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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    13801 1g8k:G (1.64) BS02 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13802 1g8k:G (1.64) BS03 MGD 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13803 1g8k:G (1.64) BS04 F3S 1.20.9.1 GO:0016491 ... Q7SIF4 11250197
    13804 1g8k:H (1.64) BS01 FES 1.20.9.1 GO:0005886 ... Q7SIF3 11250197
    13805 1g8m:A (1.75) BS01 G 2.1.2.3
    3.5.4.10
    GO:0003824 ... P31335 11323713
    13806 1g8o:A (2.3) BS01 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    13807 1g8o:A (2.3) BS02 U5P 2.4.1.87 GO:0005975 ... P14769 11179209
    13808 1g8s:A (1.6) BS01 MET 2.1.1.- GO:0000494 ... Q58108 N/A
    13809 1g8t:A (1.1) BS01 SO4 3.1.30.2 GO:0003676 ... P13717 10771425
    13810 1g8t:B (1.1) BS01 SO4 3.1.30.2 GO:0003676 ... P13717 10771425
    13811 1g8w:A (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    13812 1g8w:A (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    13813 1g8w:B (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    13814 1g8w:B (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    13815 1g8w:C (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    13816 1g8w:C (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    13817 1g8w:D (2.8) BS01 MN ? GO:0005537 ... P05087 11491289
    13818 1g8w:D (2.8) BS02 CA ? GO:0005537 ... P05087 11491289
    13819 1g8x:A (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799
    11226153
    13820 1g8x:A (2.8) BS02 ADP ? GO:0003774 ... P05095
    P08799
    11226153
    13821 1g8x:B (2.8) BS01 MG ? GO:0003774 ... P05095
    P08799
    11226153
    13822 1g8x:B (2.8) BS02 ADP ? GO:0003774 ... P05095
    P08799
    11226153
    13823 1g8z:D (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    13824 1g8z:F (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    13825 1g8z:G (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    13826 1g8z:H (2.0) BS01 GAL ? GO:0005515 ... P01556 11447291
    13827 1g93:A (2.5) BS01 GAL 2.4.1.87 GO:0005975 ... P14769 11179209
    13828 1g93:A (2.5) BS02 MN 2.4.1.87 GO:0005975 ... P14769 11179209
    13829 1g93:A (2.5) BS03 UPG 2.4.1.87 GO:0005975 ... P14769 11179209
    13830 1g94:A (1.74) BS01 GLC 3.2.1.1 GO:0003824 ... P29957 11914073
    13831 1g94:A (1.74) BS02 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    13832 1g94:A (1.74) BS03 GLC 3.2.1.1 GO:0003824 ... P29957 11914073
    13833 1g94:A (1.74) BS04 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    13834 1g94:A (1.74) BS05 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    13835 1g97:A (1.96) BS01 MG 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11124906
    13836 1g97:A (1.96) BS02 UD1 2.3.1.157
    2.7.7.23
    GO:0000287 ... Q97R46 11124906
    13837 1g98:A (1.9) BS01 PA5 5.3.1.9 GO:0004347 ... Q9N1E2 11327814 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    13838 1g98:B (1.9) BS01 PA5 5.3.1.9 GO:0004347 ... Q9N1E2 11327814 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    13839 1g99:A (2.5) BS01 ADP 2.7.2.1 GO:0000287 ... P38502 11133963
    13840 1g99:B (2.5) BS01 ADP 2.7.2.1 GO:0000287 ... P38502 11133963
    13841 1g9a:A (2.1) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    13842 1g9a:A (2.1) BS02 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    13843 1g9a:A (2.1) BS03 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    13844 1g9b:A (2.0) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    13845 1g9b:A (2.0) BS02 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    13846 1g9b:A (2.0) BS03 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    13847 1g9c:A (2.35) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    13848 1g9c:A (2.35) BS02 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    13849 1g9c:A (2.35) BS03 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    PDBbind: -logKd/Ki=5.30, IC50=5uM
    13850 1g9d:A (2.2) BS01 ZN 3.4.24.69 GO:0004222 ... P10844 12146945
    13851 1g9d:A (2.2) BS02 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    13852 1g9d:A (2.2) BS03 BAB 3.4.24.69 GO:0004222 ... P10844 12146945 MOAD: ic50~7.5uM
    13853 1g9f:A (2.5) BS01 GAL ? GO:0030246 ... P05046 11491289
    13854 1g9f:A (2.5) BS02 MN ? GO:0030246 ... P05046 11491289
    13855 1g9f:A (2.5) BS03 CA ? GO:0030246 ... P05046 11491289
    13856 1g9g:A (1.9) BS01 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    13857 1g9g:A (1.9) BS02 MG 3.2.1.4 GO:0004553 ... P37698 18035374
    13858 1g9h:A (1.8) BS01 BGC 3.2.1.1 GO:0003824 ... P29957 11914073
    13859 1g9h:A (1.8) BS02 DAF 3.2.1.1 GO:0003824 ... P29957 11914073
    13860 1g9h:A (1.8) BS03 CA 3.2.1.1 GO:0003824 ... P29957 11914073
    13861 1g9i:E (2.2) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 11257512
    13862 1g9i:E (2.2) BS02 CA 3.4.21.4 GO:0004175 ... P00760 11257512
    13863 1g9j:A (1.9) BS01 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    13864 1g9j:A (1.9) BS02 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    13865 1g9j:A (1.9) BS03 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    13866 1g9j:A (1.9) BS04 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    13867 1g9j:A (1.9) BS05 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    13868 1g9j:A (1.9) BS06 BGC 3.2.1.4 GO:0004553 ... P37698 18035374
    13869 1g9j:A (1.9) BS07 SGC 3.2.1.4 GO:0004553 ... P37698 18035374
    13870 1g9j:A (1.9) BS08 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    13871 1g9j:A (1.9) BS09 CA 3.2.1.4 GO:0004553 ... P37698 18035374
    13872 1g9k:A (1.96) BS01 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    13873 1g9k:A (1.96) BS02 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    13874 1g9k:A (1.96) BS03 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    13875 1g9k:A (1.96) BS04 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    13876 1g9k:A (1.96) BS05 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    13877 1g9k:A (1.96) BS06 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    13878 1g9k:A (1.96) BS07 CA 3.4.24.40 GO:0004222 ... O69771 12577270
    13879 1g9k:A (1.96) BS08 ZN 3.4.24.40 GO:0004222 ... O69771 12577270
    13880 1g9q:A (2.3) BS01 APR 3.6.1.13 GO:0000287 ... Q93K97 11323725
    13881 1g9q:A (2.3) BS02 APR 3.6.1.13 GO:0000287 ... Q93K97 11323725
    13882 1g9q:B (2.3) BS01 APR 3.6.1.13 GO:0000287 ... Q93K97 11323725
    13883 1g9q:B (2.3) BS02 APR 3.6.1.13 GO:0000287 ... Q93K97 11323725
    13884 1g9r:A (2.0) BS01 MN 2.4.1.- GO:0016740 ... Q93EK7 11175908
    13885 1g9r:A (2.0) BS02 UPF 2.4.1.- GO:0016740 ... Q93EK7 11175908 MOAD: Ki=2uM
    PDBbind: -logKd/Ki=5.70, Ki=2uM
    13886 1g9s:A (2.8) BS01 IMP 2.4.2.8 GO:0000166 ... P0A9M2 12070315 PDBbind: -logKd/Ki=3.61, Ki=247uM
    13887 1g9s:B (2.8) BS01 N 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    13888 1g9t:A (2.8) BS01 5GP 2.4.2.8 GO:0000166 ... P0A9M2 12070315 PDBbind: -logKd/Ki=3.28, Ki=526uM
    13889 1g9t:B (2.8) BS01 N 2.4.2.8 GO:0000166 ... P0A9M2 12070315
    13890 1g9u:A (2.35) BS01 CA ? GO:0005576 ... P17778 11575934
    13891 1g9v:A (1.85) BS01 HEM ? GO:0004601 ... P69905 11316875
    13892 1g9v:A (1.85) BS02 RQ3 ? GO:0004601 ... P69905 11316875
    13893 1g9v:A (1.85) BS03 RQ3 ? GO:0004601 ... P69905 11316875
    13894 1g9v:B (1.85) BS01 RQ3 ? GO:0004601 ... P68871 11316875
    13895 1g9v:B (1.85) BS02 HEM ? GO:0004601 ... P68871 11316875
    13896 1g9v:C (1.85) BS01 RQ3 ? GO:0004601 ... P69905 11316875
    13897 1g9v:C (1.85) BS02 HEM ? GO:0004601 ... P69905 11316875
    13898 1g9v:C (1.85) BS03 RQ3 ? GO:0004601 ... P69905 11316875
    13899 1g9v:D (1.85) BS01 RQ3 ? GO:0004601 ... P68871 11316875
    13900 1g9v:D (1.85) BS02 HEM ? GO:0004601 ... P68871 11316875
    13901 1g9x:A (2.6) BS01 ADP ? GO:0005524 ... Q58663 12554933
    13902 1g9x:B (2.6) BS01 MG ? GO:0005524 ... Q58663 12554933
    13903 1g9x:B (2.6) BS02 ADP ? GO:0005524 ... Q58663 12554933
    13904 1g9x:C (2.6) BS01 ADP ? GO:0005524 ... Q58663 12554933
    13905 1g9y:A (2.05) BS01 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13906 1g9y:A (2.05) BS02 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13907 1g9y:B (2.05) BS01 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13908 1g9y:B (2.05) BS02 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13909 1g9y:B (2.05) BS03 CA 3.1.-.- GO:0004519 ... P05725 11276249
    13910 1g9z:A (1.8) BS01 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13911 1g9z:A (1.8) BS02 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13912 1g9z:A (1.8) BS03 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13913 1g9z:B (1.8) BS01 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13914 1g9z:B (1.8) BS02 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13915 1g9z:B (1.8) BS03 dna 3.1.-.- GO:0004519 ... P05725 11276249
    13916 1ga0:A (1.6) BS01 DVR 3.5.2.6 GO:0008800 ... Q59401 11371184
    13917 1ga1:A (1.4) BS01 peptide 3.4.21.100 GO:0004252 ... P42790 11173470
    13918 1ga1:A (1.4) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11173470
    13919 1ga2:A (1.7) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    13920 1ga2:A (1.7) BS02 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    13921 1ga2:A (1.7) BS03 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    13922 1ga2:A (1.7) BS04 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    13923 1ga2:A (1.7) BS05 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    13924 1ga2:A (1.7) BS06 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    13925 1ga2:B (1.7) BS01 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    13926 1ga2:B (1.7) BS02 BGC 3.2.1.4 GO:0004553 ... P37700 12837787
    13927 1ga2:B (1.7) BS03 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    13928 1ga2:B (1.7) BS04 CA 3.2.1.4 GO:0004553 ... P37700 12837787
    13929 1ga4:A (1.4) BS01 peptide 3.4.21.100 GO:0004252 ... P42790 11323721
    13930 1ga4:A (1.4) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11323721
    13931 1ga5:A (2.4) BS01 dna ? GO:0003700 ... P20393 11669620
    13932 1ga5:A (2.4) BS02 dna ? GO:0003700 ... P20393 11669620
    13933 1ga5:A (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    13934 1ga5:A (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    13935 1ga5:B (2.4) BS01 dna ? GO:0003700 ... P20393 11669620
    13936 1ga5:B (2.4) BS02 dna ? GO:0003700 ... P20393 11669620
    13937 1ga5:B (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    13938 1ga5:B (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    13939 1ga5:E (2.4) BS01 dna ? GO:0003700 ... P20393 11669620
    13940 1ga5:E (2.4) BS02 dna ? GO:0003700 ... P20393 11669620
    13941 1ga5:E (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    13942 1ga5:E (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    13943 1ga5:F (2.4) BS01 dna ? GO:0003700 ... P20393 11669620
    13944 1ga5:F (2.4) BS02 dna ? GO:0003700 ... P20393 11669620
    13945 1ga5:F (2.4) BS03 ZN ? GO:0003700 ... P20393 11669620
    13946 1ga5:F (2.4) BS04 ZN ? GO:0003700 ... P20393 11669620
    13947 1ga6:A (1.0) BS01 peptide 3.4.21.100 GO:0004252 ... P42790 11323721
    13948 1ga6:A (1.0) BS02 CA 3.4.21.100 GO:0004252 ... P42790 11323721
    13949 1ga8:A (2.0) BS01 Z9D 2.4.1.44 GO:0016740 ... Q93EK7 11175908
    13950 1ga8:A (2.0) BS02 MN 2.4.1.44 GO:0016740 ... Q93EK7 11175908
    13951 1ga8:A (2.0) BS03 UPF 2.4.1.44 GO:0016740 ... Q93EK7 11175908 MOAD: Ki=2uM
    13952 1ga9:A (2.1) BS01 ETP 3.5.2.6 GO:0008800 ... P00811 11410378 PDBbind: -logKd/Ki=7.08, Ki=83nM
    BindingDB: Ki=80nM
    13953 1ga9:B (2.1) BS01 ETP 3.5.2.6 GO:0008800 ... P00811 11410378 BindingDB: Ki=80nM
    13954 1gad:O (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 8636984
    13955 1gad:P (1.8) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 8636984
    13956 1gae:O (2.17) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 8636984
    13957 1gae:P (2.17) BS01 NAD 1.2.1.12 GO:0000166 ... P0A9B2 8636984
    13958 1gaf:L (1.95) BS01 NPE ? GO:0002250 ... P01834 8599084 PDBbind: -logKd/Ki=8.00, Kd=10nM
    13959 1gag:A (2.7) BS01 peptide 2.7.10.1 GO:0004672 ... P06213 11135668
    13960 1gag:A (2.7) BS02 MG 2.7.10.1 GO:0004672 ... P06213 11135668
    13961 1gag:A (2.7) BS03 112 2.7.10.1 GO:0004672 ... P06213 11135668
    13962 1gah:A (2.0) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13963 1gah:A (2.0) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13964 1gah:A (2.0) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13965 1gah:A (2.0) BS04 GLC 3.2.1.3 GO:0004339 ... P69327 8679589
    13966 1gah:A (2.0) BS05 AC1 3.2.1.3 GO:0004339 ... P69327 8679589
    13967 1gah:A (2.0) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13968 1gah:A (2.0) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13969 1gah:A (2.0) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13970 1gah:A (2.0) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13971 1gah:A (2.0) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13972 1gah:A (2.0) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13973 1gai:A (1.7) BS01 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13974 1gai:A (1.7) BS02 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13975 1gai:A (1.7) BS03 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13976 1gai:A (1.7) BS04 GLC 3.2.1.3 GO:0004339 ... P69327 8679589
    13977 1gai:A (1.7) BS05 RY7 3.2.1.3 GO:0004339 ... P69327 8679589
    13978 1gai:A (1.7) BS06 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13979 1gai:A (1.7) BS07 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13980 1gai:A (1.7) BS08 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13981 1gai:A (1.7) BS09 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13982 1gai:A (1.7) BS10 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13983 1gai:A (1.7) BS11 MAN 3.2.1.3 GO:0004339 ... P69327 8679589
    13984 1gal:A (2.3) BS01 FAD 1.1.3.4 GO:0005576 ... P13006 8421298
    13985 1gan:A (2.23) BS01 GAL ? GO:0005576 ... P56217 10861929
    13986 1gan:B (2.23) BS01 GAL ? GO:0005576 ... P56217 10861929
    13987 1gao:A (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    13988 1gao:A (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    13989 1gao:B (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    13990 1gao:B (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    13991 1gao:C (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    13992 1gao:C (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    13993 1gao:D (2.2) BS01 SF4 ? GO:0003677 ... P00214 11704670
    13994 1gao:D (2.2) BS02 F3S ? GO:0003677 ... P00214 11704670
    13995 1gaq:A (2.59) BS01 FAD 1.18.1.2 GO:0016491 ... Q9SLP6 11175898
    13996 1gaq:B (2.59) BS01 FES ? GO:0009055 ... P27787 11175898
    13997 1gaq:C (2.59) BS01 FAD 1.18.1.2 GO:0016491 ... Q9SLP6 11175898
    13998 1gar:A (1.96) BS01 U89 2.1.2.2 GO:0003824 ... P08179 7776369 MOAD: Ki=100pM
    PDBbind: -logKd/Ki=10.00, Ki=100pM
    13999 1gar:B (1.96) BS01 U89 2.1.2.2 GO:0003824 ... P08179 7776369 MOAD: Ki=100pM
    14000 1gat:A (-1.00) BS01 dna ? GO:0003700 ... P17678 8332909

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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