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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    810201 8wdv:9 (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    810202 8wdv:9 (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    810203 8wdv:9 (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    810204 8wdv:9 (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    810205 8wdv:A (2.24) BS01 BCL ? GO:0005886 ... D3RP69 38347078
    810206 8wdv:A (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    810207 8wdv:A (2.24) BS03 CRT ? GO:0005886 ... D3RP69 38347078
    810208 8wdv:A (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    810209 8wdv:A (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    810210 8wdv:B (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    810211 8wdv:B (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    810212 8wdv:B (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    810213 8wdv:C (2.24) BS01 HEM ? GO:0005506 ... O82947 38347078
    810214 8wdv:C (2.24) BS02 HEM ? GO:0005506 ... O82947 38347078
    810215 8wdv:C (2.24) BS03 HEM ? GO:0005506 ... O82947 38347078
    810216 8wdv:C (2.24) BS04 HEM ? GO:0005506 ... O82947 38347078
    810217 8wdv:C (2.24) BS05 MG ? GO:0005506 ... O82947 38347078
    810218 8wdv:C (2.24) BS06 Z41 ? GO:0005506 ... O82947 38347078
    810219 8wdv:D (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    810220 8wdv:D (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    810221 8wdv:D (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    810222 8wdv:D (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    810223 8wdv:D (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    810224 8wdv:D (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    810225 8wdv:E (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    810226 8wdv:E (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    810227 8wdv:E (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    810228 8wdv:F (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    810229 8wdv:F (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    810230 8wdv:F (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    810231 8wdv:F (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    810232 8wdv:F (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    810233 8wdv:F (2.24) BS06 BCL ? GO:0005886 ... D3RP74 38347078
    810234 8wdv:F (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    810235 8wdv:G (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    810236 8wdv:G (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    810237 8wdv:G (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    810238 8wdv:I (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    810239 8wdv:I (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    810240 8wdv:I (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    810241 8wdv:I (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    810242 8wdv:I (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    810243 8wdv:I (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    810244 8wdv:J (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    810245 8wdv:J (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    810246 8wdv:J (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    810247 8wdv:K (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    810248 8wdv:K (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    810249 8wdv:K (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    810250 8wdv:K (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    810251 8wdv:K (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    810252 8wdv:K (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    810253 8wdv:L (2.24) BS01 Z41 ? GO:0009772 ... P51762 38347078
    810254 8wdv:L (2.24) BS02 BCL ? GO:0009772 ... P51762 38347078
    810255 8wdv:L (2.24) BS03 BPH ? GO:0009772 ... P51762 38347078
    810256 8wdv:L (2.24) BS04 UQ8 ? GO:0009772 ... P51762 38347078
    810257 8wdv:L (2.24) BS05 UQ8 ? GO:0009772 ... P51762 38347078
    810258 8wdv:L (2.24) BS06 BCL ? GO:0009772 ... P51762 38347078
    810259 8wdv:L (2.24) BS07 UQ8 ? GO:0009772 ... P51762 38347078
    810260 8wdv:L (2.24) BS08 FE ? GO:0009772 ... P51762 38347078
    810261 8wdv:L (2.24) BS09 BCL ? GO:0009772 ... P51762 38347078
    810262 8wdv:L (2.24) BS10 BPH ? GO:0009772 ... P51762 38347078
    810263 8wdv:L (2.24) BS11 MQ8 ? GO:0009772 ... P51762 38347078
    810264 8wdv:M (2.24) BS01 BPH ? GO:0009772 ... P51763 38347078
    810265 8wdv:M (2.24) BS02 BCL ? GO:0009772 ... P51763 38347078
    810266 8wdv:M (2.24) BS03 UQ8 ? GO:0009772 ... P51763 38347078
    810267 8wdv:M (2.24) BS04 FE ? GO:0009772 ... P51763 38347078
    810268 8wdv:M (2.24) BS05 BCL ? GO:0009772 ... P51763 38347078
    810269 8wdv:M (2.24) BS06 BCL ? GO:0009772 ... P51763 38347078
    810270 8wdv:M (2.24) BS07 BPH ? GO:0009772 ... P51763 38347078
    810271 8wdv:M (2.24) BS08 MQ8 ? GO:0009772 ... P51763 38347078
    810272 8wdv:M (2.24) BS09 CRT ? GO:0009772 ... P51763 38347078
    810273 8wdv:N (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    810274 8wdv:N (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    810275 8wdv:N (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    810276 8wdv:O (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    810277 8wdv:O (2.24) BS02 CRT ? GO:0005886 ... D3RP69 38347078
    810278 8wdv:O (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    810279 8wdv:O (2.24) BS04 BCL ? GO:0005886 ... D3RP69 38347078
    810280 8wdv:O (2.24) BS05 CRT ? GO:0005886 ... D3RP69 38347078
    810281 8wdv:O (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    810282 8wdv:P (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    810283 8wdv:P (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    810284 8wdv:P (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    810285 8wdv:Q (2.24) BS01 CRT ? GO:0005886 ... D3RP69 38347078
    810286 8wdv:Q (2.24) BS02 BCL ? GO:0005886 ... D3RP69 38347078
    810287 8wdv:Q (2.24) BS03 BCL ? GO:0005886 ... D3RP69 38347078
    810288 8wdv:Q (2.24) BS04 CRT ? GO:0005886 ... D3RP69 38347078
    810289 8wdv:Q (2.24) BS05 BCL ? GO:0005886 ... D3RP69 38347078
    810290 8wdv:Q (2.24) BS06 CRT ? GO:0005886 ... D3RP69 38347078
    810291 8wdv:R (2.24) BS01 BCL ? GO:0005886 ... D3RP75 38347078
    810292 8wdv:R (2.24) BS02 BCL ? GO:0005886 ... D3RP75 38347078
    810293 8wdv:R (2.24) BS03 CRT ? GO:0005886 ... D3RP75 38347078
    810294 8wdv:S (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    810295 8wdv:S (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    810296 8wdv:S (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    810297 8wdv:S (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    810298 8wdv:S (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    810299 8wdv:S (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    810300 8wdv:T (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    810301 8wdv:T (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    810302 8wdv:T (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    810303 8wdv:U (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    810304 8wdv:U (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    810305 8wdv:U (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    810306 8wdv:U (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    810307 8wdv:U (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    810308 8wdv:U (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    810309 8wdv:V (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    810310 8wdv:V (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    810311 8wdv:V (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    810312 8wdv:W (2.24) BS01 UQ8 ? GO:0005886 ... D3RP74 38347078
    810313 8wdv:W (2.24) BS02 CRT ? GO:0005886 ... D3RP74 38347078
    810314 8wdv:W (2.24) BS03 BCL ? GO:0005886 ... D3RP74 38347078
    810315 8wdv:W (2.24) BS04 CA ? GO:0005886 ... D3RP74 38347078
    810316 8wdv:W (2.24) BS05 BCL ? GO:0005886 ... D3RP74 38347078
    810317 8wdv:W (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    810318 8wdv:W (2.24) BS07 CRT ? GO:0005886 ... D3RP74 38347078
    810319 8wdv:X (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    810320 8wdv:X (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    810321 8wdv:X (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    810322 8wdv:Y (2.24) BS01 CRT ? GO:0005886 ... D3RP74 38347078
    810323 8wdv:Y (2.24) BS02 BCL ? GO:0005886 ... D3RP74 38347078
    810324 8wdv:Y (2.24) BS03 CA ? GO:0005886 ... D3RP74 38347078
    810325 8wdv:Y (2.24) BS04 BCL ? GO:0005886 ... D3RP74 38347078
    810326 8wdv:Y (2.24) BS05 CRT ? GO:0005886 ... D3RP74 38347078
    810327 8wdv:Y (2.24) BS06 CRT ? GO:0005886 ... D3RP74 38347078
    810328 8wdv:Z (2.24) BS01 BCL ? GO:0005886 ... D3RP68 38347078
    810329 8wdv:Z (2.24) BS02 BCL ? GO:0005886 ... D3RP68 38347078
    810330 8wdv:Z (2.24) BS03 CRT ? GO:0005886 ... D3RP68 38347078
    810331 8wdv:Z (2.24) BS04 BCL ? GO:0005886 ... D3RP68 38347078
    810332 8wdx:A (1.65) BS01 W6K ? GO:0005324 ... P15090 38043490
    810333 8we3:A (1.82) BS01 W6B ? GO:0005324 ... P15090 38043490
    810334 8we6:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    810335 8we6:A (2.9) BS02 CLR ? GO:0002520 ... Q13936 37972591
    810336 8we6:A (2.9) BS03 CLR ? GO:0002520 ... Q13936 37972591
    810337 8we6:A (2.9) BS04 CLR ? GO:0002520 ... Q13936 37972591
    810338 8we6:A (2.9) BS05 CLR ? GO:0002520 ... Q13936 37972591
    810339 8we6:A (2.9) BS06 PT5 ? GO:0002520 ... Q13936 37972591
    810340 8we7:A (3.2) BS01 CA ? GO:0002520 ... Q13936 37972591
    810341 8we7:A (3.2) BS02 CLR ? GO:0002520 ... Q13936 37972591
    810342 8we7:A (3.2) BS03 CLR ? GO:0002520 ... Q13936 37972591
    810343 8we8:A (2.9) BS01 CA ? GO:0002520 ... Q13936 37972591
    810344 8we8:A (2.9) BS02 CLR ? GO:0002520 ... Q13936 37972591
    810345 8we8:A (2.9) BS03 CLR ? GO:0002520 ... Q13936 37972591
    810346 8we8:A (2.9) BS04 CLR ? GO:0002520 ... Q13936 37972591
    810347 8we8:A (2.9) BS05 CLR ? GO:0002520 ... Q13936 37972591
    810348 8we8:A (2.9) BS06 PT5 ? GO:0002520 ... Q13936 37972591
    810349 8we8:A (2.9) BS07 6UB ? GO:0002520 ... Q13936 37972591
    810350 8we8:A (2.9) BS08 CLR ? GO:0002520 ... Q13936 37972591
    810351 8we8:B (2.9) BS01 CLR ? GO:0005246 ... P22947 37972591
    810352 8we9:A (3.0) BS01 CA ? GO:0002520 ... Q13936 37972591
    810353 8we9:A (3.0) BS02 CLR ? GO:0002520 ... Q13936 37972591
    810354 8we9:A (3.0) BS03 CLR ? GO:0002520 ... Q13936 37972591
    810355 8we9:A (3.0) BS04 CLR ? GO:0002520 ... Q13936 37972591
    810356 8we9:A (3.0) BS05 PT5 ? GO:0002520 ... Q13936 37972591
    810357 8wea:A (3.2) BS01 9Z9 ? GO:0002520 ... Q13936 37972591
    810358 8wea:A (3.2) BS02 WB9 ? GO:0002520 ... Q13936 37972591
    810359 8wej:B (2.79) BS01 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    810360 8wej:B (2.79) BS02 HEM 1.-.-.- GO:0005515 ... P04839 38355798
    810361 8wej:B (2.79) BS03 NDP 1.-.-.- GO:0005515 ... P04839 38355798
    810362 8wej:B (2.79) BS04 FDA 1.-.-.- GO:0005515 ... P04839 38355798
    810363 8wej:E (2.79) BS01 peptide 3.6.5.2 GO:0001764 ... P63000 38355798
    810364 8wej:E (2.79) BS02 GTP 3.6.5.2 GO:0001764 ... P63000 38355798
    810365 8wej:E (2.79) BS03 MG 3.6.5.2 GO:0001764 ... P63000 38355798
    810366 8wex:A (2.33) BS01 ZN ? GO:0016740 ... A0A3A6V1D8 37895170
    810367 8wex:B (2.33) BS01 ZN ? GO:0016740 ... A0A3A6V1D8 37895170
    810368 8wey:1 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    810369 8wey:1 (1.92) BS02 CLA N/A GO:0009765 ... N/A 38442179
    810370 8wey:1 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    810371 8wey:1 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    810372 8wey:1 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    810373 8wey:1 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    810374 8wey:1 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    810375 8wey:1 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    810376 8wey:1 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    810377 8wey:1 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    810378 8wey:1 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    810379 8wey:1 (1.92) BS12 5X6 N/A GO:0009765 ... N/A 38442179
    810380 8wey:1 (1.92) BS13 5X6 N/A GO:0009765 ... N/A 38442179
    810381 8wey:1 (1.92) BS14 5X6 N/A GO:0009765 ... N/A 38442179
    810382 8wey:1 (1.92) BS15 5X6 N/A GO:0009765 ... N/A 38442179
    810383 8wey:1 (1.92) BS16 5X6 N/A GO:0009765 ... N/A 38442179
    810384 8wey:2 (1.92) BS01 CLA N/A GO:0009765 ... N/A 38442179
    810385 8wey:2 (1.92) BS02 5X6 N/A GO:0009765 ... N/A 38442179
    810386 8wey:2 (1.92) BS03 CLA N/A GO:0009765 ... N/A 38442179
    810387 8wey:2 (1.92) BS04 CLA N/A GO:0009765 ... N/A 38442179
    810388 8wey:2 (1.92) BS05 CLA N/A GO:0009765 ... N/A 38442179
    810389 8wey:2 (1.92) BS06 CLA N/A GO:0009765 ... N/A 38442179
    810390 8wey:2 (1.92) BS07 CLA N/A GO:0009765 ... N/A 38442179
    810391 8wey:2 (1.92) BS08 CLA N/A GO:0009765 ... N/A 38442179
    810392 8wey:2 (1.92) BS09 CLA N/A GO:0009765 ... N/A 38442179
    810393 8wey:2 (1.92) BS10 CLA N/A GO:0009765 ... N/A 38442179
    810394 8wey:2 (1.92) BS11 CLA N/A GO:0009765 ... N/A 38442179
    810395 8wey:2 (1.92) BS12 CLA N/A GO:0009765 ... N/A 38442179
    810396 8wey:2 (1.92) BS13 CLA N/A GO:0009765 ... N/A 38442179
    810397 8wey:2 (1.92) BS14 CLA N/A GO:0009765 ... N/A 38442179
    810398 8wey:2 (1.92) BS15 5X6 N/A GO:0009765 ... N/A 38442179
    810399 8wey:2 (1.92) BS16 5X6 N/A GO:0009765 ... N/A 38442179
    810400 8wey:2 (1.92) BS17 5X6 N/A GO:0009765 ... N/A 38442179
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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