Home Research COVID-19 Services Publications People Teaching Job Opening News Forum --> -->
Online Services

●I-TASSER ●I-TASSER-MTD ●C-I-TASSER ●CR-I-TASSER ●QUARK ●C-QUARK ●LOMETS ●MUSTER ●CEthreader ●SEGMER ●DeepFold ●DeepFoldRNA ●FoldDesign ●COFACTOR ●COACH ●MetaGO ●TripletGO ●IonCom ●FG-MD ●ModRefiner ●REMO ●DEMO ●DEMO-EM ●DMFold ●SPRING ●COTH ●Threpp ●PEPPI ●BSpred ●ANGLOR ●EDock ●BSP-SLIM ●SAXSTER ●FUpred ●ThreaDom ●ThreaDomEx ●EvoDesign ●BindProf ●BindProfX ●SSIPe ●GPCR-I-TASSER ●MAGELLAN ●ResQ ●STRUM ●DAMpred

●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

    • Sort results by
    << < 4027 4028 4029 4030 4031 4032 4033 4034 4035 4036 4037 4038 4039 4040 4041 4042 4043 4044 4045 4046 4047 > >>
    Go to page

    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    807201 8v9j:C (3.1) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    807202 8v9j:D (3.1) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    807203 8v9j:E (3.1) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    807204 8v9j:F (3.1) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    807205 8v9j:F (3.1) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    807206 8v9j:G (3.1) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    807207 8v9j:H (3.1) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    807208 8v9j:I (3.1) BS01 rna ? GO:0003735 ... A0QS62 38355796
    807209 8v9j:J (3.1) BS01 rna ? GO:0003735 ... A0QS45 38355796
    807210 8v9j:K (3.1) BS01 rna ? GO:0000049 ... A0QS46 38355796
    807211 8v9j:L (3.1) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    807212 8v9j:M (3.1) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    807213 8v9j:M (3.1) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    807214 8v9j:N (3.1) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    807215 8v9j:O (3.1) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    807216 8v9j:P (3.1) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    807217 8v9j:Q (3.1) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    807218 8v9j:Q (3.1) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    807219 8v9j:R (3.1) BS01 rna ? GO:0003735 ... A0QV42 38355796
    807220 8v9j:R (3.1) BS02 rna ? GO:0003735 ... A0QV42 38355796
    807221 8v9j:S (3.1) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    807222 8v9j:T (3.1) BS01 rna ? GO:0003723 ... A0R151 38355796
    807223 8v9j:U (3.1) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    807224 8v9j:V (3.1) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    807225 8v9j:W (3.1) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    807226 8v9j:X (3.1) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    807227 8v9j:X (3.1) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    807228 8v9j:Y (3.1) BS01 rna ? GO:0003735 ... A0R150 38355796
    807229 8v9j:Z (3.1) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    807230 8v9j:c (3.1) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    807231 8v9j:d (3.1) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    807232 8v9j:e (3.1) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    807233 8v9j:f (3.1) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    807234 8v9j:g (3.1) BS01 rna ? GO:0000028 ... A0QS97 38355796
    807235 8v9j:h (3.1) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    807236 8v9j:i (3.1) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    807237 8v9j:j (3.1) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    807238 8v9j:k (3.1) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    807239 8v9j:l (3.1) BS01 rna ? GO:0000049 ... A0QS96 38355796
    807240 8v9j:m (3.1) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    807241 8v9j:n (3.1) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    807242 8v9j:o (3.1) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    807243 8v9j:o (3.1) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    807244 8v9j:p (3.1) BS01 rna ? GO:0003735 ... A0QV37 38355796
    807245 8v9j:q (3.1) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    807246 8v9j:r (3.1) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    807247 8v9j:s (3.1) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    807248 8v9j:t (3.1) BS01 rna ? GO:0003723 ... A0R102 38355796
    807249 8v9k:1 (3.1) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    807250 8v9k:2 (3.1) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    807251 8v9k:2 (3.1) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    807252 8v9k:3 (3.1) BS01 rna ? GO:0003735 ... A0R215 38355796
    807253 8v9k:4 (3.1) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    807254 8v9k:5 (3.1) BS01 rna ? GO:0003735 ... A0QS39 38355796
    807255 8v9k:5 (3.1) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    807256 8v9k:6 (3.1) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    807257 8v9k:7 (3.1) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    807258 8v9k:8 (3.1) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    807259 8v9k:C (3.1) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    807260 8v9k:D (3.1) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    807261 8v9k:E (3.1) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    807262 8v9k:F (3.1) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    807263 8v9k:F (3.1) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    807264 8v9k:G (3.1) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    807265 8v9k:H (3.1) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    807266 8v9k:I (3.1) BS01 rna ? GO:0003735 ... A0QS62 38355796
    807267 8v9k:J (3.1) BS01 rna ? GO:0003735 ... A0QS45 38355796
    807268 8v9k:K (3.1) BS01 rna ? GO:0000049 ... A0QS46 38355796
    807269 8v9k:L (3.1) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    807270 8v9k:M (3.1) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    807271 8v9k:M (3.1) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    807272 8v9k:N (3.1) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    807273 8v9k:O (3.1) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    807274 8v9k:P (3.1) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    807275 8v9k:Q (3.1) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    807276 8v9k:Q (3.1) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    807277 8v9k:R (3.1) BS01 rna ? GO:0003735 ... A0QV42 38355796
    807278 8v9k:R (3.1) BS02 rna ? GO:0003735 ... A0QV42 38355796
    807279 8v9k:S (3.1) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    807280 8v9k:T (3.1) BS01 rna ? GO:0003723 ... A0R151 38355796
    807281 8v9k:U (3.1) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    807282 8v9k:V (3.1) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    807283 8v9k:W (3.1) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    807284 8v9k:X (3.1) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    807285 8v9k:X (3.1) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    807286 8v9k:Y (3.1) BS01 rna ? GO:0003735 ... A0R150 38355796
    807287 8v9k:Z (3.1) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    807288 8v9k:Z (3.1) BS02 ZN ? GO:0003735 ... I7FJ52 38355796
    807289 8v9k:b (3.1) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    807290 8v9k:c (3.1) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    807291 8v9k:d (3.1) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    807292 8v9k:e (3.1) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    807293 8v9k:f (3.1) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    807294 8v9k:f (3.1) BS02 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    807295 8v9k:g (3.1) BS01 rna ? GO:0000028 ... A0QS97 38355796
    807296 8v9k:h (3.1) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    807297 8v9k:i (3.1) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    807298 8v9k:j (3.1) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    807299 8v9k:k (3.1) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    807300 8v9k:l (3.1) BS01 rna ? GO:0000049 ... A0QS96 38355796
    807301 8v9k:m (3.1) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    807302 8v9k:n (3.1) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    807303 8v9k:o (3.1) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    807304 8v9k:o (3.1) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    807305 8v9k:p (3.1) BS01 rna ? GO:0003735 ... A0QV37 38355796
    807306 8v9k:q (3.1) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    807307 8v9k:r (3.1) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    807308 8v9k:s (3.1) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    807309 8v9k:t (3.1) BS01 rna ? GO:0003723 ... A0R102 38355796
    807310 8v9k:z (3.1) BS01 rna ? GO:0001666 ... P9WL63 38355796
    807311 8v9k:z (3.1) BS02 rna ? GO:0001666 ... P9WL63 38355796
    807312 8v9l:1 (3.0) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    807313 8v9l:2 (3.0) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    807314 8v9l:2 (3.0) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    807315 8v9l:3 (3.0) BS01 rna ? GO:0003735 ... A0R215 38355796
    807316 8v9l:4 (3.0) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    807317 8v9l:5 (3.0) BS01 rna ? GO:0003735 ... A0QS39 38355796
    807318 8v9l:5 (3.0) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    807319 8v9l:6 (3.0) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    807320 8v9l:7 (3.0) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    807321 8v9l:8 (3.0) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    807322 8v9l:C (3.0) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    807323 8v9l:D (3.0) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    807324 8v9l:E (3.0) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    807325 8v9l:F (3.0) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    807326 8v9l:F (3.0) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    807327 8v9l:G (3.0) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    807328 8v9l:H (3.0) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    807329 8v9l:I (3.0) BS01 rna ? GO:0003735 ... A0QS62 38355796
    807330 8v9l:J (3.0) BS01 rna ? GO:0003735 ... A0QS45 38355796
    807331 8v9l:L (3.0) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    807332 8v9l:M (3.0) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    807333 8v9l:M (3.0) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    807334 8v9l:N (3.0) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    807335 8v9l:O (3.0) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    807336 8v9l:P (3.0) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    807337 8v9l:Q (3.0) BS01 rna ? GO:0003735 ... I7FGD9 38355796
    807338 8v9l:Q (3.0) BS02 rna ? GO:0003735 ... I7FGD9 38355796
    807339 8v9l:R (3.0) BS01 rna ? GO:0003735 ... A0QV42 38355796
    807340 8v9l:R (3.0) BS02 rna ? GO:0003735 ... A0QV42 38355796
    807341 8v9l:S (3.0) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    807342 8v9l:T (3.0) BS01 rna ? GO:0003723 ... A0R151 38355796
    807343 8v9l:U (3.0) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    807344 8v9l:V (3.0) BS01 rna ? GO:0000027 ... A0QSD3 38355796
    807345 8v9l:W (3.0) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    807346 8v9l:X (3.0) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    807347 8v9l:X (3.0) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    807348 8v9l:Y (3.0) BS01 rna ? GO:0003735 ... A0R150 38355796
    807349 8v9l:Z (3.0) BS01 rna ? GO:0003735 ... I7FJ52 38355796
    807350 8v9l:b (3.0) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    807351 8v9l:c (3.0) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    807352 8v9l:d (3.0) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    807353 8v9l:e (3.0) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    807354 8v9l:f (3.0) BS01 rna ? GO:0003735 ... A0A2U9Q0X2 38355796
    807355 8v9l:g (3.0) BS01 rna ? GO:0000028 ... A0QS97 38355796
    807356 8v9l:h (3.0) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    807357 8v9l:i (3.0) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    807358 8v9l:j (3.0) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    807359 8v9l:k (3.0) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    807360 8v9l:l (3.0) BS01 rna ? GO:0000049 ... A0QS96 38355796
    807361 8v9l:m (3.0) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    807362 8v9l:n (3.0) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    807363 8v9l:o (3.0) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    807364 8v9l:o (3.0) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    807365 8v9l:p (3.0) BS01 rna ? GO:0003735 ... A0QV37 38355796
    807366 8v9l:q (3.0) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    807367 8v9l:r (3.0) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    807368 8v9l:s (3.0) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    807369 8v9l:t (3.0) BS01 rna ? GO:0003723 ... A0R102 38355796
    807370 8v9l:x (3.0) BS01 rna ? GO:0003746 ... A0QS98 38355796
    807371 8v9l:x (3.0) BS02 GDP ? GO:0003746 ... A0QS98 38355796
    807372 8v9m:A (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    807373 8v9m:B (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    807374 8v9m:C (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    807375 8v9p:A (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    807376 8v9p:B (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    807377 8v9p:C (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    807378 8v9p:D (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 N/A
    807379 8v9q:A (2.29) BS01 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    807380 8v9q:A (2.29) BS02 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    807381 8v9q:A (2.29) BS03 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    807382 8v9q:A (2.29) BS04 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    807383 8v9q:B (2.29) BS01 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    807384 8v9q:B (2.29) BS02 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    807385 8v9q:B (2.29) BS03 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    807386 8va1:A (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    807387 8va1:B (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    807388 8va1:C (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    807389 8va1:D (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    807390 8va2:a (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    807391 8va2:a (4.5) BS02 MG 3.6.5.- GO:0000226 ... P68363 N/A
    807392 8va2:b (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 N/A
    807393 8va2:g (4.5) BS01 GDP ? GO:0000070 ... P23258 N/A
    807394 8va2:h (4.5) BS01 GDP ? GO:0000070 ... P23258 N/A
    807395 8vac:A (3.4) BS01 9TP N/A GO:0003677 ... P02768 38852682
    807396 8vae:A (3.7) BS01 SAL N/A GO:0003677 ... P02768 38852682
    807397 8vae:A (3.7) BS02 SAL N/A GO:0003677 ... P02768 38852682
    807398 8vae:A (3.7) BS03 SAL N/A GO:0003677 ... P02768 38852682
    807399 8val:A (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    807400 8val:B (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

    • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218