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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    804001 8ugr:5q (6.5) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    804002 8ugr:6C (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    804003 8ugr:6C (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    804004 8ugr:6D (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    804005 8ugr:6E (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    804006 8ugr:6P (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    804007 8ugr:6P (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    804008 8ugr:6Q (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    804009 8ugr:6R (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    804010 8ugr:8A (6.5) BS01 HEA N/A GO:0004129 ... O79876 38811722
    804011 8ugr:8A (6.5) BS02 HEA N/A GO:0004129 ... O79876 38811722
    804012 8ugr:8A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    804013 8ugr:8A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    804014 8ugr:8B (6.5) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    804015 8ugr:8F (6.5) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    804016 8ugs:A (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    804017 8ugs:A (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    804018 8ugs:A (3.2) BS03 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    804019 8ugs:B (3.2) BS01 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    804020 8ugs:B (3.2) BS02 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    804021 8ugs:B (3.2) BS03 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    804022 8ugt:A (2.65) BS01 WOF N/A GO:0004565 ... A0A174ZZA3 39211470
    804023 8ugy:R (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    804024 8ugy:R (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    804025 8ugy:R (3.31) BS03 WRU ? GO:0001586 ... P28566 38630816
    804026 8ugz:A (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    804027 8ugz:B (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    804028 8ugz:C (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    804029 8ugz:D (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    804030 8uh0:A (2.73) BS01 WRN ? GO:0005085 ... Q07890 38156904
    804031 8uh3:D (3.31) BS01 CLR ? GO:0001586 ... P28566 38630816
    804032 8uh3:D (3.31) BS02 CLR ? GO:0001586 ... P28566 38630816
    804033 8uh3:D (3.31) BS03 CLR ? GO:0001586 ... P28566 38630816
    804034 8uh3:D (3.31) BS04 WOQ ? GO:0001586 ... P28566 38630816
    804035 8uh4:1 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804036 8uh4:1 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804037 8uh4:2 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804038 8uh4:2 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804039 8uh4:3 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804040 8uh4:3 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804041 8uh4:4 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804042 8uh4:4 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804043 8uh4:5 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804044 8uh4:5 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804045 8uh4:6 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804046 8uh4:6 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804047 8uh4:7 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804048 8uh4:7 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804049 8uh4:8 (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804050 8uh4:8 (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804051 8uh4:A (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804052 8uh4:A (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804053 8uh4:B (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804054 8uh4:B (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804055 8uh4:C (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804056 8uh4:C (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804057 8uh4:D (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804058 8uh4:D (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804059 8uh4:E (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804060 8uh4:E (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804061 8uh4:F (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804062 8uh4:F (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804063 8uh4:G (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804064 8uh4:G (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804065 8uh4:H (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804066 8uh4:H (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804067 8uh4:I (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804068 8uh4:I (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804069 8uh4:J (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804070 8uh4:J (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804071 8uh4:K (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804072 8uh4:K (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804073 8uh4:L (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804074 8uh4:L (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804075 8uh4:M (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804076 8uh4:M (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804077 8uh4:N (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804078 8uh4:N (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804079 8uh4:O (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804080 8uh4:O (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804081 8uh4:P (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804082 8uh4:P (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804083 8uh4:Q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804084 8uh4:Q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804085 8uh4:R (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804086 8uh4:R (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804087 8uh4:S (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804088 8uh4:S (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804089 8uh4:T (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804090 8uh4:T (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804091 8uh4:U (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804092 8uh4:U (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804093 8uh4:V (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804094 8uh4:V (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804095 8uh4:W (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804096 8uh4:W (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804097 8uh4:X (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804098 8uh4:X (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804099 8uh4:Y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804100 8uh4:Y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804101 8uh4:Z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804102 8uh4:Z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804103 8uh4:a (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804104 8uh4:a (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804105 8uh4:b (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804106 8uh4:b (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804107 8uh4:c (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804108 8uh4:c (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804109 8uh4:d (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804110 8uh4:d (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804111 8uh4:e (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804112 8uh4:e (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804113 8uh4:f (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804114 8uh4:f (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804115 8uh4:g (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804116 8uh4:g (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804117 8uh4:h (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804118 8uh4:h (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804119 8uh4:i (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804120 8uh4:i (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804121 8uh4:j (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804122 8uh4:j (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804123 8uh4:k (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804124 8uh4:k (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804125 8uh4:l (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804126 8uh4:l (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804127 8uh4:m (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804128 8uh4:m (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804129 8uh4:n (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804130 8uh4:n (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804131 8uh4:o (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804132 8uh4:o (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804133 8uh4:p (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804134 8uh4:p (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804135 8uh4:q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804136 8uh4:q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804137 8uh4:r (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804138 8uh4:r (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804139 8uh4:s (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804140 8uh4:s (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804141 8uh4:t (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804142 8uh4:t (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804143 8uh4:u (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804144 8uh4:u (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804145 8uh4:v (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804146 8uh4:v (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804147 8uh4:w (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804148 8uh4:w (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804149 8uh4:x (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804150 8uh4:x (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804151 8uh4:y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804152 8uh4:y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804153 8uh4:z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    804154 8uh4:z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    804155 8uh5:A (1.74) BS01 WOK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    804156 8uh7:A (2.628) BS01 dna ? GO:0003677 ... P04527 38177685
    804157 8uh7:B (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804158 8uh7:B (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    804159 8uh7:B (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804160 8uh7:C (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804161 8uh7:C (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    804162 8uh7:C (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804163 8uh7:D (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804164 8uh7:D (2.628) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    804165 8uh7:D (2.628) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    804166 8uh7:E (2.628) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    804167 8uh7:E (2.628) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    804168 8uh9:A (2.067) BS01 WOK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 N/A
    804169 8uha:A (3.5) BS01 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804170 8uha:A (3.5) BS02 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804171 8uha:A (3.5) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804172 8uha:A (3.5) BS04 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804173 8uha:A (3.5) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804174 8uha:B (3.5) BS01 rna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804175 8uha:B (3.5) BS02 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804176 8uha:B (3.5) BS03 dna 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804177 8uha:B (3.5) BS04 ZN 2.7.7.6 GO:0000428 ... I3LGP4 38401543
    804178 8uha:C (3.5) BS01 ZN ? GO:0000428 ... I3LCH3 38401543
    804179 8uha:I (3.5) BS01 ZN ? GO:0000428 ... P60899 38401543
    804180 8uha:I (3.5) BS02 ZN ? GO:0000428 ... P60899 38401543
    804181 8uha:J (3.5) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    804182 8uha:L (3.5) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    804183 8uha:V (3.5) BS01 peptide ? GO:0003723 ... Q8WX92 38401543
    804184 8uhb:A (3.35) BS01 WV8 ? GO:0001594 ... P07550
    P0ABE7
    Q96RJ0    		 38168118
    804185 8uhd:A (2.8) BS01 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804186 8uhd:A (2.8) BS02 rna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804187 8uhd:A (2.8) BS03 dna 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804188 8uhd:A (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804189 8uhd:A (2.8) BS05 ZN 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804190 8uhd:A (2.8) BS06 MG 2.7.7.6 GO:0000428 ... A0A8D1DPV6 38401543
    804191 8uhd:B (2.8) BS01 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    804192 8uhd:B (2.8) BS02 rna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    804193 8uhd:B (2.8) BS03 dna 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    804194 8uhd:B (2.8) BS04 ZN 2.7.7.6 GO:0000428 ... A0A4X1TVZ5 38401543
    804195 8uhd:C (2.8) BS01 ZN ? GO:0003677 ... A0A481DF93 38401543
    804196 8uhd:E (2.8) BS01 dna ? GO:0003677 ... A0A4X1VTX4 38401543
    804197 8uhd:I (2.8) BS01 ZN ? GO:0000428 ... P60899 38401543
    804198 8uhd:I (2.8) BS02 ZN ? GO:0000428 ... P60899 38401543
    804199 8uhd:J (2.8) BS01 ZN ? GO:0000428 ... A0A8W4F9W9 38401543
    804200 8uhd:L (2.8) BS01 ZN ? GO:0003677 ... A0A4X1TRS6 38401543
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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