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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    803801 8ugi:4B (2.1) BS02 CUA N/A GO:0004129 ... P50667 38811722
    803802 8ugi:4F (2.1) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    803803 8ugj:1B (2.3) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    803804 8ugj:1D (2.3) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803805 8ugj:1D (2.3) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803806 8ugj:1E (2.3) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    803807 8ugj:1F (2.3) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    803808 8ugj:1F (2.3) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    803809 8ugj:1G (2.3) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803810 8ugj:1G (2.3) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803811 8ugj:1G (2.3) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    803812 8ugj:1I (2.3) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803813 8ugj:1I (2.3) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803814 8ugj:1O (2.3) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    803815 8ugj:1P (2.3) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    803816 8ugj:1R (2.3) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    803817 8ugj:1U (2.3) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    803818 8ugj:1W (2.3) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    803819 8ugj:1h (2.3) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    803820 8ugj:1q (2.3) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    803821 8ugj:3C (2.3) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803822 8ugj:3C (2.3) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803823 8ugj:3D (2.3) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803824 8ugj:3E (2.3) BS01 FES N/A GO:0005739 ... A0A4X1TWD8 38811722
    803825 8ugj:3P (2.3) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803826 8ugj:3P (2.3) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803827 8ugj:3Q (2.3) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803828 8ugj:3R (2.3) BS01 FES N/A GO:0005739 ... A0A4X1TWD8 38811722
    803829 8ugj:4A (2.3) BS01 HEA N/A GO:0004129 ... O79876 38811722
    803830 8ugj:4A (2.3) BS02 HEA N/A GO:0004129 ... O79876 38811722
    803831 8ugj:4A (2.3) BS03 CU N/A GO:0004129 ... O79876 38811722
    803832 8ugj:4A (2.3) BS04 MG N/A GO:0004129 ... O79876 38811722
    803833 8ugj:4B (2.3) BS01 HEA N/A GO:0004129 ... Q69GF7 38811722
    803834 8ugj:4B (2.3) BS02 CUA N/A GO:0004129 ... Q69GF7 38811722
    803835 8ugj:4F (2.3) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    803836 8ugj:8A (2.3) BS01 HEA N/A GO:0004129 ... O79876 38811722
    803837 8ugj:8A (2.3) BS02 HEA N/A GO:0004129 ... O79876 38811722
    803838 8ugj:8A (2.3) BS03 CU N/A GO:0004129 ... O79876 38811722
    803839 8ugj:8A (2.3) BS04 MG N/A GO:0004129 ... O79876 38811722
    803840 8ugj:8B (2.3) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    803841 8ugj:8F (2.3) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    803842 8ugk:3C (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803843 8ugk:3C (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803844 8ugk:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803845 8ugk:3E (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803846 8ugk:3P (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803847 8ugk:3P (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803848 8ugk:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803849 8ugk:3R (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803850 8ugl:4A (3.0) BS01 HEA N/A GO:0004129 ... O79876 38811722
    803851 8ugl:4A (3.0) BS02 HEA N/A GO:0004129 ... O79876 38811722
    803852 8ugl:4A (3.0) BS03 CU N/A GO:0004129 ... O79876 38811722
    803853 8ugl:4A (3.0) BS04 MG N/A GO:0004129 ... O79876 38811722
    803854 8ugl:4B (3.0) BS01 HEA N/A GO:0004129 ... Q69GF7 38811722
    803855 8ugl:4B (3.0) BS02 CUA N/A GO:0004129 ... Q69GF7 38811722
    803856 8ugl:4F (3.0) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    803857 8ugn:1B (2.7) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    803858 8ugn:1D (2.7) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803859 8ugn:1D (2.7) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803860 8ugn:1E (2.7) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    803861 8ugn:1F (2.7) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    803862 8ugn:1F (2.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    803863 8ugn:1G (2.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803864 8ugn:1G (2.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803865 8ugn:1G (2.7) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    803866 8ugn:1I (2.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803867 8ugn:1I (2.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803868 8ugn:1O (2.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    803869 8ugn:1P (2.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    803870 8ugn:1R (2.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    803871 8ugn:1T (2.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    803872 8ugn:1U (2.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    803873 8ugn:1W (2.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    803874 8ugn:1h (2.7) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    803875 8ugn:1q (2.7) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    803876 8ugn:3C (2.7) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803877 8ugn:3C (2.7) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803878 8ugn:3D (2.7) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803879 8ugn:3E (2.7) BS01 FES N/A GO:0005739 ... A0A4X1TWD8 38811722
    803880 8ugn:3P (2.7) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803881 8ugn:3P (2.7) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803882 8ugn:3Q (2.7) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803883 8ugn:3R (2.7) BS01 FES N/A GO:0005739 ... A0A4X1TWD8 38811722
    803884 8ugn:4A (2.7) BS01 HEA N/A GO:0004129 ... O79876 38811722
    803885 8ugn:4A (2.7) BS02 HEA N/A GO:0004129 ... O79876 38811722
    803886 8ugn:4A (2.7) BS03 CU N/A GO:0004129 ... O79876 38811722
    803887 8ugn:4A (2.7) BS04 MG N/A GO:0004129 ... O79876 38811722
    803888 8ugn:4B (2.7) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    803889 8ugn:4F (2.7) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    803890 8ugn:5B (2.7) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    803891 8ugn:5D (2.7) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803892 8ugn:5D (2.7) BS02 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803893 8ugn:5E (2.7) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    803894 8ugn:5F (2.7) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    803895 8ugn:5F (2.7) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    803896 8ugn:5G (2.7) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803897 8ugn:5G (2.7) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803898 8ugn:5G (2.7) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    803899 8ugn:5I (2.7) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803900 8ugn:5I (2.7) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803901 8ugn:5O (2.7) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    803902 8ugn:5O (2.7) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    803903 8ugn:5P (2.7) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    803904 8ugn:5R (2.7) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    803905 8ugn:5U (2.7) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    803906 8ugn:5W (2.7) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    803907 8ugn:5h (2.7) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    803908 8ugn:5q (2.7) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    803909 8ugn:8A (2.7) BS01 HEA N/A GO:0004129 ... O79876 38811722
    803910 8ugn:8A (2.7) BS02 HEA N/A GO:0004129 ... O79876 38811722
    803911 8ugn:8A (2.7) BS03 CU N/A GO:0004129 ... O79876 38811722
    803912 8ugn:8A (2.7) BS04 MG N/A GO:0004129 ... O79876 38811722
    803913 8ugn:8B (2.7) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    803914 8ugn:8F (2.7) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    803915 8ugp:1B (2.0) BS01 peptide N/A GO:0046872 ... A0A4X1VVS8 38811722
    803916 8ugp:1B (2.0) BS02 peptide N/A GO:0046872 ... A0A4X1VVS8 38811722
    803917 8ugp:1B (2.0) BS03 peptide N/A GO:0046872 ... A0A4X1VVS8 38811722
    803918 8ugp:1B (2.0) BS04 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    803919 8ugp:1C (2.0) BS01 peptide N/A GO:0003954 ... A0A286ZNN4 38811722
    803920 8ugp:1C (2.0) BS02 peptide N/A GO:0003954 ... A0A286ZNN4 38811722
    803921 8ugp:1C (2.0) BS03 peptide N/A GO:0003954 ... A0A286ZNN4 38811722
    803922 8ugp:1D (2.0) BS01 peptide N/A GO:0051539 ... A0A8D0QM68 38811722
    803923 8ugp:1D (2.0) BS02 peptide N/A GO:0051539 ... A0A8D0QM68 38811722
    803924 8ugp:1D (2.0) BS03 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803925 8ugp:1I (2.0) BS01 peptide N/A GO:0003954 ... A0A286ZUN9 38811722
    803926 8ugp:1I (2.0) BS02 peptide N/A GO:0003954 ... A0A286ZUN9 38811722
    803927 8ugp:1I (2.0) BS03 peptide N/A GO:0003954 ... A0A286ZUN9 38811722
    803928 8ugp:1I (2.0) BS04 peptide N/A GO:0003954 ... A0A286ZUN9 38811722
    803929 8ugp:1I (2.0) BS05 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803930 8ugp:1I (2.0) BS06 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803931 8ugp:1q (2.0) BS01 peptide N/A GO:0005739 ... A0A4X1SJF2 38811722
    803932 8ugp:1q (2.0) BS02 peptide N/A GO:0005739 ... A0A4X1SJF2 38811722
    803933 8ugq:A (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803934 8ugq:B (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803935 8ugq:B (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803936 8ugq:C (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803937 8ugq:C (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803938 8ugq:D (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803939 8ugq:D (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803940 8ugq:E (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803941 8ugq:E (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803942 8ugq:F (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803943 8ugq:F (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803944 8ugq:G (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803945 8ugq:G (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803946 8ugq:H (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803947 8ugq:H (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803948 8ugq:I (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803949 8ugq:I (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803950 8ugq:J (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803951 8ugq:J (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803952 8ugq:K (3.17) BS01 dna ? GO:0003677 ... P06448 N/A
    803953 8ugq:K (3.17) BS02 dna ? GO:0003677 ... P06448 N/A
    803954 8ugr:1B (6.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    803955 8ugr:1D (6.5) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803956 8ugr:1E (6.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    803957 8ugr:1F (6.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    803958 8ugr:1F (6.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    803959 8ugr:1G (6.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803960 8ugr:1G (6.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803961 8ugr:1G (6.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    803962 8ugr:1I (6.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803963 8ugr:1I (6.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803964 8ugr:1O (6.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    803965 8ugr:1P (6.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    803966 8ugr:1R (6.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    803967 8ugr:1U (6.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    803968 8ugr:1W (6.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    803969 8ugr:1h (6.5) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    803970 8ugr:1q (6.5) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    803971 8ugr:3C (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803972 8ugr:3C (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803973 8ugr:3D (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803974 8ugr:3E (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803975 8ugr:3P (6.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803976 8ugr:3P (6.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803977 8ugr:3Q (6.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803978 8ugr:3R (6.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803979 8ugr:4A (6.5) BS01 HEA N/A GO:0004129 ... O79876 38811722
    803980 8ugr:4A (6.5) BS02 HEA N/A GO:0004129 ... O79876 38811722
    803981 8ugr:4A (6.5) BS03 CU N/A GO:0004129 ... O79876 38811722
    803982 8ugr:4A (6.5) BS04 MG N/A GO:0004129 ... O79876 38811722
    803983 8ugr:4B (6.5) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    803984 8ugr:4F (6.5) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    803985 8ugr:5B (6.5) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    803986 8ugr:5E (6.5) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    803987 8ugr:5F (6.5) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    803988 8ugr:5F (6.5) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    803989 8ugr:5G (6.5) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803990 8ugr:5G (6.5) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803991 8ugr:5G (6.5) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    803992 8ugr:5I (6.5) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803993 8ugr:5I (6.5) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803994 8ugr:5O (6.5) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    803995 8ugr:5O (6.5) BS02 MG N/A GO:0005737 ... F1SIS9 38811722
    803996 8ugr:5P (6.5) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    803997 8ugr:5R (6.5) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    803998 8ugr:5T (6.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    803999 8ugr:5U (6.5) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    804000 8ugr:5W (6.5) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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