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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    809001 8w4s:A (1.848) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    809002 8w4s:A (1.848) BS02 AJR 3.1.4.35 GO:0004114 ... O76074 37918035
    809003 8w4t:A (2.199) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035
    809004 8w4t:A (2.199) BS02 VZF 3.1.4.35 GO:0004114 ... O76074 37918035
    809005 8w4u:A (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    809006 8w4u:A (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    809007 8w4u:B (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    809008 8w4u:B (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    809009 8w4u:D (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    809010 8w4u:D (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    809011 8w4u:G (3.3) BS01 9MF ? GO:0005216 ... O43526 37857637
    809012 8w4u:G (3.3) BS02 PIO ? GO:0005216 ... O43526 37857637
    809013 8w4v:A (1.81) BS01 Q9O 3.6.4.10 GO:0005524 ... P07900 38665669
    809014 8w53:A (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    809015 8w53:B (2.42816) BS01 UDP 2.4.1.- GO:0000166 ... B6EWZ1 38816433
    809016 8w5k:F (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    809017 8w5k:I (3.6) BS01 46E ? GO:0005515 ... P23644 38360717
    809018 8w5z:A (1.55) BS01 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809019 8w5z:A (1.55) BS02 A3P 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809020 8w5z:A (1.55) BS03 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809021 8w5z:A (1.55) BS04 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809022 8w5z:A (1.55) BS05 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809023 8w5z:A (1.55) BS06 1PS 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809024 8w5z:C (1.55) BS01 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809025 8w5z:C (1.55) BS02 peptide 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809026 8w5z:C (1.55) BS03 A3P 2.8.2.20 GO:0006478 ... B7Q097 38354785
    809027 8w6a:A (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    809028 8w6a:B (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    809029 8w6a:D (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    809030 8w6a:G (1.53) BS01 peptide N/A GO:0000045 ... O95166 38437556
    809031 8w6a:G (1.53) BS02 peptide N/A GO:0000045 ... O95166 38437556
    809032 8w6c:A (2.7) BS01 NA ? GO:0005515 ... Q13183 38552027
    809033 8w6c:A (2.7) BS02 NA ? GO:0005515 ... Q13183 38552027
    809034 8w6c:A (2.7) BS03 Y01 ? GO:0005515 ... Q13183 38552027
    809035 8w6c:B (2.7) BS01 Y01 ? GO:0005515 ... Q13183 38552027
    809036 8w6c:B (2.7) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    809037 8w6c:B (2.7) BS03 NA ? GO:0005515 ... Q13183 38552027
    809038 8w6c:B (2.7) BS04 NA ? GO:0005515 ... Q13183 38552027
    809039 8w6d:A (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    809040 8w6d:A (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    809041 8w6d:B (2.5) BS01 NA ? GO:0005515 ... Q13183 38552027
    809042 8w6d:B (2.5) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    809043 8w6g:A (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    809044 8w6g:A (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    809045 8w6g:B (3.3) BS01 VIJ ? GO:0005515 ... Q13183 38552027
    809046 8w6g:B (3.3) BS02 Y01 ? GO:0005515 ... Q13183 38552027
    809047 8w6h:A (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    809048 8w6h:A (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    809049 8w6h:A (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    809050 8w6h:B (3.1) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    809051 8w6h:B (3.1) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    809052 8w6h:B (3.1) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    809053 8w6i:B (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    809054 8w6i:B (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    809055 8w6i:D (3.7) BS01 AGS ? GO:0000917 ... P0A9R7 N/A
    809056 8w6i:D (3.7) BS02 AGS ? GO:0000917 ... P0A9R7 N/A
    809057 8w6j:B (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    809058 8w6j:B (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    809059 8w6j:D (3.4) BS01 ATP ? GO:0000917 ... P0A9R7 N/A
    809060 8w6j:D (3.4) BS02 ATP ? GO:0000917 ... P0A9R7 N/A
    809061 8w6n:A (3.2) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    809062 8w6n:B (3.2) BS01 SO4 ? GO:0005886 ... Q9BZW2 38552027
    809063 8w6o:A (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    809064 8w6o:A (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    809065 8w6o:A (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    809066 8w6o:B (2.9) BS01 NA ? GO:0005886 ... Q9BZW2 38552027
    809067 8w6o:B (2.9) BS02 NA ? GO:0005886 ... Q9BZW2 38552027
    809068 8w6o:B (2.9) BS03 CLR ? GO:0005886 ... Q9BZW2 38552027
    809069 8w6p:A (1.91) BS01 FUC 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809070 8w6p:A (1.91) BS02 YA4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809071 8w6p:A (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809072 8w6p:A (1.91) BS04 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809073 8w6p:B (1.91) BS01 PO4 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809074 8w6p:B (1.91) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809075 8w6p:B (1.91) BS03 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809076 8w6r:A (1.95) BS01 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809077 8w6r:A (1.95) BS02 ZN 3.1.4.-
    3.6.1.15    		 GO:0004767 ... P70158 37890481
    809078 8w6v:A (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    809079 8w6v:B (1.8) BS01 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    809080 8w6x:L (1.04) BS01 NFU 1.12.2.1 GO:0016491 ... P21852 37712026
    809081 8w6x:L (1.04) BS02 MG 1.12.2.1 GO:0016491 ... P21852 37712026
    809082 8w6x:L (1.04) BS03 SF4 1.12.2.1 GO:0016491 ... P21852 37712026
    809083 8w6x:S (1.04) BS01 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    809084 8w6x:S (1.04) BS02 SF4 1.12.2.1 GO:0009055 ... P21853 37712026
    809085 8w6x:S (1.04) BS03 F3S 1.12.2.1 GO:0009055 ... P21853 37712026
    809086 8w71:A (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    809087 8w71:A (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    809088 8w71:B (2.121) BS01 ISJ 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    809089 8w71:B (2.121) BS02 MG 5.4.4.2 GO:0006952 ... Q9S7H8 38701037
    809090 8w75:A (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809091 8w75:B (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809092 8w75:C (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809093 8w75:D (2.85) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809094 8w78:A (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809095 8w78:A (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809096 8w78:B (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809097 8w78:B (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809098 8w78:C (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809099 8w78:C (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809100 8w78:D (2.81) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809101 8w78:D (2.81) BS02 AKG 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809102 8w7d:A (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    809103 8w7d:B (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    809104 8w7d:C (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    809105 8w7d:D (2.81) BS01 7TG 2.4.2.14 GO:0000287 ... P0AG16 38051581
    809106 8w7f:A (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809107 8w7f:B (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809108 8w7f:C (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809109 8w7f:D (2.299) BS01 FAD 1.1.99.2 GO:0000166 ... Q9VJ28 37995940
    809110 8w7h:A (1.85) BS01 XUH 2.4.2.1
    2.4.2.44    		 GO:0003824 ... Q8I3X4 38141766
    809111 8w7m:2 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29469 37730685
    809112 8w7m:2 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29469 37730685
    809113 8w7m:3 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P24279 37730685
    809114 8w7m:3 (4.12) BS02 ADP 3.6.4.12 GO:0000727 ... P24279 37730685
    809115 8w7m:3 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P24279 37730685
    809116 8w7m:4 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P30665 37730685
    809117 8w7m:4 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P30665 37730685
    809118 8w7m:4 (4.12) BS03 ZN 3.6.4.12 GO:0000727 ... P30665 37730685
    809119 8w7m:5 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P29496 37730685
    809120 8w7m:5 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P29496 37730685
    809121 8w7m:6 (4.12) BS01 ADP 3.6.4.12 GO:0000727 ... P53091 37730685
    809122 8w7m:6 (4.12) BS02 ZN 3.6.4.12 GO:0000727 ... P53091 37730685
    809123 8w7m:7 (4.12) BS01 dna 3.6.4.12 GO:0000727 ... P38132 37730685
    809124 8w7m:7 (4.12) BS02 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    809125 8w7m:7 (4.12) BS03 AGS 3.6.4.12 GO:0000727 ... P38132 37730685
    809126 8w7m:7 (4.12) BS04 ZN 3.6.4.12 GO:0000727 ... P38132 37730685
    809127 8w87:R (2.8) BS01 B40 ? GO:0001594 ... Q96RJ0 37935377
    809128 8w88:R (2.6) BS01 CLR ? GO:0001594 ... Q96RJ0 37935377
    809129 8w88:R (2.6) BS02 CLR ? GO:0001594 ... Q96RJ0 37935377
    809130 8w88:R (2.6) BS03 UJL ? GO:0001594 ... Q96RJ0 37935377
    809131 8w89:R (3.0) BS01 PEA ? GO:0001594 ... Q96RJ0 37935377
    809132 8w8a:R (2.8) BS01 T5U ? GO:0001594 ... Q96RJ0 37935377
    809133 8w8b:R (3.0) BS01 CLR ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    809134 8w8b:R (3.0) BS02 UJL ? GO:0001586 ... P08908
    P0ABE7    		 37935377
    809135 8w8e:A (3.9) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809136 8w8e:A (3.9) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809137 8w8e:A (3.9) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809138 8w8e:A (3.9) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809139 8w8e:A (3.9) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809140 8w8e:A (3.9) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809141 8w8e:B (3.9) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    809142 8w8e:B (3.9) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    809143 8w8e:B (3.9) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    809144 8w8e:C (3.9) BS01 ZN ? GO:0000428 ... I3LCH3 38816438
    809145 8w8e:E (3.9) BS01 dna ? GO:0001054 ... I3LSI7 38816438
    809146 8w8e:I (3.9) BS01 ZN ? GO:0000428 ... P60899 38816438
    809147 8w8e:I (3.9) BS02 ZN ? GO:0000428 ... P60899 38816438
    809148 8w8e:L (3.9) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38816438
    809149 8w8e:Z (3.9) BS01 dna ? GO:0000122 ... O00267 38816438
    809150 8w8e:a (3.9) BS01 GTP 2.7.7.50
    3.6.1.74    		 GO:0003824 ... O60942 38816438
    809151 8w8f:A (4.0) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809152 8w8f:A (4.0) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809153 8w8f:A (4.0) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809154 8w8f:A (4.0) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809155 8w8f:A (4.0) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809156 8w8f:A (4.0) BS06 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38816438
    809157 8w8f:B (4.0) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    809158 8w8f:B (4.0) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    809159 8w8f:B (4.0) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38816438
    809160 8w8f:C (4.0) BS01 ZN ? GO:0000428 ... I3LCH3 38816438
    809161 8w8f:E (4.0) BS01 dna ? GO:0001054 ... I3LSI7 38816438
    809162 8w8f:I (4.0) BS01 ZN ? GO:0000428 ... P60899 38816438
    809163 8w8f:I (4.0) BS02 ZN ? GO:0000428 ... P60899 38816438
    809164 8w8f:L (4.0) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38816438
    809165 8w8f:Z (4.0) BS01 dna ? GO:0000122 ... O00267 38816438
    809166 8w8k:A (2.25) BS01 TUH 3.6.4.10 GO:0005524 ... P07900 38665669
    809167 8w8k:B (2.25) BS01 TUH 3.6.4.10 GO:0005524 ... P07900 38665669
    809168 8w8n:B (2.693) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    809169 8w8n:C (2.693) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    809170 8w8n:C (2.693) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    809171 8w8n:C (2.693) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    809172 8w8n:D (2.693) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    809173 8w8n:D (2.693) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    809174 8w8n:D (2.693) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    809175 8w8n:D (2.693) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    809176 8w8n:D (2.693) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    809177 8w8n:D (2.693) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    809178 8w8n:D (2.693) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    809179 8w8n:F (2.693) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    809180 8w8n:F (2.693) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    809181 8w8n:F (2.693) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    809182 8w8o:B (2.512) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    809183 8w8o:C (2.512) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    809184 8w8o:C (2.512) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    809185 8w8o:C (2.512) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    809186 8w8o:D (2.512) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    809187 8w8o:D (2.512) BS02 dna N/A GO:0000287 ... Q8RQE8 38990947
    809188 8w8o:D (2.512) BS03 rna N/A GO:0000287 ... Q8RQE8 38990947
    809189 8w8o:D (2.512) BS04 ZN N/A GO:0000287 ... Q8RQE8 38990947
    809190 8w8o:D (2.512) BS05 ZN N/A GO:0000287 ... Q8RQE8 38990947
    809191 8w8o:D (2.512) BS06 MG N/A GO:0000287 ... Q8RQE8 38990947
    809192 8w8o:D (2.512) BS07 MG N/A GO:0000287 ... Q8RQE8 38990947
    809193 8w8o:F (2.512) BS01 dna N/A GO:0003677 ... Q5SKW1 38990947
    809194 8w8o:F (2.512) BS02 dna N/A GO:0003677 ... Q5SKW1 38990947
    809195 8w8o:F (2.512) BS03 MG N/A GO:0003677 ... Q5SKW1 38990947
    809196 8w8p:B (3.165) BS01 MG N/A GO:0000428 ... Q5SHR6 38990947
    809197 8w8p:C (3.165) BS01 dna N/A GO:0000428 ... Q8RQE9 38990947
    809198 8w8p:C (3.165) BS02 dna N/A GO:0000428 ... Q8RQE9 38990947
    809199 8w8p:C (3.165) BS03 rna N/A GO:0000428 ... Q8RQE9 38990947
    809200 8w8p:D (3.165) BS01 dna N/A GO:0000287 ... Q8RQE8 38990947
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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