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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    808801 8w1f:I (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    808802 8w1f:I (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    808803 8w1f:I (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    808804 8w1f:J (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    808805 8w1f:J (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    808806 8w1f:J (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    808807 8w1f:K (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    808808 8w1f:K (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    808809 8w1f:K (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    808810 8w1f:L (3.0) BS01 MG ? GO:0004322 ... Q9HUT3 38841187
    808811 8w1f:L (3.0) BS02 FE2 ? GO:0004322 ... Q9HUT3 38841187
    808812 8w1f:L (3.0) BS03 FE2 ? GO:0004322 ... Q9HUT3 38841187
    808813 8w1o:K (2.8) BS01 rna 2.7.7.48 GO:0000166 ... W0G557 38614100
    808814 8w1o:K (2.8) BS02 rna 2.7.7.48 GO:0000166 ... W0G557 38614100
    808815 8w1q:A (1.56) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    808816 8w1q:B (1.56) BS01 FE2 N/A GO:0016491 ... A0A0C7AN42 39220707
    808817 8w1v:A (3.0) BS01 A1AE2 N/A GO:0003796 ... P00720
    P07550
    38952152
    808818 8w1v:A (3.0) BS02 AV0 N/A GO:0003796 ... P00720
    P07550
    38952152
    808819 8w1v:B (3.0) BS01 A1AE2 N/A GO:0003796 ... P00720
    P07550
    38952152
    808820 8w1v:B (3.0) BS02 AV0 N/A GO:0003796 ... P00720
    P07550
    38952152
    808821 8w21:A (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    808822 8w21:B (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    808823 8w21:C (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    808824 8w21:E (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    808825 8w21:G (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    808826 8w21:H (2.25) BS01 MG 4.2.1.11 GO:0000015 ... O84591 N/A
    808827 8w2f:M (3.1) BS01 A1AE6 N/A GO:0000502 ... A0A5K1K7U1 39084225
    808828 8w2f:a (3.1) BS01 A1AE6 N/A GO:0000502 ... A0A5K1K7U1 39084225
    808829 8w2l:A (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808830 8w2l:A (2.45) BS02 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808831 8w2l:A (2.45) BS03 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808832 8w2l:B (2.45) BS01 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808833 8w2l:B (2.45) BS02 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808834 8w2l:B (2.45) BS03 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808835 8w2l:C (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808836 8w2l:C (2.45) BS02 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808837 8w2l:C (2.45) BS03 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808838 8w2l:C (2.45) BS04 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808839 8w2l:D (2.45) BS01 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808840 8w2l:D (2.45) BS02 DU0 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808841 8w2l:D (2.45) BS03 CLR 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808842 8w2l:D (2.45) BS04 M05 2.7.11.1 GO:0003674 ... P42212
    Q923J1
    38615321
    808843 8w2o:A (3.49) BS01 rna ? GO:0000243 ... Q00916 38688558
    808844 8w2o:B (3.49) BS01 rna ? GO:0000243 ... Q05900 38688558
    808845 8w2o:B (3.49) BS02 rna ? GO:0000243 ... Q05900 38688558
    808846 8w2o:C (3.49) BS01 rna ? GO:0000243 ... P32605 38688558
    808847 8w2o:D (3.49) BS01 rna ? GO:0000243 ... Q03776 38688558
    808848 8w2o:G (3.49) BS01 rna ? GO:0000243 ... Q03782 38688558
    808849 8w2o:K (3.49) BS01 rna ? GO:0000243 ... P40018 38688558
    808850 8w2o:L (3.49) BS01 rna ? GO:0000243 ... Q02260 38688558
    808851 8w2o:M (3.49) BS01 peptide ? GO:0000243 ... Q06217 38688558
    808852 8w2o:M (3.49) BS02 rna ? GO:0000243 ... Q06217 38688558
    808853 8w2o:N (3.49) BS01 rna ? GO:0000243 ... P43321 38688558
    808854 8w2o:O (3.49) BS01 peptide ? GO:0000243 ... Q12330 38688558
    808855 8w2o:O (3.49) BS02 rna ? GO:0000243 ... Q12330 38688558
    808856 8w2o:P (3.49) BS01 rna ? GO:0000243 ... P54999 38688558
    808857 8w2o:Q (3.49) BS01 peptide ? GO:0000243 ... P40204 38688558
    808858 8w2o:Q (3.49) BS02 rna ? GO:0000243 ... P40204 38688558
    808859 8w2r:A (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    808860 8w2r:A (3.23) BS02 dna ? GO:0003676 ... P12497 38582148
    808861 8w2r:A (3.23) BS03 dna ? GO:0003676 ... P12497 38582148
    808862 8w2r:A (3.23) BS04 dna ? GO:0003676 ... P12497 38582148
    808863 8w2r:A (3.23) BS05 MG ? GO:0003676 ... P12497 38582148
    808864 8w2r:A (3.23) BS06 MG ? GO:0003676 ... P12497 38582148
    808865 8w2r:A (3.23) BS07 ZN ? GO:0003676 ... P12497 38582148
    808866 8w2r:A (3.23) BS08 DLU ? GO:0003676 ... P12497 38582148
    808867 8w2r:C (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    808868 8w2r:D (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    808869 8w2r:D (3.23) BS02 dna ? GO:0003676 ... P12497 38582148
    808870 8w2r:I (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    808871 8w2r:I (3.23) BS02 dna ? GO:0003676 ... P12497 38582148
    808872 8w2r:I (3.23) BS03 dna ? GO:0003676 ... P12497 38582148
    808873 8w2r:I (3.23) BS04 dna ? GO:0003676 ... P12497 38582148
    808874 8w2r:I (3.23) BS05 MG ? GO:0003676 ... P12497 38582148
    808875 8w2r:I (3.23) BS06 MG ? GO:0003676 ... P12497 38582148
    808876 8w2r:I (3.23) BS07 ZN ? GO:0003676 ... P12497 38582148
    808877 8w2r:I (3.23) BS08 DLU ? GO:0003676 ... P12497 38582148
    808878 8w2r:L (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    808879 8w2r:M (3.23) BS01 dna ? GO:0003676 ... P12497 38582148
    808880 8w2r:M (3.23) BS02 dna ? GO:0003676 ... P12497 38582148
    808881 8w34:A (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    808882 8w34:A (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    808883 8w34:A (2.83) BS03 dna ? GO:0003676 ... P12497 38582148
    808884 8w34:A (2.83) BS04 ZN ? GO:0003676 ... P12497 38582148
    808885 8w34:A (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    808886 8w34:A (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    808887 8w34:A (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    808888 8w34:C (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    808889 8w34:D (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    808890 8w34:D (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    808891 8w34:I (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    808892 8w34:I (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    808893 8w34:I (2.83) BS03 dna ? GO:0003676 ... P12497 38582148
    808894 8w34:I (2.83) BS04 ZN ? GO:0003676 ... P12497 38582148
    808895 8w34:I (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    808896 8w34:I (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    808897 8w34:I (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    808898 8w34:L (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    808899 8w34:M (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    808900 8w34:M (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    808901 8w35:A (2.61) BS01 rna N/A GO:0046872 ... H9C180 38987591
    808902 8w35:B (2.61) BS01 rna N/A GO:0046872 ... H9C180 38987591
    808903 8w3a:A (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    808904 8w3a:A (1.8) BS02 A1ADT ? GO:0015671 ... A9DF82 38959524
    808905 8w3a:B (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    808906 8w3a:B (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    808907 8w3a:C (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    808908 8w3a:C (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    808909 8w3a:D (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    808910 8w3a:D (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    808911 8w3w:A (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    808912 8w3w:B (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    808913 8w3w:C (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    808914 8w3w:D (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    808915 8w3x:A (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    808916 8w3x:B (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    808917 8w3x:C (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    808918 8w3x:D (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    808919 8w41:A (3.54) BS01 ADP ? GO:0000146 ... Q9UM54 38331992
    808920 8w41:B (3.54) BS01 CA ? GO:0000086 ... P0DP26 38331992
    808921 8w41:B (3.54) BS02 CA ? GO:0000086 ... P0DP26 38331992
    808922 8w41:B (3.54) BS03 CA ? GO:0000086 ... P0DP26 38331992
    808923 8w41:B (3.54) BS04 CA ? GO:0000086 ... P0DP26 38331992
    808924 8w4b:A (2.152) BS01 STR N/A GO:0005634 ... Q6DCU6 38965213
    808925 8w4c:A (2.676) BS01 STR N/A GO:0005634 ... Q6DCU6 38965213
    808926 8w4o:5 (3.23) BS01 ET4 ? GO:0009416 ... B5YLU3 38071196
    808927 8w4o:5 (3.23) BS02 A86 ? GO:0009416 ... B5YLU3 38071196
    808928 8w4o:5 (3.23) BS03 CLA ? GO:0009416 ... B5YLU3 38071196
    808929 8w4o:5 (3.23) BS04 CLA ? GO:0009416 ... B5YLU3 38071196
    808930 8w4o:5 (3.23) BS05 CLA ? GO:0009416 ... B5YLU3 38071196
    808931 8w4o:5 (3.23) BS06 CLA ? GO:0009416 ... B5YLU3 38071196
    808932 8w4o:5 (3.23) BS07 CLA ? GO:0009416 ... B5YLU3 38071196
    808933 8w4o:5 (3.23) BS08 CLA ? GO:0009416 ... B5YLU3 38071196
    808934 8w4o:5 (3.23) BS09 CLA ? GO:0009416 ... B5YLU3 38071196
    808935 8w4o:5 (3.23) BS10 CLA ? GO:0009416 ... B5YLU3 38071196
    808936 8w4o:5 (3.23) BS11 CLA ? GO:0009416 ... B5YLU3 38071196
    808937 8w4o:6 (3.23) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    808938 8w4o:6 (3.23) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    808939 8w4o:6 (3.23) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    808940 8w4o:6 (3.23) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    808941 8w4o:6 (3.23) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    808942 8w4o:6 (3.23) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    808943 8w4o:6 (3.23) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    808944 8w4o:6 (3.23) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    808945 8w4o:6 (3.23) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    808946 8w4o:6 (3.23) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    808947 8w4o:6 (3.23) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    808948 8w4o:6 (3.23) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    808949 8w4o:6 (3.23) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    808950 8w4o:6 (3.23) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    808951 8w4o:6 (3.23) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    808952 8w4o:6 (3.23) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    808953 8w4o:6 (3.23) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    808954 8w4o:7 (3.23) BS01 A86 N/A GO:0009765 ... N/A 38071196
    808955 8w4o:7 (3.23) BS02 A86 N/A GO:0009765 ... N/A 38071196
    808956 8w4o:7 (3.23) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    808957 8w4o:7 (3.23) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    808958 8w4o:7 (3.23) BS05 CLA N/A GO:0009765 ... N/A 38071196
    808959 8w4o:7 (3.23) BS06 CLA N/A GO:0009765 ... N/A 38071196
    808960 8w4o:7 (3.23) BS07 CLA N/A GO:0009765 ... N/A 38071196
    808961 8w4o:7 (3.23) BS08 CLA N/A GO:0009765 ... N/A 38071196
    808962 8w4o:7 (3.23) BS09 CLA N/A GO:0009765 ... N/A 38071196
    808963 8w4o:7 (3.23) BS10 CLA N/A GO:0009765 ... N/A 38071196
    808964 8w4o:7 (3.23) BS11 CLA N/A GO:0009765 ... N/A 38071196
    808965 8w4o:7 (3.23) BS12 CLA N/A GO:0009765 ... N/A 38071196
    808966 8w4o:7 (3.23) BS13 CLA N/A GO:0009765 ... N/A 38071196
    808967 8w4o:7 (3.23) BS14 CLA N/A GO:0009765 ... N/A 38071196
    808968 8w4o:7 (3.23) BS15 CLA N/A GO:0009765 ... N/A 38071196
    808969 8w4o:7 (3.23) BS16 CLA N/A GO:0009765 ... N/A 38071196
    808970 8w4o:7 (3.23) BS17 CLA N/A GO:0009765 ... N/A 38071196
    808971 8w4o:7 (3.23) BS18 CLA N/A GO:0009765 ... N/A 38071196
    808972 8w4p:3 (3.48) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    808973 8w4p:3 (3.48) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    808974 8w4p:3 (3.48) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    808975 8w4p:3 (3.48) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    808976 8w4p:3 (3.48) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    808977 8w4p:3 (3.48) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    808978 8w4p:3 (3.48) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    808979 8w4p:3 (3.48) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    808980 8w4p:3 (3.48) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    808981 8w4p:3 (3.48) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    808982 8w4p:3 (3.48) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    808983 8w4p:p (3.48) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    808984 8w4p:p (3.48) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    808985 8w4p:p (3.48) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    808986 8w4p:p (3.48) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    808987 8w4p:p (3.48) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    808988 8w4p:p (3.48) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    808989 8w4p:p (3.48) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    808990 8w4p:p (3.48) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    808991 8w4p:p (3.48) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    808992 8w4p:p (3.48) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    808993 8w4q:A (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    808994 8w4q:A (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    808995 8w4q:B (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    808996 8w4q:B (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    808997 8w4r:A (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    808998 8w4r:A (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    808999 8w4r:B (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    809000 8w4r:B (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218