 GO:0007165 ... P04049 8756332
    15529 1gud:A (1.71) BS01 ZN ? GO:0015752 ... P39265 10064713
    15530 1gue:A (2.27) BS01 RET ? GO:0005216 ... P42196 11937052
    15531 1guf:A (2.25) BS01 NDP 1.3.1.104 GO:0005739 ... Q8WZM3 12614607
    15532 1guf:B (2.25) BS01 NDP 1.3.1.104 GO:0005739 ... Q8WZM3 12614607
    15533 1gug:A (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    15534 1gug:A (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    15535 1gug:B (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    15536 1gug:B (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    15537 1gug:C (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    15538 1gug:C (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    15539 1gug:D (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    15540 1gug:D (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    15541 1gug:E (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    15542 1gug:E (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    15543 1gug:F (1.6) BS01 WO4 ? GO:0015689 ... P08854 11836258
    15544 1gug:F (1.6) BS02 WO4 ? GO:0015689 ... P08854 11836258
    15545 1guh:A (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    15546 1guh:A (2.6) BS02 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    15547 1guh:B (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    15548 1guh:B (2.6) BS02 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    15549 1guh:C (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    15550 1guh:C (2.6) BS02 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    15551 1guh:D (2.6) BS01 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    15552 1guh:D (2.6) BS02 GSB 1.11.1.-
    2.5.1.18
    5.3.3.-
    GO:0004364 ... P08263 8331657
    15553 1gui:A (1.9) BS01 BGC ? GO:0016798 ... Q9WXN1 12079353
    15554 1gui:A (1.9) BS02 BGC ? GO:0016798 ... Q9WXN1 12079353
    15555 1gui:A (1.9) BS03 BGC ? GO:0016798 ... Q9WXN1 12079353
    15556 1gui:A (1.9) BS04 CA ? GO:0016798 ... Q9WXN1 12079353
    15557 1guj:B (1.62) BS01 peptide ? GO:0005179 ... P01308 12051853
    15558 1guj:D (1.62) BS01 peptide ? GO:0005179 ... P01308 12051853
    15559 1gul:A (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15560 1gul:A (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15561 1gul:B (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15562 1gul:B (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15563 1gul:C (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15564 1gul:C (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15565 1gul:D (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15566 1gul:D (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15567 1gul:E (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15568 1gul:E (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15569 1gul:F (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15570 1gul:F (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15571 1gul:G (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15572 1gul:G (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15573 1gul:H (2.7) BS01 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15574 1gul:H (2.7) BS02 IBG 2.5.1.18 GO:0004364 ... O15217 10329152
    15575 1gun:A (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    15576 1gun:A (1.83) BS02 MOO ? GO:0015689 ... P08854 11836258
    15577 1gun:B (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    15578 1gun:C (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    15579 1gun:C (1.83) BS02 MOO ? GO:0015689 ... P08854 11836258
    15580 1gun:D (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    15581 1gun:D (1.83) BS02 MOO ? GO:0015689 ... P08854 11836258
    15582 1gun:E (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    15583 1gun:F (1.83) BS01 MOO ? GO:0015689 ... P08854 11836258
    15584 1gun:F (1.83) BS02 MOO ? GO:0015689 ... P08854 11836258
    15585 1guo:A (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    15586 1guo:A (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    15587 1guo:B (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    15588 1guo:B (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    15589 1guo:C (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    15590 1guo:C (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    15591 1guo:D (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    15592 1guo:D (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    15593 1guo:E (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    15594 1guo:E (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    15595 1guo:F (2.5) BS01 MOO ? GO:0015689 ... P08854 11836258
    15596 1guo:F (2.5) BS02 MOO ? GO:0015689 ... P08854 11836258
    15597 1gup:A (1.8) BS01 GDU 2.7.7.12 GO:0004335 ... P09148 9063869
    15598 1gup:A (1.8) BS02 ZN 2.7.7.12 GO:0004335 ... P09148 9063869
    15599 1gup:A (1.8) BS03 FE 2.7.7.12 GO:0004335 ... P09148 9063869
    15600 1gup:A (1.8) BS04 GDU 2.7.7.12 GO:0004335 ... P09148 9063869

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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