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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    808201 8vnp:A (1.79) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808202 8vnp:A (1.79) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808203 8vnp:A (1.79) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808204 8vnp:B (1.79) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808205 8vnp:B (1.79) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808206 8vnp:B (1.79) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808207 8vnp:B (1.79) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808208 8vnq:A (1.93) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808209 8vnq:A (1.93) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808210 8vnq:A (1.93) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808211 8vnq:A (1.93) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808212 8vnq:B (1.93) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808213 8vnq:B (1.93) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808214 8vnq:B (1.93) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808215 8vnq:B (1.93) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808216 8vnr:A (1.98) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808217 8vnr:A (1.98) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808218 8vnr:A (1.98) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808219 8vnr:A (1.98) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808220 8vnr:B (1.98) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808221 8vnr:B (1.98) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808222 8vnr:B (1.98) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808223 8vnr:B (1.98) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808224 8vns:A (2.11) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808225 8vns:A (2.11) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808226 8vns:A (2.11) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808227 8vns:A (2.11) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808228 8vns:B (2.11) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808229 8vns:B (2.11) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808230 8vns:B (2.11) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808231 8vns:B (2.11) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808232 8vnt:A (1.62) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808233 8vnt:A (1.62) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808234 8vnt:A (1.62) BS03 dna N/A GO:0004519 ... Q94702 N/A
    808235 8vnt:A (1.62) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808236 8vnt:A (1.62) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    808237 8vnt:B (1.62) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808238 8vnt:B (1.62) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808239 8vnt:B (1.62) BS03 dna N/A GO:0004519 ... Q94702 N/A
    808240 8vnt:B (1.62) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808241 8vnt:B (1.62) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    808242 8vnu:A (2.2) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808243 8vnu:A (2.2) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808244 8vnu:A (2.2) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808245 8vnu:A (2.2) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808246 8vnu:B (2.2) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808247 8vnu:B (2.2) BS02 dna N/A GO:0004519 ... Q94702 N/A
    808248 8vnu:B (2.2) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    808249 8vnu:B (2.2) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    808250 8vov:A (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    808251 8vov:A (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    808252 8vov:B (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    808253 8vov:B (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    808254 8vov:C (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    808255 8vov:C (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    808256 8vov:D (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    808257 8vov:D (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    808258 8vov:E (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    808259 8vov:E (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    808260 8vov:F (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    808261 8vov:F (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    808262 8vpo:A (1.66) BS01 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    808263 8vpo:A (1.66) BS02 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    808264 8vq1:A (1.3) BS01 QCV ? GO:0006355 ... Q4K977 38536910
    808265 8vq3:A (1.84) BS01 A1AC4 2.7.11.22 GO:0000082 ... P24941 38293178
    808266 8vq4:A (1.9) BS01 A1AC5 2.7.11.22 GO:0000082 ... P24941 38293178
    808267 8vqr:A (2.565) BS01 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    808268 8vqr:A (2.565) BS02 BMA 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    808269 8vqr:A (2.565) BS03 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    808270 8vqr:A (2.565) BS04 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    808271 8vqr:B (2.565) BS01 MAN 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    808272 8vqr:B (2.565) BS02 FUC 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    808273 8vqr:B (2.565) BS03 ZN 3.4.-.-
    3.4.17.-
    3.4.17.23    		 GO:0006508 ... B4XEP4
    Q9BYF1    		 N/A
    808274 8vqw:C (2.2) BS01 COA 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808275 8vqw:D (2.2) BS01 COA 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808276 8vqz:A (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808277 8vqz:B (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808278 8vqz:C (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808279 8vqz:D (2.05) BS01 C5P 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808280 8vr0:A (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808281 8vr0:B (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808282 8vr0:C (2.25) BS01 5GP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808283 8vr1:A (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808284 8vr1:B (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808285 8vr1:C (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808286 8vr1:D (2.05) BS01 CTP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    808287 8vr2:A (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    808288 8vr2:A (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    808289 8vr2:B (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    808290 8vr2:B (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    808291 8vr2:C (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    808292 8vr2:C (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    808293 8vr2:D (1.8) BS01 NAD ? GO:0000166 ... Q1QD53 N/A
    808294 8vr2:D (1.8) BS02 UDP ? GO:0000166 ... Q1QD53 N/A
    808295 8vr3:B (2.0) BS01 A1ADI ? GO:0000271 ... Q1QD52 N/A
    808296 8vr5:A (2.2) BS01 PMP ? GO:0000271 ... Q1QD52 N/A
    808297 8vr5:A (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    808298 8vr5:B (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    808299 8vr5:B (2.2) BS02 A1ADI ? GO:0000271 ... Q1QD52 N/A
    808300 8vr5:C (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    808301 8vr5:C (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    808302 8vr5:D (2.2) BS01 PDG ? GO:0000271 ... Q1QD52 N/A
    808303 8vr5:D (2.2) BS02 PDG ? GO:0000271 ... Q1QD52 N/A
    808304 8vr6:A (1.9) BS01 5NG ? GO:0016740 ... Q1QD51 N/A
    808305 8vr7:A (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    808306 8vr7:A (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    808307 8vr7:B (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    808308 8vr7:B (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    808309 8vr7:B (1.9) BS03 EP1 ? GO:0016740 ... Q1QD51 N/A
    808310 8vr7:B (1.9) BS04 PAP ? GO:0016740 ... Q1QD51 N/A
    808311 8vr7:C (1.9) BS01 COA ? GO:0016740 ... Q1QD51 N/A
    808312 8vr7:C (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    808313 8vr7:D (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    808314 8vr7:D (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    808315 8vr7:E (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    808316 8vr7:E (1.9) BS02 ACO ? GO:0016740 ... Q1QD51 N/A
    808317 8vr7:E (1.9) BS03 PAP ? GO:0016740 ... Q1QD51 N/A
    808318 8vr7:F (1.9) BS01 ACO ? GO:0016740 ... Q1QD51 N/A
    808319 8vr7:F (1.9) BS02 COA ? GO:0016740 ... Q1QD51 N/A
    808320 8vre:A (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    808321 8vre:A (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    808322 8vre:A (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    808323 8vre:B (1.83) BS01 FPK N/A GO:0004735 ... P32322 39133178
    808324 8vre:B (1.83) BS02 NAI N/A GO:0004735 ... P32322 39133178
    808325 8vre:B (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    808326 8vre:C (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    808327 8vre:C (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    808328 8vre:C (1.83) BS03 FPK N/A GO:0004735 ... P32322 39133178
    808329 8vre:D (1.83) BS01 NAI N/A GO:0004735 ... P32322 39133178
    808330 8vre:D (1.83) BS02 FPK N/A GO:0004735 ... P32322 39133178
    808331 8vre:E (1.83) BS01 FPK N/A GO:0004735 ... P32322 39133178
    808332 8vs9:L02 (3.9) BS01 rna ? GO:0000027 ... P60422 38500588
    808333 8vs9:L03 (3.9) BS01 rna ? GO:0000027 ... P60438 38500588
    808334 8vs9:L04 (3.9) BS01 rna ? GO:0003735 ... A1AGK6 38500588
    808335 8vs9:L05 (3.9) BS01 rna ? GO:0000049 ... A0A140N5A3 38500588
    808336 8vs9:L05 (3.9) BS02 rna ? GO:0000049 ... A0A140N5A3 38500588
    808337 8vs9:L05 (3.9) BS03 rna ? GO:0000049 ... A0A140N5A3 38500588
    808338 8vs9:L06 (3.9) BS01 rna ? GO:0002181 ... C3SR17 38500588
    808339 8vs9:L09 (3.9) BS01 rna ? GO:0003735 ... C3SFP2 38500588
    808340 8vs9:L1 (3.9) BS01 rna ? GO:0000049 ... B7MIX0 38500588
    808341 8vs9:L1 (3.9) BS02 rna ? GO:0000049 ... B7MIX0 38500588
    808342 8vs9:L10 (3.9) BS01 rna ? GO:0002181 ... P0A7J3 38500588
    808343 8vs9:L11 (3.9) BS01 rna ? GO:0000027 ... P0A7J7 38500588
    808344 8vs9:L13 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    808345 8vs9:L14 (3.9) BS01 rna ? GO:0003735 ... S1NW45 38500588
    808346 8vs9:L14 (3.9) BS02 rna ? GO:0003735 ... S1NW45 38500588
    808347 8vs9:L15 (3.9) BS01 rna ? GO:0003735 ... A0A037Y8L6 38500588
    808348 8vs9:L16 (3.9) BS01 rna ? GO:0000027 ... P0ADY7 38500588
    808349 8vs9:L16 (3.9) BS02 rna ? GO:0000027 ... P0ADY7 38500588
    808350 8vs9:L16 (3.9) BS03 rna ? GO:0000027 ... P0ADY7 38500588
    808351 8vs9:L17 (3.9) BS01 rna ? GO:0003735 ... C3SR72 38500588
    808352 8vs9:L18 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    808353 8vs9:L18 (3.9) BS02 rna N/A GO:0003735 ... N/A 38500588
    808354 8vs9:L19 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    808355 8vs9:L19 (3.9) BS02 rna N/A GO:0003735 ... N/A 38500588
    808356 8vs9:L20 (3.9) BS01 rna ? GO:0000027 ... B7MAS6 38500588
    808357 8vs9:L21 (3.9) BS01 rna ? GO:0003723 ... C3SSG2 38500588
    808358 8vs9:L22 (3.9) BS01 rna ? GO:0002181 ... P61175 38500588
    808359 8vs9:L23 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    808360 8vs9:L24 (3.9) BS01 rna N/A GO:0003723 ... N/A 38500588
    808361 8vs9:L25 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    808362 8vs9:L25 (3.9) BS02 rna N/A GO:0003735 ... N/A 38500588
    808363 8vs9:L27 (3.9) BS01 rna ? GO:0000027 ... P0A7L8 38500588
    808364 8vs9:L27 (3.9) BS02 rna ? GO:0000027 ... P0A7L8 38500588
    808365 8vs9:L28 (3.9) BS01 rna ? GO:0003735 ... A0A1X3JA73 38500588
    808366 8vs9:L29 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    808367 8vs9:L30 (3.9) BS01 rna ? GO:0003735 ... C3SR32 38500588
    808368 8vs9:L30 (3.9) BS02 rna ? GO:0003735 ... C3SR32 38500588
    808369 8vs9:L31 (3.9) BS01 rna ? GO:0003735 ... C3SIV2 38500588
    808370 8vs9:L32 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    808371 8vs9:L33 (3.9) BS01 rna ? GO:0003735 ... C3SME7 38500588
    808372 8vs9:L34 (3.9) BS01 rna ? GO:0003735 ... B7MGC4 38500588
    808373 8vs9:L35 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 38500588
    808374 8vs9:L36 (3.9) BS01 rna ? GO:0003735 ... A0A0E2L017 38500588
    808375 8vs9:S02 (3.9) BS01 rna ? GO:0003735 ... C3TPN2 38500588
    808376 8vs9:S02 (3.9) BS02 rna ? GO:0003735 ... C3TPN2 38500588
    808377 8vs9:S03 (3.9) BS01 rna ? GO:0003676 ... B7MCS9 38500588
    808378 8vs9:S03 (3.9) BS02 rna ? GO:0003676 ... B7MCS9 38500588
    808379 8vs9:S04 (3.9) BS01 rna ? GO:0000028 ... P0A7V8 38500588
    808380 8vs9:S05 (3.9) BS01 rna ? GO:0000028 ... P0A7W1 38500588
    808381 8vs9:S05 (3.9) BS02 rna ? GO:0000028 ... P0A7W1 38500588
    808382 8vs9:S06 (3.9) BS01 rna ? GO:0002181 ... P02358 38500588
    808383 8vs9:S07 (3.9) BS01 rna ? GO:0000028 ... P02359 38500588
    808384 8vs9:S07 (3.9) BS02 rna ? GO:0000028 ... P02359 38500588
    808385 8vs9:S08 (3.9) BS01 rna N/A GO:0003735 ... N/A 38500588
    808386 8vs9:S09 (3.9) BS01 rna ? GO:0000028 ... C3SRY2 38500588
    808387 8vs9:S10 (3.9) BS01 rna N/A GO:0003723 ... N/A 38500588
    808388 8vs9:S11 (3.9) BS01 rna ? GO:0003735 ... B7MCR3 38500588
    808389 8vs9:S12 (3.9) BS01 rna ? GO:0000049 ... P0A7S3 38500588
    808390 8vs9:S13 (3.9) BS01 rna ? GO:0000049 ... A0A7U9IV78 38500588
    808391 8vs9:S13 (3.9) BS02 rna ? GO:0000049 ... A0A7U9IV78 38500588
    808392 8vs9:S14 (3.9) BS01 rna ? GO:0003735 ... A0A2X1PQW4 38500588
    808393 8vs9:S15 (3.9) BS01 rna ? GO:0000028 ... C3SSQ7 38500588
    808394 8vs9:S15 (3.9) BS02 rna ? GO:0000028 ... C3SSQ7 38500588
    808395 8vs9:S16 (3.9) BS01 rna ? GO:0000028 ... C3SYP2 38500588
    808396 8vs9:S17 (3.9) BS01 rna ? GO:0000028 ... C3SQY7 38500588
    808397 8vs9:S18 (3.9) BS01 rna ? GO:0003735 ... A0A0E2KXL3 38500588
    808398 8vs9:S19 (3.9) BS01 rna N/A GO:0003723 ... N/A 38500588
    808399 8vs9:S19 (3.9) BS02 rna N/A GO:0003723 ... N/A 38500588
    808400 8vs9:S20 (3.9) BS01 rna ? GO:0000028 ... C3TRH7 38500588
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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