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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    812401 8x15:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    812402 8x15:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812403 8x15:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812404 8x15:J (3.2) BS01 dna ? GO:0000122 ... Q15906 38331872
    812405 8x15:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812406 8x15:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812407 8x15:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812408 8x15:O (3.2) BS02 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812409 8x15:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812410 8x15:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812411 8x15:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812412 8x15:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    812413 8x15:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    812414 8x15:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    812415 8x16:R (3.29) BS01 Q8L ? GO:0001609 ... P0DMS8 38627384
    812416 8x17:R (3.19) BS01 XS0 ? GO:0001609 ... P0DMS8 38627384
    812417 8x19:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    812418 8x19:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    812419 8x19:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    812420 8x19:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    812421 8x19:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    812422 8x19:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    812423 8x19:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    812424 8x19:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    812425 8x19:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    812426 8x19:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    812427 8x19:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    812428 8x19:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    812429 8x19:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    812430 8x19:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    812431 8x19:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    812432 8x19:H (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    812433 8x19:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812434 8x19:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812435 8x19:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812436 8x19:I (3.2) BS04 BEF 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812437 8x19:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812438 8x19:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812439 8x19:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812440 8x19:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812441 8x19:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812442 8x19:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812443 8x19:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    812444 8x19:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    812445 8x19:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    812446 8x1a:B (1.604) BS01 G6P ? GO:0015888 ... A0A0H3AFK0 38704889
    812447 8x1c:A (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    812448 8x1c:A (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    812449 8x1c:B (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    812450 8x1c:B (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    812451 8x1c:C (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    812452 8x1c:C (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    812453 8x1c:D (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    812454 8x1c:D (3.2) BS02 dna ? GO:0000781 ... P62805 38331872
    812455 8x1c:E (3.2) BS01 dna ? GO:0000786 ... Q93077 38331872
    812456 8x1c:E (3.2) BS02 dna ? GO:0000786 ... Q93077 38331872
    812457 8x1c:F (3.2) BS01 dna ? GO:0000786 ... P62807 38331872
    812458 8x1c:F (3.2) BS02 dna ? GO:0000786 ... P62807 38331872
    812459 8x1c:G (3.2) BS01 dna ? GO:0000786 ... P68431 38331872
    812460 8x1c:G (3.2) BS02 dna ? GO:0000786 ... P68431 38331872
    812461 8x1c:H (3.2) BS01 dna ? GO:0000781 ... P62805 38331872
    812462 8x1c:I (3.2) BS01 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812463 8x1c:I (3.2) BS02 dna 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812464 8x1c:I (3.2) BS03 ADP 3.6.4.- GO:0000786 ... Q6ZRS2 38331872
    812465 8x1c:K (3.2) BS01 ATP ? GO:0000786 ... Q9GZN1 38331872
    812466 8x1c:L (3.2) BS01 dna ? GO:0000786 ... O43257 38331872
    812467 8x1c:M (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812468 8x1c:N (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812469 8x1c:O (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812470 8x1c:P (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812471 8x1c:Q (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y265 38331872
    812472 8x1c:R (3.2) BS01 ADP 3.6.4.12 GO:0000492 ... Q9Y230 38331872
    812473 8x1c:S (3.2) BS01 dna 3.6.4.- GO:0000079 ... P60709 38331872
    812474 8x1c:T (3.2) BS01 ATP ? GO:0000723 ... O96019 38331872
    812475 8x1c:U (3.2) BS01 ATP 3.6.4.- GO:0000079 ... P60709 38331872
    812476 8x1c:V (3.2) BS01 dna ? GO:0000122 ... Q9NPF5 38331872
    812477 8x1c:W (3.2) BS01 dna ? GO:0000278 ... O95619 38331872
    812478 8x1f:A (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    812479 8x1f:B (2.3) BS01 PLP ? GO:0003824 ... Q0C8G1 N/A
    812480 8x1n:A (3.31) BS01 ZN ? GO:0005615 ... P02771 38678117
    812481 8x2a:A (1.3) BS01 LTJ 2.7.10.2 GO:0004672 ... P51813 N/A
    812482 8x2h:A (2.9) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    812483 8x2i:A (2.5) BS01 ZN 2.4.1.-
    3.4.22.-    		 GO:0005576 ... T0D3N5 N/A
    812484 8x2j:A (2.7) BS01 HEC ? GO:0016020 ... A9WEV2 38299372
    812485 8x2j:A (2.7) BS02 HEC ? GO:0016020 ... A9WEV2 38299372
    812486 8x2j:A (2.7) BS03 HEC ? GO:0016020 ... A9WEV2 38299372
    812487 8x2j:A (2.7) BS04 HEC ? GO:0016020 ... A9WEV2 38299372
    812488 8x2j:A (2.7) BS05 HEC ? GO:0016020 ... A9WEV2 38299372
    812489 8x2j:C (2.7) BS01 HEC ? GO:0005886 ... A9WEV4 38299372
    812490 8x2j:C (2.7) BS02 JLQ ? GO:0005886 ... A9WEV4 38299372
    812491 8x2j:C (2.7) BS03 HQO ? GO:0005886 ... A9WEV4 38299372
    812492 8x2j:C (2.7) BS04 JL3 ? GO:0005886 ... A9WEV4 38299372
    812493 8x2j:C (2.7) BS05 JM9 ? GO:0005886 ... A9WEV4 38299372
    812494 8x2j:D (2.7) BS01 JM9 ? GO:0016020 ... A9WEV5 38299372
    812495 8x2j:E (2.7) BS01 HEC ? GO:0009055 ... A9WEV6 38299372
    812496 8x2j:E (2.7) BS02 HEC ? GO:0009055 ... A9WEV6 38299372
    812497 8x2j:F (2.7) BS01 JLQ ? GO:0016020 ... A9WEV7 38299372
    812498 8x2j:F (2.7) BS02 JL3 ? GO:0016020 ... A9WEV7 38299372
    812499 8x2j:F (2.7) BS03 JM9 ? GO:0016020 ... A9WEV7 38299372
    812500 8x2k:A (3.03) BS01 5YM ? GO:0004930 ... P0ABE7
    P46089    		 N/A
    812501 8x2l:B (2.99) BS01 FAD 1.-.-.- GO:0005515 ... P04839 38355798
    812502 8x2l:B (2.99) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    812503 8x2l:B (2.99) BS03 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    812504 8x2l:B (2.99) BS04 MG 1.-.-.- GO:0005515 ... P04839 38355798
    812505 8x35:A (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    812506 8x35:A (1.92) BS02 DST 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    812507 8x35:B (1.92) BS01 IPE 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    812508 8x35:B (1.92) BS02 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    812509 8x35:B (1.92) BS03 DPO 2.5.1.28 GO:0000287 ... C1K5M2 38225831
    812510 8x36:A (2.28) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812511 8x36:A (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812512 8x36:B (2.28) BS01 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812513 8x36:B (2.28) BS02 IPE 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812514 8x36:B (2.28) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812515 8x37:A (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812516 8x37:A (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812517 8x37:B (1.98) BS01 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812518 8x37:B (1.98) BS02 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812519 8x37:B (1.98) BS03 DST 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812520 8x37:B (1.98) BS04 MG 2.5.1.28 GO:0016765 ... C1K5M2 38225831
    812521 8x38:A (2.0) BS01 FAD N/A GO:0071949 ... N/A N/A
    812522 8x39:A (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    812523 8x39:A (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    812524 8x39:A (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    812525 8x39:A (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    812526 8x39:B (1.7) BS01 CA ? GO:0000272 ... A3DK52 38501488
    812527 8x39:B (1.7) BS02 CA ? GO:0000272 ... A3DK52 38501488
    812528 8x39:B (1.7) BS03 CA ? GO:0000272 ... A3DK52 38501488
    812529 8x39:B (1.7) BS04 CA ? GO:0000272 ... A3DK52 38501488
    812530 8x3a:A (-1.00) BS01 CA ? GO:0000272 ... A3DK52 38501488
    812531 8x3a:A (-1.00) BS02 CA ? GO:0000272 ... A3DK52 38501488
    812532 8x3a:A (-1.00) BS03 CA ? GO:0000272 ... A3DK52 38501488
    812533 8x3a:A (-1.00) BS04 CA ? GO:0000272 ... A3DK52 38501488
    812534 8x3h:A (0.93) BS01 FE ? GO:0005576 ... P02789 N/A
    812535 8x3h:A (0.93) BS02 CO3 ? GO:0005576 ... P02789 N/A
    812536 8x3r:A (1.76) BS01 peptide ? GO:0000122 ... P61964 38744853
    812537 8x3s:A (1.87) BS01 peptide ? GO:0000122 ... P61964 38744853
    812538 8x43:A (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    812539 8x43:A (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    812540 8x43:C (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    812541 8x43:C (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    812542 8x43:E (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    812543 8x43:E (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    812544 8x43:G (3.0) BS01 7Q0 ? GO:0005216 ... O43526 38167918
    812545 8x43:G (3.0) BS02 7Q0 ? GO:0005216 ... O43526 38167918
    812546 8x51:A (2.92) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812547 8x51:A (2.92) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812548 8x51:A (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812549 8x51:B (2.92) BS01 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812550 8x51:B (2.92) BS02 dna 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812551 8x51:B (2.92) BS03 CA 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812552 8x52:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    812553 8x52:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    812554 8x53:B (3.0) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    812555 8x53:C (3.0) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    812556 8x53:C (3.0) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    812557 8x54:B (2.9) BS01 peptide 3.4.23.- GO:0000045 ... P49768 38843321
    812558 8x54:C (2.9) BS01 CLR ? GO:0000139 ... Q96BI3 38843321
    812559 8x54:C (2.9) BS02 CLR ? GO:0000139 ... Q96BI3 38843321
    812560 8x54:C (2.9) BS03 CLR ? GO:0000139 ... Q96BI3 38843321
    812561 8x5d:G (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    812562 8x5d:H (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    812563 8x5d:I (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    812564 8x5d:J (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    812565 8x5d:K (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    812566 8x5d:L (3.1) BS01 rna 3.1.-.- GO:0003723 ... P9WJF9 38218299
    812567 8x5d:N (3.1) BS01 rna ? GO:0003723 ... P9WJF5 38218299
    812568 8x5f:A (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    812569 8x5f:A (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    812570 8x5f:A (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    812571 8x5f:A (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    812572 8x5f:A (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    812573 8x5f:B (2.96) BS01 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    812574 8x5f:B (2.96) BS02 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    812575 8x5f:B (2.96) BS03 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    812576 8x5f:B (2.96) BS04 PO4 N/A GO:0000822 ... Q9UBH6 39169184
    812577 8x5f:B (2.96) BS05 IHP N/A GO:0000822 ... Q9UBH6 39169184
    812578 8x5i:A (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812579 8x5i:A (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812580 8x5i:B (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812581 8x5i:B (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812582 8x5i:C (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812583 8x5i:D (3.01) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812584 8x5i:D (3.01) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812585 8x5j:A (1.7) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 N/A
    812586 8x5j:B (1.7) BS01 ZN 2.4.2.-
    2.4.2.30    		 GO:0003950 ... O95271 N/A
    812587 8x5k:A (1.8) BS01 3YT 2.7.10.2 GO:0004672 ... P43405 N/A
    812588 8x5l:A (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    812589 8x5l:B (2.75) BS01 RKD 2.7.11.11 GO:0000287 ... P17612 N/A
    812590 8x5m:A (2.0) BS01 Y4O 2.7.11.24 GO:0004672 ... P45983 N/A
    812591 8x5n:A (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812592 8x5n:A (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812593 8x5n:B (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812594 8x5n:C (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812595 8x5n:D (2.8) BS01 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812596 8x5n:D (2.8) BS02 ATP 3.1.-.- GO:0004519 ... J8H9C1 38471529
    812597 8x5y:B (3.0) BS01 XB7 ? GO:0004930 ... P0ABE7
    P35367    		 38167898
    812598 8x61:A (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    812599 8x61:A (3.05) BS02 ATP ? GO:0000917 ... P0A9R7 38814940
    812600 8x61:B (3.05) BS01 ATP ? GO:0000917 ... P0A9R7 38814940
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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