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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804601 8umy:A (2.83) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    804602 8umy:A (2.83) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    804603 8umy:A (2.83) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    804604 8umy:B (2.83) BS01 dna ? GO:0003677 ... P35250 38669181
    804605 8umy:B (2.83) BS02 AGS ? GO:0003677 ... P35250 38669181
    804606 8umy:B (2.83) BS03 MG ? GO:0003677 ... P35250 38669181
    804607 8umy:B (2.83) BS04 AGS ? GO:0003677 ... P35250 38669181
    804608 8umy:C (2.83) BS01 dna ? GO:0003677 ... P40937 38669181
    804609 8umy:C (2.83) BS02 AGS ? GO:0003677 ... P40937 38669181
    804610 8umy:C (2.83) BS03 AGS ? GO:0003677 ... P40937 38669181
    804611 8umy:D (2.83) BS01 dna ? GO:0003677 ... P35249 38669181
    804612 8umy:D (2.83) BS02 AGS ? GO:0003677 ... P35249 38669181
    804613 8umy:D (2.83) BS03 MG ? GO:0003677 ... P35249 38669181
    804614 8umy:D (2.83) BS04 AGS ? GO:0003677 ... P35249 38669181
    804615 8umy:E (2.83) BS01 dna ? GO:0000731 ... P40938 38669181
    804616 8umy:E (2.83) BS02 AGS ? GO:0000731 ... P40938 38669181
    804617 8umy:E (2.83) BS03 ADP ? GO:0000731 ... P40938 38669181
    804618 8un0:A (3.0) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    804619 8un0:A (3.0) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    804620 8un0:A (3.0) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    804621 8un0:B (3.0) BS01 dna ? GO:0003677 ... P35250 38669181
    804622 8un0:B (3.0) BS02 dna ? GO:0003677 ... P35250 38669181
    804623 8un0:B (3.0) BS03 AGS ? GO:0003677 ... P35250 38669181
    804624 8un0:B (3.0) BS04 AGS ? GO:0003677 ... P35250 38669181
    804625 8un0:C (3.0) BS01 dna ? GO:0003677 ... P40937 38669181
    804626 8un0:C (3.0) BS02 AGS ? GO:0003677 ... P40937 38669181
    804627 8un0:C (3.0) BS03 AGS ? GO:0003677 ... P40937 38669181
    804628 8un0:D (3.0) BS01 dna ? GO:0003677 ... P35249 38669181
    804629 8un0:D (3.0) BS02 AGS ? GO:0003677 ... P35249 38669181
    804630 8un0:D (3.0) BS03 MG ? GO:0003677 ... P35249 38669181
    804631 8un0:D (3.0) BS04 AGS ? GO:0003677 ... P35249 38669181
    804632 8un0:E (3.0) BS01 dna ? GO:0000731 ... P40938 38669181
    804633 8un0:E (3.0) BS02 AGS ? GO:0000731 ... P40938 38669181
    804634 8un0:E (3.0) BS03 ADP ? GO:0000731 ... P40938 38669181
    804635 8un3:A (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    804636 8un3:A (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    804637 8un3:B (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    804638 8un3:B (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    804639 8un3:B (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    804640 8un3:B (2.07) BS04 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    804641 8un3:C (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    804642 8un3:C (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    804643 8un3:D (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    804644 8un3:D (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    804645 8un3:D (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    804646 8un4:A (1.57) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    804647 8un4:A (1.57) BS02 XV3 3.6.5.2 GO:0003924 ... P01116 38229748
    804648 8un5:A (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    804649 8un5:A (1.31) BS02 XQ6 3.6.5.2 GO:0003924 ... P01116 38229748
    804650 8un5:B (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    804651 8un5:B (1.31) BS02 XQ6 3.6.5.2 GO:0003924 ... P01116 38229748
    804652 8un9:A (2.103) BS01 MG ? GO:0003676 ... P50837 38661211
    804653 8un9:B (2.103) BS01 MG ? GO:0003676 ... P50837 38661211
    804654 8unf:A (3.15) BS01 dna ? GO:0003677 ... P04527 38177685
    804655 8unf:B (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804656 8unf:B (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    804657 8unf:B (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804658 8unf:C (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804659 8unf:C (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    804660 8unf:C (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804661 8unf:D (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804662 8unf:D (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    804663 8unf:D (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804664 8unf:E (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804665 8unf:E (3.15) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804666 8unh:B (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    804667 8unh:B (3.21) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804668 8unh:E (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    804669 8unj:B (3.35) BS01 MG ? GO:0003677 ... P35250 38669181
    804670 8unj:B (3.35) BS02 AGS ? GO:0003677 ... P35250 38669181
    804671 8unj:C (3.35) BS01 AGS ? GO:0003677 ... P40937 38669181
    804672 8unj:D (3.35) BS01 AGS ? GO:0003677 ... P35249 38669181
    804673 8unj:E (3.35) BS01 ADP ? GO:0000731 ... P40938 38669181
    804674 8unl:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    804675 8unl:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    804676 8unm:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    804677 8unm:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    804678 8unn:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    804679 8unn:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    804680 8uno:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    804681 8uno:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    804682 8unp:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    804683 8unp:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    804684 8unq:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    804685 8unq:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    804686 8unr:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    804687 8unr:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    804688 8uns:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    804689 8uns:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    804690 8unt:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    804691 8unt:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    804692 8unu:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    804693 8unu:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    804694 8unv:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    804695 8unv:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    804696 8unw:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    804697 8unw:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    804698 8unx:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    804699 8unx:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    804700 8uny:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    804701 8uny:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    804702 8unz:A (3.8) BS01 GTP ? GO:0002862 ... P63092 38480881
    804703 8unz:R (3.8) BS01 G1I ? GO:0004930 ... P07550 38480881
    804704 8uo0:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    804705 8uo0:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    804706 8uo1:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    804707 8uo1:R (3.6) BS01 G1I ? GO:0001540 ... P07550 38480881
    804708 8uo2:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    804709 8uo2:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    804710 8uo3:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    804711 8uo3:A (3.5) BS02 MG ? GO:0002862 ... P63092 38480881
    804712 8uo3:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    804713 8uo4:A (4.0) BS01 GTP ? GO:0002862 ... P63092 38480881
    804714 8uo7:A (2.2) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 38306609
    804715 8uo7:A (2.2) BS02 CA 3.4.21.4 GO:0004175 ... P00760 38306609
    804716 8uo8:A (3.2) BS01 X3U ? GO:0001669 ... Q7L1I2 38898101
    804717 8uo8:A (3.2) BS02 PS1 ? GO:0001669 ... Q7L1I2 38898101
    804718 8uo8:A (3.2) BS03 9Z9 ? GO:0001669 ... Q7L1I2 38898101
    804719 8uo8:A (3.2) BS04 9Z9 ? GO:0001669 ... Q7L1I2 38898101
    804720 8uo8:A (3.2) BS05 43Y ? GO:0001669 ... Q7L1I2 38898101
    804721 8uo8:A (3.2) BS06 Y01 ? GO:0001669 ... Q7L1I2 38898101
    804722 8uo9:A (3.3) BS01 X49 ? GO:0005783 ... Q7L0J3 38898101
    804723 8uo9:A (3.3) BS02 Y01 ? GO:0005783 ... Q7L0J3 38898101
    804724 8uo9:A (3.3) BS03 PS1 ? GO:0005783 ... Q7L0J3 38898101
    804725 8uob:A (2.52) BS01 XB5 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    804726 8uob:A (2.52) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    804727 8uob:A (2.52) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    804728 8uob:A (2.52) BS04 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0006508 ... P0DTD1 38547259
    804729 8uou:A (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804730 8uou:B (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804731 8uoz:A (-1.00) BS01 P4P ? GO:0005886 ... P23895 38806470
    804732 8uoz:B (-1.00) BS01 P4P ? GO:0005886 ... P23895 38806470
    804733 8up3:E (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804734 8up3:F (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804735 8up6:B (1.7) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804736 8up6:C (1.7) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804737 8up8:A (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804738 8up8:B (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804739 8up8:C (1.9) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    804740 8upf:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    804741 8upf:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    804742 8upf:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    804743 8upf:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    804744 8upf:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    804745 8upf:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    804746 8upf:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    804747 8upf:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    804748 8upf:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    804749 8upf:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    804750 8upf:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    804751 8upf:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    804752 8upf:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    804753 8upf:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    804754 8upf:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    804755 8upf:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    804756 8upi:A (1.55) BS01 CA ? GO:0043190 ... A0A7R6WUD2 38696389
    804757 8upi:A (1.55) BS02 SET ? GO:0043190 ... A0A7R6WUD2 38696389
    804758 8upn:A (2.59) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    804759 8upn:A (2.59) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    804760 8upn:A (2.59) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    804761 8upn:A (2.59) BS04 WXU 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    804762 8upo:1 (5.5) BS01 rna ? GO:0002181 ... P61175 39117885
    804763 8upo:9 (5.5) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    804764 8upo:AA (5.5) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    804765 8upo:AA (5.5) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    804766 8upo:AA (5.5) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    804767 8upo:AB (5.5) BS01 dna ? GO:0001073 ... C3SK02 39117885
    804768 8upo:AE (5.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    804769 8upo:AE (5.5) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    804770 8upo:AE (5.5) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    804771 8upo:AE (5.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    804772 8upo:AE (5.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    804773 8upo:AE (5.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    804774 8upo:C (5.5) BS01 rna ? GO:0003735 ... A0A0E2KXL3 39117885
    804775 8upo:E (5.5) BS01 rna ? GO:0000028 ... C3TRH7 39117885
    804776 8upo:F (5.5) BS01 rna ? GO:0005840 ... A0A0E2L2J1 39117885
    804777 8upo:G (5.5) BS01 rna ? GO:0003735 ... C3TPN2 39117885
    804778 8upo:I (5.5) BS01 rna ? GO:0003729 ... B7MCS9 39117885
    804779 8upo:J (5.5) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    804780 8upo:K (5.5) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    804781 8upo:K (5.5) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    804782 8upo:L (5.5) BS01 rna ? GO:0002181 ... P02358 39117885
    804783 8upo:M (5.5) BS01 rna ? GO:0000028 ... P02359 39117885
    804784 8upo:M (5.5) BS02 rna ? GO:0000028 ... P02359 39117885
    804785 8upo:Q (5.5) BS01 rna ? GO:0005840 ... B7MCR3 39117885
    804786 8upo:R (5.5) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    804787 8upo:U (5.5) BS01 rna ? GO:0000028 ... C3SYP2 39117885
    804788 8upo:X (5.5) BS01 rna ? GO:0000049 ... A0A7U9IV78 39117885
    804789 8upo:X (5.5) BS02 rna ? GO:0000049 ... A0A7U9IV78 39117885
    804790 8upo:Y (5.5) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    804791 8upo:b (5.5) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    804792 8upo:b (5.5) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    804793 8upo:c (5.5) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    804794 8upo:g (5.5) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    804795 8upo:h (5.5) BS01 rna ? GO:0000027 ... P60422 39117885
    804796 8upo:j (5.5) BS01 rna ? GO:0000027 ... P60438 39117885
    804797 8upo:l (5.5) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    804798 8upo:m (5.5) BS01 rna ? GO:0005840 ... B7MGC4 39117885
    804799 8upo:o (5.5) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    804800 8upo:p (5.5) BS01 rna ? GO:0002181 ... C3SR17 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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