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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809201 8w8p:D (3.165) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    809202 8w8p:D (3.165) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    809203 8w8p:D (3.165) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    809204 8w8p:D (3.165) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    809205 8w8p:D (3.165) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    809206 8w8p:D (3.165) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    809207 8w8p:D (3.165) BS08 2TM N/A GO:0000287 ... Q8RQE8 38990947
    809208 8w8p:F (3.165) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    809209 8w8p:F (3.165) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    809210 8w8p:F (3.165) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    809211 8w9a:A (2.7) BS01 UEX 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38582077
    809212 8w9b:A (3.0) BS01 UJ3 2.7.11.1
    2.7.1.137
    2.7.1.153    		 GO:0001525 ... P42336 38582077
    809213 8w9c:B (3.3) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    809214 8w9c:E (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    809215 8w9c:E (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    809216 8w9c:E (3.3) BS03 ZN ? GO:0000118 ... Q04779 38598631
    809217 8w9c:F (3.3) BS01 ZN ? GO:0000118 ... Q04779 38598631
    809218 8w9c:F (3.3) BS02 ZN ? GO:0000118 ... Q04779 38598631
    809219 8w9d:B (3.9) BS01 peptide 3.5.1.98 GO:0000082 ... P32561 38598631
    809220 8w9d:B (3.9) BS02 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    809221 8w9d:E (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    809222 8w9d:E (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    809223 8w9d:E (3.9) BS03 ZN ? GO:0000118 ... Q04779 38598631
    809224 8w9d:F (3.9) BS01 ZN ? GO:0000118 ... Q04779 38598631
    809225 8w9d:F (3.9) BS02 ZN ? GO:0000118 ... Q04779 38598631
    809226 8w9d:a (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    809227 8w9d:a (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    809228 8w9d:b (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    809229 8w9d:b (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    809230 8w9d:c (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    809231 8w9d:c (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    809232 8w9d:d (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    809233 8w9d:d (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    809234 8w9d:e (3.9) BS01 dna ? GO:0000786 ... P68431 38598631
    809235 8w9d:e (3.9) BS02 dna ? GO:0000786 ... P68431 38598631
    809236 8w9d:f (3.9) BS01 dna ? GO:0000781 ... P62805 38598631
    809237 8w9d:f (3.9) BS02 dna ? GO:0000781 ... P62805 38598631
    809238 8w9d:g (3.9) BS01 dna ? GO:0000786 ... P04908 38598631
    809239 8w9d:g (3.9) BS02 dna ? GO:0000786 ... P04908 38598631
    809240 8w9d:h (3.9) BS01 dna ? GO:0000786 ... O60814 38598631
    809241 8w9d:h (3.9) BS02 dna ? GO:0000786 ... O60814 38598631
    809242 8w9e:B (3.6) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    809243 8w9e:E (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    809244 8w9e:E (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    809245 8w9e:E (3.6) BS03 ZN ? GO:0000118 ... Q04779 38598631
    809246 8w9e:E (3.6) BS04 ZN ? GO:0000118 ... Q04779 38598631
    809247 8w9e:F (3.6) BS01 ZN ? GO:0000118 ... Q04779 38598631
    809248 8w9e:F (3.6) BS02 ZN ? GO:0000118 ... Q04779 38598631
    809249 8w9e:a (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    809250 8w9e:a (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    809251 8w9e:b (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    809252 8w9e:b (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    809253 8w9e:c (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    809254 8w9e:c (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    809255 8w9e:d (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    809256 8w9e:d (3.6) BS02 dna ? GO:0000786 ... O60814 38598631
    809257 8w9e:e (3.6) BS01 dna ? GO:0000786 ... P68431 38598631
    809258 8w9e:e (3.6) BS02 dna ? GO:0000786 ... P68431 38598631
    809259 8w9e:f (3.6) BS01 dna ? GO:0000781 ... P62805 38598631
    809260 8w9e:f (3.6) BS02 dna ? GO:0000781 ... P62805 38598631
    809261 8w9e:g (3.6) BS01 dna ? GO:0000786 ... P04908 38598631
    809262 8w9e:g (3.6) BS02 dna ? GO:0000786 ... P04908 38598631
    809263 8w9e:h (3.6) BS01 dna ? GO:0000786 ... O60814 38598631
    809264 8w9f:B (4.4) BS01 ZN 3.5.1.98 GO:0000082 ... P32561 38598631
    809265 8w9f:E (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    809266 8w9f:E (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    809267 8w9f:E (4.4) BS03 ZN ? GO:0000118 ... Q04779 38598631
    809268 8w9f:F (4.4) BS01 ZN ? GO:0000118 ... Q04779 38598631
    809269 8w9f:F (4.4) BS02 ZN ? GO:0000118 ... Q04779 38598631
    809270 8w9f:G (4.4) BS01 dna ? GO:0000122 ... Q12432 38598631
    809271 8w9f:a (4.4) BS01 dna ? GO:0000786 ... P68431 38598631
    809272 8w9f:a (4.4) BS02 dna ? GO:0000786 ... P68431 38598631
    809273 8w9f:b (4.4) BS01 dna ? GO:0000781 ... P62805 38598631
    809274 8w9f:b (4.4) BS02 dna ? GO:0000781 ... P62805 38598631
    809275 8w9f:c (4.4) BS01 dna ? GO:0000786 ... P04908 38598631
    809276 8w9f:c (4.4) BS02 dna ? GO:0000786 ... P04908 38598631
    809277 8w9f:d (4.4) BS01 dna ? GO:0000786 ... O60814 38598631
    809278 8w9f:d (4.4) BS02 dna ? GO:0000786 ... O60814 38598631
    809279 8w9f:e (4.4) BS01 dna ? GO:0000786 ... P68431 38598631
    809280 8w9f:e (4.4) BS02 dna ? GO:0000786 ... P68431 38598631
    809281 8w9f:f (4.4) BS01 dna ? GO:0000781 ... P62805 38598631
    809282 8w9f:f (4.4) BS02 dna ? GO:0000781 ... P62805 38598631
    809283 8w9f:g (4.4) BS01 dna ? GO:0000786 ... P04908 38598631
    809284 8w9f:g (4.4) BS02 dna ? GO:0000786 ... P04908 38598631
    809285 8w9f:h (4.4) BS01 dna ? GO:0000786 ... O60814 38598631
    809286 8w9f:h (4.4) BS02 dna ? GO:0000786 ... O60814 38598631
    809287 8w9m:C (3.1) BS01 ATP ? GO:0005524 ... Q8YZ76 38457518
    809288 8w9m:C (3.1) BS02 MG ? GO:0005524 ... Q8YZ76 38457518
    809289 8w9m:C (3.1) BS03 ATP ? GO:0005524 ... Q8YZ76 38457518
    809290 8w9m:D (3.1) BS01 ATP ? GO:0005524 ... Q8YZ75 38457518
    809291 8w9m:D (3.1) BS02 ATP ? GO:0005524 ... Q8YZ75 38457518
    809292 8w9m:D (3.1) BS03 MG ? GO:0005524 ... Q8YZ75 38457518
    809293 8w9o:A (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    809294 8w9o:A (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    809295 8w9o:B (2.8) BS01 K ? GO:0005886 ... Q84TI7 38335958
    809296 8w9o:B (2.8) BS02 K ? GO:0005886 ... Q84TI7 38335958
    809297 8w9v:A (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    809298 8w9v:A (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    809299 8w9v:A (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    809300 8w9v:B (2.9) BS01 K ? GO:0005886 ... A0A3B6RK40 38335958
    809301 8w9v:B (2.9) BS02 K ? GO:0005886 ... A0A3B6RK40 38335958
    809302 8w9v:B (2.9) BS03 K ? GO:0005886 ... A0A3B6RK40 38335958
    809303 8w9w:A (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809304 8w9w:A (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809305 8w9w:B (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809306 8w9w:B (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809307 8w9w:C (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809308 8w9w:C (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809309 8w9w:D (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809310 8w9w:E (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809311 8w9w:F (3.74) BS01 UJO 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809312 8w9w:F (3.74) BS02 OPE 2.7.8.- GO:0016780 ... Q96LT4 38388831
    809313 8w9z:B (3.0) BS01 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    809314 8w9z:C (3.0) BS01 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    809315 8w9z:G (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    809316 8w9z:L (3.0) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    809317 8wa0:B (2.7) BS01 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    809318 8wa0:B (2.7) BS02 rna 2.7.7.6 GO:0000428 ... P06271 38428393
    809319 8wa0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    809320 8wa0:C (2.7) BS01 dna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    809321 8wa0:C (2.7) BS02 rna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    809322 8wa0:C (2.7) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    809323 8wa0:G (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    809324 8wa0:L (2.7) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    809325 8wa1:B (2.8) BS01 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    809326 8wa1:B (2.8) BS02 dna 2.7.7.6 GO:0000428 ... P06271 38428393
    809327 8wa1:B (2.8) BS03 rna 2.7.7.6 GO:0000428 ... P06271 38428393
    809328 8wa1:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... P06271 38428393
    809329 8wa1:C (2.8) BS01 dna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    809330 8wa1:C (2.8) BS02 rna 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    809331 8wa1:C (2.8) BS03 MG 2.7.7.6 GO:0000287 ... A0A140G1Q3 38428393
    809332 8wa1:G (2.8) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CKK0 38428393
    809333 8wa1:L (2.8) BS01 FE 1.15.1.1 GO:0004784 ... A0A1S4CIZ9 38428393
    809334 8wa1:c (2.8) BS01 dna 2.7.7.6 GO:0000428 ... P38550 38428393
    809335 8wa5:A (2.51) BS01 ALF 7.2.2.19 GO:0000166 ... P19156 38072058
    809336 8wa5:A (2.51) BS02 MG 7.2.2.19 GO:0000166 ... P19156 38072058
    809337 8wa5:A (2.51) BS03 CLR 7.2.2.19 GO:0000166 ... P19156 38072058
    809338 8wa7:A (1.63) BS01 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    809339 8wa7:A (1.63) BS02 MG 2.2.1.1 GO:0000287 ... P27302 N/A
    809340 8wa7:A (1.63) BS03 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    809341 8wa7:B (1.63) BS01 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    809342 8wa7:B (1.63) BS02 THD 2.2.1.1 GO:0000287 ... P27302 N/A
    809343 8wa7:B (1.63) BS03 MG 2.2.1.1 GO:0000287 ... P27302 N/A
    809344 8wa8:A (1.48) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    809345 8wa8:A (1.48) BS02 TPP 2.2.1.1 GO:0000287 ... P29401 N/A
    809346 8wa9:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    809347 8wa9:A (1.5) BS02 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    809348 8wa9:A (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    809349 8wa9:B (1.5) BS01 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    809350 8wa9:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    809351 8wa9:B (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    809352 8waa:A (1.5) BS01 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    809353 8waa:A (1.5) BS02 3GR 2.2.1.1 GO:0000287 ... P29401 N/A
    809354 8waa:A (1.5) BS03 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    809355 8waa:A (1.5) BS04 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    809356 8waa:B (1.5) BS01 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    809357 8waa:B (1.5) BS02 CA 2.2.1.1 GO:0000287 ... P29401 N/A
    809358 8waa:B (1.5) BS03 3GR 2.2.1.1 GO:0000287 ... P29401 N/A
    809359 8waa:B (1.5) BS04 THD 2.2.1.1 GO:0000287 ... P29401 N/A
    809360 8wak:0 (5.47) BS01 ZN ? GO:0000082 ... P51948 38127763
    809361 8wak:2 (5.47) BS01 ZN ? GO:0000438 ... Q13888 38127763
    809362 8wak:2 (5.47) BS02 ZN ? GO:0000438 ... Q13888 38127763
    809363 8wak:2 (5.47) BS03 ZN ? GO:0000438 ... Q13888 38127763
    809364 8wak:3 (5.47) BS01 ZN ? GO:0000438 ... Q13889 38127763
    809365 8wak:3 (5.47) BS02 ZN ? GO:0000438 ... Q13889 38127763
    809366 8wak:6 (5.47) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809367 8wak:6 (5.47) BS02 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    809368 8wak:7 (5.47) BS01 SF4 3.6.4.12 GO:0000439 ... P18074 38127763
    809369 8wak:P (5.47) BS01 dna ? GO:0000785 ... P20226 38127763
    809370 8wak:P (5.47) BS02 dna ? GO:0000785 ... P20226 38127763
    809371 8wak:Q (5.47) BS01 dna ? GO:0000979 ... P52655 38127763
    809372 8wak:R (5.47) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809373 8wak:R (5.47) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38127763
    809374 8wak:R (5.47) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38127763
    809375 8wak:T (5.47) BS01 dna 3.6.4.12 GO:0003677 ... P13984 38127763
    809376 8wak:U (5.47) BS01 ZN ? GO:0001113 ... P29083 38127763
    809377 8wak:o (5.47) BS01 peptide 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809378 8wak:o (5.47) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809379 8wak:o (5.47) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809380 8wak:o (5.47) BS04 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809381 8wak:o (5.47) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809382 8wak:o (5.47) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809383 8wak:o (5.47) BS07 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38127763
    809384 8wak:p (5.47) BS01 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809385 8wak:p (5.47) BS02 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809386 8wak:p (5.47) BS03 W0F 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809387 8wak:p (5.47) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38127763
    809388 8wak:q (5.47) BS01 ZN ? GO:0000428 ... I3LCH3 38127763
    809389 8wak:s (5.47) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38127763
    809390 8wak:w (5.47) BS01 ZN ? GO:0000428 ... P60899 38127763
    809391 8wak:w (5.47) BS02 ZN ? GO:0000428 ... P60899 38127763
    809392 8wak:x (5.47) BS01 ZN ? GO:0000428 ... A0A493TD97 38127763
    809393 8wak:z (5.47) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38127763
    809394 8wal:0 (8.52) BS01 ZN ? GO:0000082 ... P51948 38127763
    809395 8wal:2 (8.52) BS01 ZN ? GO:0000438 ... Q13888 38127763
    809396 8wal:2 (8.52) BS02 ZN ? GO:0000438 ... Q13888 38127763
    809397 8wal:2 (8.52) BS03 ZN ? GO:0000438 ... Q13888 38127763
    809398 8wal:3 (8.52) BS01 ZN ? GO:0000438 ... Q13889 38127763
    809399 8wal:3 (8.52) BS02 ZN ? GO:0000438 ... Q13889 38127763
    809400 8wal:6 (8.52) BS01 dna 5.6.2.4 GO:0000112 ... P19447 38127763
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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