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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    810801 8wh9:B (3.31) BS01 dna ? GO:0000325 ... P59259 38413824
    810802 8wh9:B (3.31) BS02 dna ? GO:0000325 ... P59259 38413824
    810803 8wh9:C (3.31) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    810804 8wh9:C (3.31) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    810805 8wh9:D (3.31) BS01 dna ? GO:0000786 ... O23629 38413824
    810806 8wh9:D (3.31) BS02 dna ? GO:0000786 ... O23629 38413824
    810807 8wh9:E (3.31) BS01 dna ? GO:0000786 ... P59226 38413824
    810808 8wh9:E (3.31) BS02 dna ? GO:0000786 ... P59226 38413824
    810809 8wh9:F (3.31) BS01 dna ? GO:0000325 ... P59259 38413824
    810810 8wh9:G (3.31) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    810811 8wh9:G (3.31) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    810812 8wh9:H (3.31) BS01 dna ? GO:0000786 ... O23629 38413824
    810813 8wh9:H (3.31) BS02 dna ? GO:0000786 ... O23629 38413824
    810814 8wh9:K (3.31) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810815 8wh9:K (3.31) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810816 8wh9:K (3.31) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810817 8wha:A (4.05) BS01 dna ? GO:0000786 ... P59226 38413824
    810818 8wha:A (4.05) BS02 dna ? GO:0000786 ... P59226 38413824
    810819 8wha:B (4.05) BS01 dna ? GO:0000325 ... P59259 38413824
    810820 8wha:B (4.05) BS02 dna ? GO:0000325 ... P59259 38413824
    810821 8wha:C (4.05) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    810822 8wha:C (4.05) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    810823 8wha:D (4.05) BS01 dna ? GO:0000786 ... O23629 38413824
    810824 8wha:D (4.05) BS02 dna ? GO:0000786 ... O23629 38413824
    810825 8wha:E (4.05) BS01 dna ? GO:0000786 ... P59226 38413824
    810826 8wha:E (4.05) BS02 dna ? GO:0000786 ... P59226 38413824
    810827 8wha:F (4.05) BS01 dna ? GO:0000325 ... P59259 38413824
    810828 8wha:G (4.05) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    810829 8wha:G (4.05) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    810830 8wha:H (4.05) BS01 dna ? GO:0000786 ... O23629 38413824
    810831 8wha:H (4.05) BS02 dna ? GO:0000786 ... O23629 38413824
    810832 8wha:K (4.05) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810833 8wha:K (4.05) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810834 8wha:K (4.05) BS03 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810835 8wha:L (4.05) BS01 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810836 8wha:L (4.05) BS02 dna 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810837 8wha:L (4.05) BS03 BEF 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810838 8wha:L (4.05) BS04 ADP 3.6.4.12 GO:0000786 ... Q9XFH4 38413824
    810839 8whb:A (3.17) BS01 dna ? GO:0000786 ... P59226 38413824
    810840 8whb:A (3.17) BS02 dna ? GO:0000786 ... P59226 38413824
    810841 8whb:B (3.17) BS01 dna ? GO:0000325 ... P59259 38413824
    810842 8whb:C (3.17) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    810843 8whb:C (3.17) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    810844 8whb:D (3.17) BS01 dna ? GO:0000786 ... O23629 38413824
    810845 8whb:D (3.17) BS02 dna ? GO:0000786 ... O23629 38413824
    810846 8whb:E (3.17) BS01 dna ? GO:0000786 ... P59226 38413824
    810847 8whb:E (3.17) BS02 dna ? GO:0000786 ... P59226 38413824
    810848 8whb:F (3.17) BS01 dna ? GO:0000325 ... P59259 38413824
    810849 8whb:F (3.17) BS02 dna ? GO:0000325 ... P59259 38413824
    810850 8whb:G (3.17) BS01 dna ? GO:0000786 ... Q9LD28 38413824
    810851 8whb:G (3.17) BS02 dna ? GO:0000786 ... Q9LD28 38413824
    810852 8whb:H (3.17) BS01 dna ? GO:0000786 ... O23629 38413824
    810853 8whb:H (3.17) BS02 dna ? GO:0000786 ... O23629 38413824
    810854 8whx:1 (2.8) BS01 rna ? GO:0003735 ... A0QV03 38245551
    810855 8whx:2 (2.8) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    810856 8whx:3 (2.8) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    810857 8whx:3 (2.8) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    810858 8whx:4 (2.8) BS01 rna ? GO:0003735 ... A0R215 38245551
    810859 8whx:5 (2.8) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    810860 8whx:6 (2.8) BS01 rna ? GO:0003735 ... A0QS39 38245551
    810861 8whx:7 (2.8) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    810862 8whx:8 (2.8) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    810863 8whx:E (2.8) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    810864 8whx:F (2.8) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    810865 8whx:G (2.8) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    810866 8whx:H (2.8) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    810867 8whx:H (2.8) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    810868 8whx:I (2.8) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    810869 8whx:J (2.8) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    810870 8whx:M (2.8) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    810871 8whx:N (2.8) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    810872 8whx:N (2.8) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    810873 8whx:O (2.8) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    810874 8whx:Q (2.8) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    810875 8whx:R (2.8) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    810876 8whx:R (2.8) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    810877 8whx:S (2.8) BS01 rna ? GO:0003735 ... A0QV42 38245551
    810878 8whx:S (2.8) BS02 rna ? GO:0003735 ... A0QV42 38245551
    810879 8whx:T (2.8) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    810880 8whx:U (2.8) BS01 rna ? GO:0003723 ... A0R151 38245551
    810881 8whx:V (2.8) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    810882 8whx:W (2.8) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    810883 8whx:X (2.8) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    810884 8whx:Z (2.8) BS01 rna ? GO:0003735 ... A0R150 38245551
    810885 8whx:c (2.8) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    810886 8whx:d (2.8) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    810887 8whx:e (2.8) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    810888 8whx:f (2.8) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    810889 8whx:g (2.8) BS01 rna ? GO:0003735 ... N/A 38245551
    810890 8whx:g (2.8) BS02 rna ? GO:0003735 ... N/A 38245551
    810891 8whx:h (2.8) BS01 rna ? GO:0000028 ... A0QS97 38245551
    810892 8whx:i (2.8) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    810893 8whx:j (2.8) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    810894 8whx:k (2.8) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    810895 8whx:l (2.8) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    810896 8whx:m (2.8) BS01 rna ? GO:0000049 ... A0QS96 38245551
    810897 8whx:n (2.8) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    810898 8whx:o (2.8) BS01 rna ? GO:0003735 ... A0R550 38245551
    810899 8whx:p (2.8) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    810900 8whx:p (2.8) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    810901 8whx:q (2.8) BS01 rna ? GO:0003735 ... A0QV37 38245551
    810902 8whx:r (2.8) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    810903 8whx:s (2.8) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    810904 8whx:t (2.8) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    810905 8whx:u (2.8) BS01 rna ? GO:0003723 ... A0R102 38245551
    810906 8whx:w (2.8) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    810907 8why:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    810908 8why:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    810909 8why:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    810910 8why:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    810911 8why:4 (2.7) BS01 rna ? GO:0003735 ... A0R215 38245551
    810912 8why:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    810913 8why:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    810914 8why:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    810915 8why:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    810916 8why:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    810917 8why:F (2.7) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    810918 8why:G (2.7) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    810919 8why:H (2.7) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    810920 8why:H (2.7) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    810921 8why:I (2.7) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    810922 8why:J (2.7) BS01 rna ? GO:0003735 ... A0R7F6 38245551
    810923 8why:M (2.7) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    810924 8why:N (2.7) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    810925 8why:O (2.7) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    810926 8why:Q (2.7) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    810927 8why:R (2.7) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    810928 8why:R (2.7) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    810929 8why:S (2.7) BS01 rna ? GO:0003735 ... A0QV42 38245551
    810930 8why:T (2.7) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    810931 8why:U (2.7) BS01 rna ? GO:0003723 ... A0R151 38245551
    810932 8why:V (2.7) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    810933 8why:W (2.7) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    810934 8why:X (2.7) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    810935 8why:Z (2.7) BS01 rna ? GO:0003735 ... A0R150 38245551
    810936 8why:Z (2.7) BS02 rna ? GO:0003735 ... A0R150 38245551
    810937 8wi0:A (2.93) BS01 peptide N/A GO:0005524 ... O15440 38844452
    810938 8wi2:A (4.06) BS01 peptide N/A GO:0005524 ... O15440 38844452
    810939 8wi5:A (3.46) BS01 peptide N/A GO:0005524 ... O15440 38844452
    810940 8wi7:1 (3.5) BS01 rna ? GO:0003735 ... A0QV03 38245551
    810941 8wi7:2 (3.5) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    810942 8wi7:3 (3.5) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    810943 8wi7:3 (3.5) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    810944 8wi7:4 (3.5) BS01 rna ? GO:0003735 ... A0R215 38245551
    810945 8wi7:5 (3.5) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    810946 8wi7:6 (3.5) BS01 rna ? GO:0003735 ... A0QS39 38245551
    810947 8wi7:7 (3.5) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    810948 8wi7:8 (3.5) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    810949 8wi7:E (3.5) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    810950 8wi7:F (3.5) BS01 rna ? GO:0003735 ... A0QSD1 38245551
    810951 8wi7:G (3.5) BS01 rna ? GO:0003735 ... A0QSD2 38245551
    810952 8wi7:H (3.5) BS01 rna ? GO:0000049 ... A0QSG1 38245551
    810953 8wi7:H (3.5) BS02 rna ? GO:0000049 ... A0QSG1 38245551
    810954 8wi7:I (3.5) BS01 rna ? GO:0002181 ... A0QSG4 38245551
    810955 8wi7:M (3.5) BS01 rna ? GO:0003729 ... A0QSP8 38245551
    810956 8wi7:N (3.5) BS01 rna ? GO:0003735 ... A0QSF9 38245551
    810957 8wi7:N (3.5) BS02 rna ? GO:0003735 ... A0QSF9 38245551
    810958 8wi7:O (3.5) BS01 rna ? GO:0003735 ... A0QSG8 38245551
    810959 8wi7:Q (3.5) BS01 rna ? GO:0003735 ... A0QSL9 38245551
    810960 8wi7:R (3.5) BS01 rna ? GO:0003735 ... A0QSG5 38245551
    810961 8wi7:R (3.5) BS02 rna ? GO:0003735 ... A0QSG5 38245551
    810962 8wi7:S (3.5) BS01 rna ? GO:0003735 ... A0QV42 38245551
    810963 8wi7:S (3.5) BS02 rna ? GO:0003735 ... A0QV42 38245551
    810964 8wi7:T (3.5) BS01 rna ? GO:0000027 ... A0QYU6 38245551
    810965 8wi7:U (3.5) BS01 rna ? GO:0003723 ... A0R151 38245551
    810966 8wi7:V (3.5) BS01 rna ? GO:0003735 ... A0QSD6 38245551
    810967 8wi7:W (3.5) BS01 rna ? GO:0000027 ... A0QSD3 38245551
    810968 8wi7:X (3.5) BS01 rna ? GO:0003723 ... A0QSG0 38245551
    810969 8wi7:Z (3.5) BS01 rna ? GO:0003735 ... A0R150 38245551
    810970 8wi7:c (3.5) BS01 rna ? GO:0003735 ... A0QVB8 38245551
    810971 8wi7:d (3.5) BS01 rna ? GO:0003676 ... A0QSD7 38245551
    810972 8wi7:e (3.5) BS01 rna ? GO:0003723 ... A0QSL7 38245551
    810973 8wi7:f (3.5) BS01 rna ? GO:0003723 ... A0QSG6 38245551
    810974 8wi7:g (3.5) BS01 rna ? GO:0003735 ... N/A 38245551
    810975 8wi7:g (3.5) BS02 rna ? GO:0003735 ... N/A 38245551
    810976 8wi7:h (3.5) BS01 rna ? GO:0000028 ... A0QS97 38245551
    810977 8wi7:i (3.5) BS01 rna ? GO:0003735 ... A0QSG3 38245551
    810978 8wi7:j (3.5) BS01 rna ? GO:0003723 ... A0QSP9 38245551
    810979 8wi7:k (3.5) BS01 rna ? GO:0000049 ... A0QSD0 38245551
    810980 8wi7:l (3.5) BS01 rna ? GO:0003735 ... A0QSL6 38245551
    810981 8wi7:m (3.5) BS01 rna ? GO:0000049 ... A0QS96 38245551
    810982 8wi7:n (3.5) BS01 rna ? GO:0000049 ... A0QSL5 38245551
    810983 8wi7:o (3.5) BS01 rna ? GO:0003735 ... A0R550 38245551
    810984 8wi7:p (3.5) BS01 rna ? GO:0003735 ... A0QVQ3 38245551
    810985 8wi7:p (3.5) BS02 rna ? GO:0003735 ... A0QVQ3 38245551
    810986 8wi7:q (3.5) BS01 rna ? GO:0003735 ... A0QV37 38245551
    810987 8wi7:r (3.5) BS01 rna ? GO:0003735 ... A0QSE0 38245551
    810988 8wi7:s (3.5) BS01 rna ? GO:0003735 ... A0R7F7 38245551
    810989 8wi7:t (3.5) BS01 rna ? GO:0000028 ... A0QSD5 38245551
    810990 8wi7:u (3.5) BS01 rna ? GO:0003723 ... A0R102 38245551
    810991 8wi7:w (3.5) BS01 rna ? GO:0006417 ... A0QZ86 38245551
    810992 8wi8:1 (2.7) BS01 rna ? GO:0003735 ... A0QV03 38245551
    810993 8wi8:2 (2.7) BS01 rna ? GO:0003735 ... A0QSD9 38245551
    810994 8wi8:3 (2.7) BS01 rna ? GO:0003735 ... A0QSG7 38245551
    810995 8wi8:3 (2.7) BS02 rna ? GO:0003735 ... A0QSG7 38245551
    810996 8wi8:5 (2.7) BS01 rna ? GO:0003735 ... A0R3I9 38245551
    810997 8wi8:6 (2.7) BS01 rna ? GO:0003735 ... A0QS39 38245551
    810998 8wi8:7 (2.7) BS01 rna ? GO:0003735 ... A0R7K0 38245551
    810999 8wi8:8 (2.7) BS01 rna ? GO:0003735 ... A0QYU7 38245551
    811000 8wi8:E (2.7) BS01 rna ? GO:0002181 ... A0QSD4 38245551
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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