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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    806201 8uxl:D (3.12) BS01 ZN ? GO:0001666 ... Q92736 N/A
    806202 8uxl:D (3.12) BS02 ATP ? GO:0001666 ... Q92736 N/A
    806203 8uxl:D (3.12) BS03 CA ? GO:0001666 ... Q92736 N/A
    806204 8uxl:D (3.12) BS04 ATP ? GO:0001666 ... Q92736 N/A
    806205 8uxl:I (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    806206 8uxl:I (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    806207 8uxl:I (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    806208 8uxl:I (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    806209 8uxl:J (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    806210 8uxl:J (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    806211 8uxl:J (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    806212 8uxl:J (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    806213 8uxl:K (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    806214 8uxl:K (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    806215 8uxl:K (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    806216 8uxl:K (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    806217 8uxl:L (3.12) BS01 CA ? GO:0000086 ... P0DP23 N/A
    806218 8uxl:L (3.12) BS02 CA ? GO:0000086 ... P0DP23 N/A
    806219 8uxl:L (3.12) BS03 CA ? GO:0000086 ... P0DP23 N/A
    806220 8uxl:L (3.12) BS04 CA ? GO:0000086 ... P0DP23 N/A
    806221 8uxm:A (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    806222 8uxm:A (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    806223 8uxm:A (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    806224 8uxm:B (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    806225 8uxm:B (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    806226 8uxm:B (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    806227 8uxm:C (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    806228 8uxm:C (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    806229 8uxm:C (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    806230 8uxm:D (3.56) BS01 ZN ? GO:0001666 ... Q92736 N/A
    806231 8uxm:D (3.56) BS02 ATP ? GO:0001666 ... Q92736 N/A
    806232 8uxm:D (3.56) BS03 CA ? GO:0001666 ... Q92736 N/A
    806233 8uxm:I (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    806234 8uxm:I (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    806235 8uxm:I (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    806236 8uxm:I (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    806237 8uxm:J (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    806238 8uxm:J (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    806239 8uxm:J (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    806240 8uxm:J (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    806241 8uxm:K (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    806242 8uxm:K (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    806243 8uxm:K (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    806244 8uxm:K (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    806245 8uxm:L (3.56) BS01 CA ? GO:0000086 ... P0DP23 N/A
    806246 8uxm:L (3.56) BS02 CA ? GO:0000086 ... P0DP23 N/A
    806247 8uxm:L (3.56) BS03 CA ? GO:0000086 ... P0DP23 N/A
    806248 8uxm:L (3.56) BS04 CA ? GO:0000086 ... P0DP23 N/A
    806249 8uxu:A (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806250 8uxu:B (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806251 8uxu:C (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806252 8uxu:D (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806253 8uxu:E (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806254 8uxu:F (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806255 8uxu:G (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806256 8uxu:H (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806257 8uxu:I (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806258 8uxu:J (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806259 8uxu:K (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806260 8uxu:L (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806261 8uxu:M (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806262 8uxu:N (3.01) BS01 HBX ? GO:0003824 ... A4LA85 38615726
    806263 8uxw:A (2.7) BS01 ADP ? GO:0003779 ... P32390 38448439
    806264 8uxw:B (2.7) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    806265 8uxw:H (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806266 8uxw:I (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806267 8uxw:M (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806268 8uxw:N (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806269 8uxw:O (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806270 8uxw:P (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806271 8uxw:Q (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806272 8uxw:R (2.7) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806273 8uxx:A (3.2) BS01 ADP ? GO:0003779 ... P32390 38448439
    806274 8uxx:A (3.2) BS02 BEF ? GO:0003779 ... P32390 38448439
    806275 8uxx:B (3.2) BS01 ATP ? GO:0000147 ... Q9UUJ1 38448439
    806276 8uxx:H (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806277 8uxx:I (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806278 8uxx:M (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806279 8uxx:M (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806280 8uxx:N (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806281 8uxx:N (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806282 8uxx:O (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806283 8uxx:O (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806284 8uxx:P (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806285 8uxx:P (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806286 8uxx:Q (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806287 8uxx:Q (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806288 8uxx:R (3.2) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806289 8uxx:R (3.2) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806290 8uy1:A (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    806291 8uy1:B (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    806292 8uy1:C (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    806293 8uy1:D (3.49) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    806294 8uy2:A (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    806295 8uy2:A (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    806296 8uy2:A (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    806297 8uy2:B (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    806298 8uy2:B (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    806299 8uy2:B (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    806300 8uy2:C (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    806301 8uy2:C (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    806302 8uy2:C (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    806303 8uy2:D (2.83) BS01 FAD N/A GO:0004489 ... G0S5U9 38886362
    806304 8uy2:D (2.83) BS02 SAM N/A GO:0004489 ... G0S5U9 38886362
    806305 8uy2:D (2.83) BS03 SAM N/A GO:0004489 ... G0S5U9 38886362
    806306 8uyd:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806307 8uyd:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806308 8uyh:A (2.84) BS01 ANP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    806309 8uyh:B (2.84) BS01 ANP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    806310 8uyh:B (2.84) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    806311 8uyi:A (3.13) BS01 ADP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    806312 8uyi:A (3.13) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    806313 8uyi:B (3.13) BS01 ADP 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    806314 8uyi:B (3.13) BS02 MG 2.7.11.1 GO:0004672 ... E0W1I1 38241364
    806315 8uz0:J (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806316 8uz0:K (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806317 8uz0:L (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806318 8uz0:M (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806319 8uz0:N (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806320 8uz0:O (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806321 8uz0:P (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806322 8uz0:Q (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806323 8uz0:R (2.8) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806324 8uz1:J (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806325 8uz1:J (3.6) BS02 MG 3.6.4.- GO:0001725 ... P68139 38448439
    806326 8uz1:J (3.6) BS03 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806327 8uz1:K (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806328 8uz1:K (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806329 8uz1:L (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806330 8uz1:L (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806331 8uz1:M (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806332 8uz1:M (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806333 8uz1:N (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806334 8uz1:N (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806335 8uz1:O (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806336 8uz1:O (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806337 8uz1:P (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806338 8uz1:P (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806339 8uz1:Q (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806340 8uz1:Q (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806341 8uz1:R (3.6) BS01 ADP 3.6.4.- GO:0001725 ... P68139 38448439
    806342 8uz1:R (3.6) BS02 BEF 3.6.4.- GO:0001725 ... P68139 38448439
    806343 8uz5:A (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806344 8uz5:B (5.9) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806345 8uz6:A (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806346 8uz6:B (7.1) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    806347 8uza:A (3.17) BS01 rna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    806348 8uza:A (3.17) BS02 dna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    806349 8uza:A (3.17) BS03 dna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    806350 8uzb:A (2.63) BS01 rna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    806351 8uzb:A (2.63) BS02 dna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    806352 8uzb:A (2.63) BS03 dna 3.1.-.- GO:0003677 ... A0A150MP45 38781968
    806353 8uzd:A (2.721) BS01 SAH N/A GO:0008168 ... N/A N/A
    806354 8uzd:A (2.721) BS02 CFF N/A GO:0008168 ... N/A N/A
    806355 8uzd:B (2.721) BS01 SAH N/A GO:0008168 ... N/A N/A
    806356 8uzd:B (2.721) BS02 CFF N/A GO:0008168 ... N/A N/A
    806357 8uzh:A (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19
    Q12306
    38485491
    806358 8uzh:A (2.8) BS02 CA ?
    3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19
    Q12306
    38485491
    806359 8uzh:B (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19
    Q12306
    38485491
    806360 8uzj:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806361 8uzj:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806362 8uzj:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806363 8uzj:A (2.3) BS04 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806364 8uzj:A (2.3) BS05 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806365 8uzj:A (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806366 8uzj:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806367 8uzj:B (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806368 8uzj:B (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806369 8uzj:B (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806370 8uzj:B (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806371 8uzj:B (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806372 8uzj:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806373 8uzj:C (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806374 8uzj:C (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806375 8uzj:C (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806376 8uzj:C (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806377 8uzj:C (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806378 8uzj:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806379 8uzj:D (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806380 8uzj:D (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806381 8uzj:D (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806382 8uzj:D (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806383 8uzj:D (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806384 8uzj:E (2.3) BS01 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806385 8uzj:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806386 8uzj:E (2.3) BS03 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806387 8uzj:E (2.3) BS04 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806388 8uzj:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806389 8uzj:E (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    806390 8uzk:A (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806391 8uzk:B (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806392 8uzk:C (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806393 8uzk:D (1.9) BS01 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806394 8uzk:D (1.9) BS02 NAP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806395 8uzm:A (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806396 8uzm:B (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806397 8uzm:C (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806398 8uzm:D (2.2) BS01 NDP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806399 8uzn:A (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    806400 8uzn:B (2.15) BS01 AMP 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218