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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    807801 8vkc:BBB (2.03) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    807802 8vkc:BBB (2.03) BS02 NPO N/A GO:0004601 ... Q9NAV8 38959050
    807803 8vkd:AAA (1.4) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    807804 8vkd:AAA (1.4) BS02 4NC N/A GO:0004601 ... Q9NAV8 38959050
    807805 8vkd:BBB (1.4) BS01 HEM N/A GO:0004601 ... Q9NAV8 38959050
    807806 8vkd:BBB (1.4) BS02 4NC N/A GO:0004601 ... Q9NAV8 38959050
    807807 8vkf:A (1.7) BS01 HEM ? GO:0004497 ... Q2IU02 N/A
    807808 8vkf:A (1.7) BS02 LVK ? GO:0004497 ... Q2IU02 N/A
    807809 8vkj:A (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    807810 8vkj:B (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    807811 8vkt:A (1.398) BS01 ZN 3.5.1.18 GO:0006526 ... A0A1S8KJG1 38740150
    807812 8vkt:A (1.398) BS02 ZN 3.5.1.18 GO:0006526 ... A0A1S8KJG1 38740150
    807813 8vku:A (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807814 8vku:B (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807815 8vku:C (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807816 8vku:D (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807817 8vku:E (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807818 8vku:F (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807819 8vl0:A (1.837) BS01 LVC ? GO:0004497 ... Q2IU02 N/A
    807820 8vl0:A (1.837) BS02 HEM ? GO:0004497 ... Q2IU02 N/A
    807821 8vl7:A (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807822 8vl7:A (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807823 8vl7:A (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807824 8vl7:B (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807825 8vl7:B (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807826 8vl7:B (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807827 8vl7:C (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807828 8vl7:C (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807829 8vl7:C (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807830 8vl7:D (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807831 8vl7:D (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807832 8vl7:D (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807833 8vl7:E (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807834 8vl7:E (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807835 8vl7:E (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807836 8vl7:F (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807837 8vl7:F (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807838 8vl7:F (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807839 8vl7:G (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807840 8vl7:G (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807841 8vl7:G (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807842 8vl7:H (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807843 8vl7:H (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807844 8vl7:H (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    807845 8vl8:A (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    807846 8vl8:B (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    807847 8vl8:C (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    807848 8vl8:D (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    807849 8vl8:E (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    807850 8vl9:D (2.5) BS01 A1ACI 1.13.11.20 GO:0000097 ... Q16878 N/A
    807851 8vl9:D (2.5) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 N/A
    807852 8vlb:D (2.9) BS01 3JF 1.13.11.20 GO:0000097 ... Q16878 N/A
    807853 8vlb:D (2.9) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 N/A
    807854 8vlg:A (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    807855 8vlg:A (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 N/A
    807856 8vlg:B (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 N/A
    807857 8vlg:B (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 N/A
    807858 8vli:A (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    807859 8vli:A (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 N/A
    807860 8vli:B (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    807861 8vli:B (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 N/A
    807862 8vlq:A (2.07) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    807863 8vlq:A (2.07) BS02 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    807864 8vlq:A (2.07) BS03 A1AFY 1.1.1.88 GO:0004420 ... P13702 38327055
    807865 8vlq:A (2.07) BS04 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    807866 8vlq:A (2.07) BS05 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    807867 8vlq:B (2.07) BS01 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    807868 8vlq:B (2.07) BS02 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    807869 8vlq:B (2.07) BS03 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    807870 8vlq:B (2.07) BS04 MEV 1.1.1.88 GO:0004420 ... P13702 38327055
    807871 8vls:A (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807872 8vls:B (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807873 8vls:C (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807874 8vls:D (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807875 8vls:E (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807876 8vls:F (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807877 8vls:G (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807878 8vls:H (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807879 8vls:I (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807880 8vls:J (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807881 8vls:K (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807882 8vls:L (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    807883 8vlu:A (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    807884 8vlu:B (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 N/A
    807885 8vlx:A (2.6) BS01 A1ACS ? GO:0000132 ... P42858 N/A
    807886 8vlx:B (2.6) BS01 A1ACS ? GO:0003674 ... P23610 N/A
    807887 8vm2:A (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    807888 8vm2:A (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    807889 8vm2:A (1.74) BS03 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    807890 8vm2:A (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    807891 8vm2:B (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    807892 8vm2:B (1.74) BS02 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    807893 8vm2:B (1.74) BS03 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    807894 8vm2:B (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    807895 8vm2:C (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    807896 8vm2:C (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    807897 8vmo:A (1.68) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807898 8vmo:A (1.68) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807899 8vmo:A (1.68) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807900 8vmo:A (1.68) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807901 8vmo:B (1.68) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807902 8vmo:B (1.68) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807903 8vmo:B (1.68) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807904 8vmo:B (1.68) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807905 8vmp:A (1.45) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807906 8vmp:A (1.45) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807907 8vmp:A (1.45) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807908 8vmp:A (1.45) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807909 8vmp:B (1.45) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807910 8vmp:B (1.45) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807911 8vmp:B (1.45) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807912 8vmp:B (1.45) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807913 8vmq:A (1.48) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807914 8vmq:A (1.48) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807915 8vmq:A (1.48) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807916 8vmq:A (1.48) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807917 8vmq:B (1.48) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807918 8vmq:B (1.48) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807919 8vmq:B (1.48) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807920 8vmq:B (1.48) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807921 8vmr:A (1.5) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807922 8vmr:A (1.5) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807923 8vmr:A (1.5) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807924 8vmr:A (1.5) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807925 8vmr:B (1.5) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807926 8vmr:B (1.5) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807927 8vmr:B (1.5) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807928 8vmr:B (1.5) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807929 8vms:A (1.42) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807930 8vms:A (1.42) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807931 8vms:A (1.42) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807932 8vms:A (1.42) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807933 8vms:B (1.42) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807934 8vms:B (1.42) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807935 8vms:B (1.42) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807936 8vms:B (1.42) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807937 8vmt:A (1.48) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807938 8vmt:A (1.48) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807939 8vmt:A (1.48) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807940 8vmt:A (1.48) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807941 8vmt:B (1.48) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807942 8vmt:B (1.48) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807943 8vmt:B (1.48) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807944 8vmt:B (1.48) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807945 8vmu:A (1.52) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807946 8vmu:A (1.52) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807947 8vmu:A (1.52) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807948 8vmu:A (1.52) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807949 8vmu:B (1.52) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807950 8vmu:B (1.52) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807951 8vmu:B (1.52) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807952 8vmu:B (1.52) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807953 8vmv:A (1.59) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807954 8vmv:A (1.59) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807955 8vmv:A (1.59) BS03 dna N/A GO:0004519 ... Q94702 N/A
    807956 8vmv:A (1.59) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807957 8vmv:A (1.59) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    807958 8vmv:B (1.59) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807959 8vmv:B (1.59) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807960 8vmv:B (1.59) BS03 dna N/A GO:0004519 ... Q94702 N/A
    807961 8vmv:B (1.59) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807962 8vmv:B (1.59) BS05 ZN N/A GO:0004519 ... Q94702 N/A
    807963 8vmw:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807964 8vmw:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807965 8vmw:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807966 8vmw:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807967 8vmw:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807968 8vmw:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807969 8vmw:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807970 8vmw:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807971 8vmx:A (1.45) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807972 8vmx:A (1.45) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807973 8vmx:A (1.45) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807974 8vmx:A (1.45) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807975 8vmx:B (1.45) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807976 8vmx:B (1.45) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807977 8vmx:B (1.45) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807978 8vmx:B (1.45) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807979 8vmy:A (1.53) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807980 8vmy:A (1.53) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807981 8vmy:A (1.53) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807982 8vmy:A (1.53) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807983 8vmy:B (1.53) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807984 8vmy:B (1.53) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807985 8vmy:B (1.53) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807986 8vmy:B (1.53) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807987 8vmz:A (1.57) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807988 8vmz:A (1.57) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807989 8vmz:A (1.57) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807990 8vmz:A (1.57) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807991 8vmz:B (1.57) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807992 8vmz:B (1.57) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807993 8vmz:B (1.57) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807994 8vmz:B (1.57) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807995 8vn0:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    807996 8vn0:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    807997 8vn0:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 N/A
    807998 8vn0:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 N/A
    807999 8vn0:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 N/A
    808000 8vn0:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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