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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    814801 8y1m:B (1.8) BS06 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    814802 8y1m:B (1.8) BS07 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    814803 8y1m:B (1.8) BS08 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    814804 8y1m:B (1.8) BS09 CA 3.2.1.8 GO:0005576 ... P07528 38565938
    814805 8y2h:B (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814806 8y2h:B (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814807 8y2h:B (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814808 8y2h:F (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814809 8y2h:F (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814810 8y2h:F (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814811 8y2h:G (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814812 8y2h:G (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814813 8y2h:G (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814814 8y2h:H (3.3) BS01 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814815 8y2h:H (3.3) BS02 peptide 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814816 8y2h:H (3.3) BS03 ATP 1.2.1.41
    2.7.2.11    		 GO:0004349 ... P54887 38740943
    814817 8y2s:A (2.0) BS01 A1LXW 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    814818 8y2s:A (2.0) BS02 FAD 1.14.13.2 GO:0000166 ... A0A233TK29 N/A
    814819 8y33:A (2.9) BS01 V8U N/A GO:0015979 ... N/A 38552148
    814820 8y36:1 (2.65) BS01 rna N/A GO:0005737 ... P66232 38992047
    814821 8y36:2 (2.65) BS01 rna N/A GO:0005840 ... P66254 38992047
    814822 8y36:3 (2.65) BS01 rna N/A GO:0003735 ... P66277 38992047
    814823 8y36:4 (2.65) BS01 rna N/A GO:0005737 ... P66300 38992047
    814824 8y36:C (2.65) BS01 rna N/A GO:0002181 ... P60433 38992047
    814825 8y36:D (2.65) BS01 rna N/A GO:0003735 ... P60450 38992047
    814826 8y36:E (2.65) BS01 rna N/A GO:0003735 ... P61060 38992047
    814827 8y36:F (2.65) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    814828 8y36:F (2.65) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    814829 8y36:G (2.65) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    814830 8y36:H (2.65) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    814831 8y36:I (2.65) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    814832 8y36:J (2.65) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    814833 8y36:K (2.65) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    814834 8y36:K (2.65) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    814835 8y36:L (2.65) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    814836 8y36:M (2.65) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    814837 8y36:M (2.65) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    814838 8y36:N (2.65) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    814839 8y36:O (2.65) BS01 rna N/A GO:0000027 ... P66109 38992047
    814840 8y36:P (2.65) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    814841 8y36:Q (2.65) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    814842 8y36:R (2.65) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    814843 8y36:S (2.65) BS01 rna N/A GO:0005840 ... P60736 38992047
    814844 8y36:V (2.65) BS01 rna N/A GO:0005840 ... P66154 38992047
    814845 8y36:W (2.65) BS01 rna N/A GO:0005840 ... P66174 38992047
    814846 8y36:X (2.65) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    814847 8y36:X (2.65) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    814848 8y37:1 (2.53) BS01 rna N/A GO:0005737 ... P66232 38992047
    814849 8y37:2 (2.53) BS01 rna N/A GO:0005840 ... P66254 38992047
    814850 8y37:3 (2.53) BS01 rna N/A GO:0003735 ... P66277 38992047
    814851 8y37:4 (2.53) BS01 rna N/A GO:0005737 ... P66300 38992047
    814852 8y37:C (2.53) BS01 rna N/A GO:0002181 ... P60433 38992047
    814853 8y37:D (2.53) BS01 rna N/A GO:0003735 ... P60450 38992047
    814854 8y37:E (2.53) BS01 rna N/A GO:0003735 ... P61060 38992047
    814855 8y37:F (2.53) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    814856 8y37:F (2.53) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    814857 8y37:G (2.53) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    814858 8y37:H (2.53) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    814859 8y37:I (2.53) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    814860 8y37:J (2.53) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    814861 8y37:K (2.53) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    814862 8y37:K (2.53) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    814863 8y37:L (2.53) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    814864 8y37:M (2.53) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    814865 8y37:M (2.53) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    814866 8y37:N (2.53) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    814867 8y37:O (2.53) BS01 rna N/A GO:0000027 ... P66109 38992047
    814868 8y37:P (2.53) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    814869 8y37:Q (2.53) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    814870 8y37:R (2.53) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    814871 8y37:S (2.53) BS01 rna N/A GO:0005840 ... P60736 38992047
    814872 8y37:V (2.53) BS01 rna N/A GO:0005840 ... P66154 38992047
    814873 8y37:W (2.53) BS01 rna N/A GO:0005840 ... P66174 38992047
    814874 8y37:X (2.53) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    814875 8y37:X (2.53) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    814876 8y38:1 (2.58) BS01 rna N/A GO:0005737 ... P66232 38992047
    814877 8y38:2 (2.58) BS01 rna N/A GO:0005840 ... P66254 38992047
    814878 8y38:3 (2.58) BS01 rna N/A GO:0003735 ... P66277 38992047
    814879 8y38:4 (2.58) BS01 rna N/A GO:0005737 ... P66300 38992047
    814880 8y38:C (2.58) BS01 rna N/A GO:0002181 ... P60433 38992047
    814881 8y38:D (2.58) BS01 rna N/A GO:0003735 ... P60450 38992047
    814882 8y38:E (2.58) BS01 rna N/A GO:0003735 ... P61060 38992047
    814883 8y38:F (2.58) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    814884 8y38:F (2.58) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    814885 8y38:G (2.58) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    814886 8y38:H (2.58) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    814887 8y38:I (2.58) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    814888 8y38:I (2.58) BS02 rna N/A GO:0003735 ... Q7A081 38992047
    814889 8y38:J (2.58) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    814890 8y38:K (2.58) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    814891 8y38:K (2.58) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    814892 8y38:L (2.58) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    814893 8y38:M (2.58) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    814894 8y38:M (2.58) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    814895 8y38:N (2.58) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    814896 8y38:O (2.58) BS01 rna N/A GO:0000027 ... P66109 38992047
    814897 8y38:P (2.58) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    814898 8y38:Q (2.58) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    814899 8y38:R (2.58) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    814900 8y38:S (2.58) BS01 rna N/A GO:0005840 ... P60736 38992047
    814901 8y38:V (2.58) BS01 rna N/A GO:0005840 ... P66154 38992047
    814902 8y38:W (2.58) BS01 rna N/A GO:0005840 ... P66174 38992047
    814903 8y38:X (2.58) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    814904 8y38:X (2.58) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    814905 8y38:b (2.58) BS01 rna N/A GO:0003735 ... A0A2X2M020 38992047
    814906 8y38:c (2.58) BS01 rna N/A GO:0003729 ... P66554 38992047
    814907 8y38:d (2.58) BS01 rna N/A GO:0003735 ... P66564 38992047
    814908 8y38:e (2.58) BS01 rna N/A GO:0005737 ... P66580 38992047
    814909 8y38:f (2.58) BS01 rna N/A GO:0003735 ... P66596 38992047
    814910 8y38:g (2.58) BS01 rna N/A GO:0000028 ... P66617 38992047
    814911 8y38:h (2.58) BS01 rna N/A GO:0003735 ... P66631 38992047
    814912 8y38:i (2.58) BS01 rna N/A GO:0003723 ... P66647 38992047
    814913 8y38:j (2.58) BS01 rna N/A GO:0000049 ... P66335 38992047
    814914 8y38:k (2.58) BS01 rna N/A GO:0005840 ... P66358 38992047
    814915 8y38:m (2.58) BS01 rna N/A GO:0000049 ... P66389 38992047
    814916 8y38:n (2.58) BS01 rna N/A GO:0003735 ... P66413 38992047
    814917 8y38:o (2.58) BS01 rna N/A GO:0005737 ... Q7A116 38992047
    814918 8y38:p (2.58) BS01 rna N/A GO:0003735 ... P66441 38992047
    814919 8y38:q (2.58) BS01 rna N/A GO:0003735 ... Q8NVB4 38992047
    814920 8y38:r (2.58) BS01 rna N/A GO:0003735 ... P66469 38992047
    814921 8y38:t (2.58) BS01 rna N/A GO:0005829 ... Q7A0R9 38992047
    814922 8y39:1 (3.6) BS01 rna N/A GO:0005737 ... P66232 38992047
    814923 8y39:2 (3.6) BS01 rna N/A GO:0005840 ... P66254 38992047
    814924 8y39:3 (3.6) BS01 rna N/A GO:0003735 ... P66277 38992047
    814925 8y39:4 (3.6) BS01 rna N/A GO:0005737 ... P66300 38992047
    814926 8y39:C (3.6) BS01 rna N/A GO:0002181 ... P60433 38992047
    814927 8y39:D (3.6) BS01 rna N/A GO:0003735 ... P60450 38992047
    814928 8y39:E (3.6) BS01 rna N/A GO:0003735 ... P61060 38992047
    814929 8y39:F (3.6) BS01 rna N/A GO:0000049 ... Q7A083 38992047
    814930 8y39:F (3.6) BS02 rna N/A GO:0000049 ... Q7A083 38992047
    814931 8y39:G (3.6) BS01 rna N/A GO:0002181 ... Q7A084 38992047
    814932 8y39:H (3.6) BS01 rna N/A GO:0003729 ... Q7A089 38992047
    814933 8y39:I (3.6) BS01 rna N/A GO:0003735 ... Q7A081 38992047
    814934 8y39:I (3.6) BS02 rna N/A GO:0003735 ... Q7A081 38992047
    814935 8y39:J (3.6) BS01 rna N/A GO:0003735 ... P0A0F7 38992047
    814936 8y39:K (3.6) BS01 rna N/A GO:0000049 ... Q7A080 38992047
    814937 8y39:K (3.6) BS02 rna N/A GO:0000049 ... Q7A080 38992047
    814938 8y39:L (3.6) BS01 rna N/A GO:0003735 ... Q7A087 38992047
    814939 8y39:M (3.6) BS01 rna N/A GO:0005737 ... Q7A085 38992047
    814940 8y39:M (3.6) BS02 rna N/A GO:0005737 ... Q7A085 38992047
    814941 8y39:N (3.6) BS01 rna N/A GO:0003735 ... Q8NX05 38992047
    814942 8y39:O (3.6) BS01 rna N/A GO:0000027 ... P66109 38992047
    814943 8y39:P (3.6) BS01 rna N/A GO:0003735 ... Q7A0Q2 38992047
    814944 8y39:Q (3.6) BS01 rna N/A GO:0003735 ... Q7A079 38992047
    814945 8y39:R (3.6) BS01 rna N/A GO:0000027 ... Q7A078 38992047
    814946 8y39:S (3.6) BS01 rna N/A GO:0005840 ... P60736 38992047
    814947 8y39:V (3.6) BS01 rna N/A GO:0005840 ... P66154 38992047
    814948 8y39:W (3.6) BS01 rna N/A GO:0005840 ... P66174 38992047
    814949 8y39:X (3.6) BS01 rna N/A GO:0005840 ... P0A0G1 38992047
    814950 8y39:X (3.6) BS02 rna N/A GO:0005840 ... P0A0G1 38992047
    814951 8y39:b (3.6) BS01 rna N/A GO:0003735 ... A0A2X2M020 38992047
    814952 8y39:c (3.6) BS01 rna N/A GO:0003729 ... P66554 38992047
    814953 8y39:d (3.6) BS01 rna N/A GO:0003735 ... P66564 38992047
    814954 8y39:e (3.6) BS01 rna N/A GO:0005737 ... P66580 38992047
    814955 8y39:f (3.6) BS01 rna N/A GO:0003735 ... P66596 38992047
    814956 8y39:g (3.6) BS01 rna N/A GO:0000028 ... P66617 38992047
    814957 8y39:h (3.6) BS01 rna N/A GO:0003735 ... P66631 38992047
    814958 8y39:i (3.6) BS01 rna N/A GO:0003723 ... P66647 38992047
    814959 8y39:j (3.6) BS01 rna N/A GO:0000049 ... P66335 38992047
    814960 8y39:k (3.6) BS01 rna N/A GO:0005840 ... P66358 38992047
    814961 8y39:m (3.6) BS01 rna N/A GO:0000049 ... P66389 38992047
    814962 8y39:n (3.6) BS01 rna N/A GO:0003735 ... P66413 38992047
    814963 8y39:o (3.6) BS01 rna N/A GO:0005737 ... Q7A116 38992047
    814964 8y39:p (3.6) BS01 rna N/A GO:0003735 ... P66441 38992047
    814965 8y39:q (3.6) BS01 rna N/A GO:0003735 ... Q8NVB4 38992047
    814966 8y39:r (3.6) BS01 rna N/A GO:0003735 ... P66469 38992047
    814967 8y39:t (3.6) BS01 rna N/A GO:0005829 ... Q7A0R9 38992047
    814968 8y3x:A (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    814969 8y3x:A (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    814970 8y3x:B (3.11) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    814971 8y3x:B (3.11) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    814972 8y4j:A (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    814973 8y4j:C (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    814974 8y4j:D (1.51) BS01 A1LXD N/A GO:0016491 ... A0AAE4G800 38918500
    814975 8y4u:A (2.4) BS01 FE ? GO:0016491 ... Q6ES21 38401306
    814976 8y65:A (3.51) BS01 URC N/A GO:0005351 ... Q9NRM0 38866775
    814977 8y66:A (3.28) BS01 AGI N/A GO:0005351 ... Q9NRM0 38866775
    814978 8y6b:A (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    814979 8y6b:A (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    814980 8y6b:A (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    814981 8y6b:B (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    814982 8y6b:B (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    814983 8y6b:B (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    814984 8y6b:C (3.49) BS01 CA ? GO:0004222 ... Q9P0K1 N/A
    814985 8y6b:C (3.49) BS02 CA ? GO:0004222 ... Q9P0K1 N/A
    814986 8y6b:C (3.49) BS03 CA ? GO:0004222 ... Q9P0K1 N/A
    814987 8y6b:D (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    814988 8y6b:E (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    814989 8y6b:F (3.49) BS01 CA ? GO:0005102 ... O95970 N/A
    814990 8y6h:A (2.49) BS01 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814991 8y6h:A (2.49) BS02 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814992 8y6h:A (2.49) BS03 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814993 8y6i:A (2.54) BS01 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814994 8y6i:A (2.54) BS02 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814995 8y6i:A (2.54) BS03 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814996 8y6i:A (2.54) BS04 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814997 8y6i:A (2.54) BS05 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814998 8y6i:A (2.54) BS06 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    814999 8y6i:A (2.54) BS07 CLR 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    815000 8y6i:A (2.54) BS08 R0Z 7.6.2.1
    7.6.2.2    		 GO:0000086 ... P08183 38579618
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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