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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804201 8uhd:V (2.8) BS01 peptide ? GO:0003723 ... Q8WX92 38401543
    804202 8uhe:B (2.78) BS01 M1V ? GO:0009579 ... B4WKI8 38141759
    804203 8uhe:C (2.78) BS01 M1V ? GO:0009579 ... B4WKI4 38141759
    804204 8uhe:C (2.78) BS02 M1V ? GO:0009579 ... B4WKI4 38141759
    804205 8uhe:J (2.78) BS01 M1V ? GO:0009579 ... B4WIH2 38141759
    804206 8uhe:K (2.78) BS01 M1V ? GO:0009579 ... B4WKI6 38141759
    804207 8uhg:A (2.7) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804208 8uhg:A (2.7) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804209 8uhg:A (2.7) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804210 8uhg:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804211 8uhg:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804212 8uhg:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804213 8uhg:B (2.7) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804214 8uhg:B (2.7) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804215 8uhg:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804216 8uhg:C (2.7) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    804217 8uhg:I (2.7) BS01 ZN ? GO:0000428 ... P60899 38401543
    804218 8uhg:I (2.7) BS02 ZN ? GO:0000428 ... P60899 38401543
    804219 8uhg:J (2.7) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    804220 8uhg:L (2.7) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    804221 8uhi:A (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804222 8uhi:A (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804223 8uhi:B (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804224 8uhi:B (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804225 8uhi:C (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804226 8uhi:C (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804227 8uhi:D (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804228 8uhi:D (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804229 8uhi:E (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804230 8uhi:E (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804231 8uhi:F (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804232 8uhi:F (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804233 8uhi:G (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804234 8uhi:G (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804235 8uhi:H (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804236 8uhi:H (2.35) BS02 MG 4.1.1.39 GO:0000287 ... B4WP00 38141759
    804237 8uho:A (2.02) BS01 WTE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38309201
    804238 8uho:B (2.02) BS01 WTE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38309201
    804239 8ui0:A (2.7) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804240 8ui0:A (2.7) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804241 8ui0:A (2.7) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804242 8ui0:A (2.7) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804243 8ui0:A (2.7) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804244 8ui0:A (2.7) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804245 8ui0:B (2.7) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804246 8ui0:B (2.7) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804247 8ui0:B (2.7) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804248 8ui0:C (2.7) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    804249 8ui0:I (2.7) BS01 ZN ? GO:0000428 ... P60899 38401543
    804250 8ui0:I (2.7) BS02 ZN ? GO:0000428 ... P60899 38401543
    804251 8ui0:J (2.7) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    804252 8ui0:L (2.7) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    804253 8ui7:B (4.2) BS01 AGS ? GO:0003689 ... P35250 38871854
    804254 8ui7:B (4.2) BS02 AGS ? GO:0003689 ... P35250 38871854
    804255 8ui7:C (4.2) BS01 AGS ? GO:0003689 ... P40937 38871854
    804256 8ui7:D (4.2) BS01 ADP ? GO:0003689 ... P35249 38871854
    804257 8ui7:E (4.2) BS01 ADP ? GO:0000731 ... P40938 38871854
    804258 8ui8:B (3.1) BS01 AGS ? GO:0003689 ... P35250 38871854
    804259 8ui8:B (3.1) BS02 AGS ? GO:0003689 ... P35250 38871854
    804260 8ui8:C (3.1) BS01 AGS ? GO:0003689 ... P40937 38871854
    804261 8ui8:D (3.1) BS01 ADP ? GO:0003689 ... P35249 38871854
    804262 8ui8:E (3.1) BS01 ADP ? GO:0000731 ... P40938 38871854
    804263 8ui9:B (3.5) BS01 AGS ? GO:0003689 ... P35250 38871854
    804264 8ui9:C (3.5) BS01 AGS ? GO:0003689 ... P40937 38871854
    804265 8ui9:D (3.5) BS01 AGS ? GO:0003689 ... P35249 38871854
    804266 8ui9:E (3.5) BS01 ADP ? GO:0000731 ... P40938 38871854
    804267 8uia:A (1.75) BS01 WTV 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38309201
    804268 8uia:B (1.75) BS01 WTV 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38309201
    804269 8uif:A (2.02) BS01 A1ADS 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38309201
    804270 8uif:B (2.02) BS01 A1ADS 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 38309201
    804271 8uii:A (3.04) BS01 MG ? GO:0003677 ... Q96QE3 38871854
    804272 8uii:A (3.04) BS02 AGS ? GO:0003677 ... Q96QE3 38871854
    804273 8uii:B (3.04) BS01 AGS ? GO:0003689 ... P35250 38871854
    804274 8uii:B (3.04) BS02 AGS ? GO:0003689 ... P35250 38871854
    804275 8uii:C (3.04) BS01 AGS ? GO:0003689 ... P40937 38871854
    804276 8uii:D (3.04) BS01 AGS ? GO:0003689 ... P35249 38871854
    804277 8uii:E (3.04) BS01 ADP ? GO:0000731 ... P40938 38871854
    804278 8uiq:A (2.17) BS01 FAD 1.14.13.114 GO:0071949 ... Q88FY2 38104959
    804279 8uiq:A (2.17) BS02 PYS 1.14.13.114 GO:0071949 ... Q88FY2 38104959
    804280 8uis:A (3.23) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804281 8uis:A (3.23) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804282 8uis:A (3.23) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804283 8uis:A (3.23) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804284 8uis:A (3.23) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804285 8uis:A (3.23) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804286 8uis:B (3.23) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804287 8uis:B (3.23) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804288 8uis:B (3.23) BS03 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804289 8uis:C (3.23) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    804290 8uis:I (3.23) BS01 ZN ? GO:0000428 ... P60899 38401543
    804291 8uis:I (3.23) BS02 ZN ? GO:0000428 ... P60899 38401543
    804292 8uis:J (3.23) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    804293 8uis:L (3.23) BS01 ZN ? GO:0003677 ... A0A8D0JYF1 38401543
    804294 8uiv:A (1.511) BS01 FAD 1.14.13.114 GO:0071949 ... Q88FY2 38104959
    804295 8ujm:A (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    804296 8ujm:B (2.161) BS01 MG ?
    3.1.3.16    		 GO:0016791 ... O95476
    Q8N9A8    		 38776370
    804297 8ujt:A (2.31) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804298 8ujt:A (2.31) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804299 8ujt:A (2.31) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804300 8ujt:A (2.31) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804301 8ujt:A (2.31) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804302 8ujv:A (2.23) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804303 8ujv:A (2.23) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804304 8ujv:A (2.23) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804305 8ujv:A (2.23) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804306 8ujv:A (2.23) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804307 8ujx:A (2.17) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804308 8ujx:A (2.17) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804309 8ujx:A (2.17) BS03 XG4 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804310 8ujx:A (2.17) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804311 8ujx:A (2.17) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    804312 8ujy:A (2.01) BS01 VV3 ? GO:0000122 ... P61964 38085679
    804313 8ujy:B (2.01) BS01 VV3 ? GO:0000122 ... P61964 38085679
    804314 8uk2:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804315 8uk2:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804316 8uk2:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804317 8uk2:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804318 8uk2:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804319 8uk2:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804320 8uk2:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804321 8uk2:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804322 8uk2:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804323 8uk2:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804324 8uk2:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804325 8uk2:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804326 8uk2:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804327 8uk2:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804328 8uk2:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804329 8uk2:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804330 8uk2:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804331 8uk2:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804332 8uk2:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804333 8uk2:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804334 8uk2:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804335 8uk2:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804336 8uk2:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804337 8uk2:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804338 8uk2:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804339 8uk2:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804340 8uk2:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804341 8uk2:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804342 8uk2:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804343 8uk2:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804344 8uk2:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804345 8uk2:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804346 8uk2:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804347 8uk2:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804348 8uk2:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804349 8uk2:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804350 8uk2:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804351 8uk2:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804352 8uk2:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804353 8uk2:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804354 8uk2:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804355 8uk2:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804356 8uk2:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804357 8uk2:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804358 8uk2:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804359 8uk2:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804360 8uk2:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804361 8uk2:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804362 8uk2:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804363 8uk2:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804364 8uk2:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804365 8uk2:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804366 8uk2:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804367 8uk2:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804368 8uk3:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804369 8uk3:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804370 8uk3:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804371 8uk3:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804372 8uk3:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804373 8uk3:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804374 8uk3:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804375 8uk3:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804376 8uk3:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804377 8uk3:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804378 8uk3:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804379 8uk3:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804380 8uk3:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804381 8uk3:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804382 8uk3:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804383 8uk3:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804384 8uk3:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804385 8uk3:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804386 8uk3:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804387 8uk3:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804388 8uk3:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804389 8uk3:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804390 8uk3:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804391 8uk3:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804392 8uk3:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804393 8uk3:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804394 8uk3:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804395 8uk3:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804396 8uk3:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804397 8uk3:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    804398 8uk3:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    804399 8uk3:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    804400 8uk3:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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