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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    803601 8ufq:D (1.98) BS01 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    803602 8ufq:D (1.98) BS02 ZN 1.14.13.39 GO:0004517 ... P29475 38417024
    803603 8ufq:D (1.98) BS03 H4B 1.14.13.39 GO:0004517 ... P29475 38417024
    803604 8ufq:D (1.98) BS04 HEM 1.14.13.39 GO:0004517 ... P29475 38417024
    803605 8ufr:A (1.871) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803606 8ufr:A (1.871) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803607 8ufr:A (1.871) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    803608 8ufr:A (1.871) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803609 8ufr:A (1.871) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803610 8ufr:B (1.871) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803611 8ufr:B (1.871) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803612 8ufr:B (1.871) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803613 8ufr:B (1.871) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803614 8ufr:B (1.871) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    803615 8ufr:C (1.871) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803616 8ufr:C (1.871) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803617 8ufr:C (1.871) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    803618 8ufr:C (1.871) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803619 8ufr:C (1.871) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803620 8ufr:D (1.871) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803621 8ufr:D (1.871) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803622 8ufr:D (1.871) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803623 8ufr:D (1.871) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803624 8ufr:D (1.871) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    803625 8ufs:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803626 8ufs:A (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803627 8ufs:A (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803628 8ufs:A (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803629 8ufs:B (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803630 8ufs:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803631 8ufs:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803632 8ufs:B (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803633 8ufs:C (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803634 8ufs:C (2.05) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803635 8ufs:C (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803636 8ufs:C (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803637 8ufs:D (2.05) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803638 8ufs:D (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803639 8ufs:D (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803640 8ufs:D (2.05) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803641 8uft:A (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803642 8uft:A (1.78) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803643 8uft:A (1.78) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    803644 8uft:A (1.78) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803645 8uft:A (1.78) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803646 8uft:B (1.78) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803647 8uft:B (1.78) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803648 8uft:B (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803649 8uft:B (1.78) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803650 8uft:B (1.78) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    803651 8uft:C (1.78) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803652 8uft:C (1.78) BS02 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803653 8uft:C (1.78) BS03 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    803654 8uft:C (1.78) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803655 8uft:C (1.78) BS05 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803656 8uft:D (1.78) BS01 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803657 8uft:D (1.78) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803658 8uft:D (1.78) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803659 8uft:D (1.78) BS04 H4B 1.14.13.39 GO:0004517 ... P29474 38417024
    803660 8uft:D (1.78) BS05 WK2 1.14.13.39 GO:0004517 ... P29474 38417024
    803661 8ufu:A (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803662 8ufu:A (2.05) BS02 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803663 8ufu:A (2.05) BS03 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803664 8ufu:A (2.05) BS04 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803665 8ufu:A (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803666 8ufu:B (2.05) BS01 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803667 8ufu:B (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803668 8ufu:B (2.05) BS03 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803669 8ufu:B (2.05) BS04 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803670 8ufu:B (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803671 8ufu:C (2.05) BS01 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803672 8ufu:C (2.05) BS02 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803673 8ufu:C (2.05) BS03 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803674 8ufu:C (2.05) BS04 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803675 8ufu:D (2.05) BS01 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803676 8ufu:D (2.05) BS02 ZN 1.14.13.39 GO:0004517 ... P29474 38417024
    803677 8ufu:D (2.05) BS03 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803678 8ufu:D (2.05) BS04 HEM 1.14.13.39 GO:0004517 ... P29474 38417024
    803679 8ufu:D (2.05) BS05 WRI 1.14.13.39 GO:0004517 ... P29474 38417024
    803680 8ug1:A (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    803681 8ug1:B (1.99) BS01 WNH 2.7.1.3 GO:0004454 ... P50053 37992274
    803682 8ug3:A (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    803683 8ug3:B (2.02) BS01 WRE 2.7.1.3 GO:0004454 ... P50053 37992274
    803684 8ugb:A (3.0) BS01 peptide 3.1.4.35 GO:0001750 ... P11541 38159849
    803685 8ugb:A (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P11541 38159849
    803686 8ugb:A (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P11541 38159849
    803687 8ugb:A (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P11541 38159849
    803688 8ugb:B (3.0) BS01 peptide 3.1.4.35 GO:0001750 ... P23439 38159849
    803689 8ugb:B (3.0) BS02 PCG 3.1.4.35 GO:0001750 ... P23439 38159849
    803690 8ugb:B (3.0) BS03 ZN 3.1.4.35 GO:0001750 ... P23439 38159849
    803691 8ugb:B (3.0) BS04 ZUD 3.1.4.35 GO:0001750 ... P23439 38159849
    803692 8ugd:3C (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803693 8ugd:3C (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803694 8ugd:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803695 8ugd:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803696 8ugd:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803697 8ugd:3E (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803698 8ugd:3P (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803699 8ugd:3P (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803700 8ugd:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803701 8ugd:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803702 8ugd:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803703 8ugd:3R (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803704 8uge:3C (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803705 8uge:3C (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803706 8uge:3C (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803707 8uge:3C (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803708 8uge:3D (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803709 8uge:3E (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803710 8uge:3P (3.5) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803711 8uge:3P (3.5) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803712 8uge:3P (3.5) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803713 8uge:3P (3.5) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803714 8uge:3Q (3.5) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803715 8uge:3R (3.5) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803716 8ugf:3C (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803717 8ugf:3C (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803718 8ugf:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803719 8ugf:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803720 8ugf:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803721 8ugf:3E (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803722 8ugf:3P (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803723 8ugf:3P (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803724 8ugf:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803725 8ugf:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803726 8ugf:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803727 8ugf:3R (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803728 8ugg:3C (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803729 8ugg:3C (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803730 8ugg:3C (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803731 8ugg:3C (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803732 8ugg:3D (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803733 8ugg:3E (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803734 8ugg:3P (3.6) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803735 8ugg:3P (3.6) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803736 8ugg:3P (3.6) BS03 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803737 8ugg:3P (3.6) BS04 U10 N/A GO:0005739 ... Q1HBG9 38811722
    803738 8ugg:3Q (3.6) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803739 8ugg:3R (3.6) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803740 8ugh:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    803741 8ugh:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    803742 8ugh:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    803743 8ugh:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    803744 8ugh:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803745 8ugh:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803746 8ugh:1G (2.1) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    803747 8ugh:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803748 8ugh:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803749 8ugh:1I (2.1) BS03 AYA N/A GO:0003954 ... A0A286ZUN9 38811722
    803750 8ugh:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    803751 8ugh:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    803752 8ugh:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    803753 8ugh:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    803754 8ugh:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    803755 8ugh:1h (2.1) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    803756 8ugh:1q (2.1) BS01 AYA N/A GO:0005739 ... F1SQP4 38811722
    803757 8ugh:3C (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803758 8ugh:3C (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803759 8ugh:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803760 8ugh:3E (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803761 8ugh:3P (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803762 8ugh:3P (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803763 8ugh:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A287AZF9 38811722
    803764 8ugh:3R (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803765 8ugh:4A (2.1) BS01 HEA N/A GO:0004129 ... O79876 38811722
    803766 8ugh:4A (2.1) BS02 HEA N/A GO:0004129 ... O79876 38811722
    803767 8ugh:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    803768 8ugh:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    803769 8ugh:4B (2.1) BS01 CUA N/A GO:0004129 ... Q69GF7 38811722
    803770 8ugh:4F (2.1) BS01 ZN N/A GO:0005739 ... Q5S3G4 38811722
    803771 8ugi:1B (2.1) BS01 SF4 N/A GO:0046872 ... A0A4X1VVS8 38811722
    803772 8ugi:1D (2.1) BS01 SF4 N/A GO:0051539 ... A0A8D0QM68 38811722
    803773 8ugi:1E (2.1) BS01 FES N/A GO:0005739 ... A0A4X1VRV3 38811722
    803774 8ugi:1F (2.1) BS01 FMN N/A GO:0005739 ... A0A4X1SZP7 38811722
    803775 8ugi:1F (2.1) BS02 SF4 N/A GO:0005739 ... A0A4X1SZP7 38811722
    803776 8ugi:1G (2.1) BS01 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803777 8ugi:1G (2.1) BS02 SF4 N/A GO:0005743 ... A0A287ARY3 38811722
    803778 8ugi:1G (2.1) BS03 FES N/A GO:0005743 ... A0A287ARY3 38811722
    803779 8ugi:1I (2.1) BS01 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803780 8ugi:1I (2.1) BS02 SF4 N/A GO:0003954 ... A0A286ZUN9 38811722
    803781 8ugi:1O (2.1) BS01 GTP N/A GO:0005737 ... F1SIS9 38811722
    803782 8ugi:1P (2.1) BS01 NDP N/A GO:0005739 ... A0A4X1ULW2 38811722
    803783 8ugi:1R (2.1) BS01 ZN N/A GO:0005739 ... A0A4X1THU2 38811722
    803784 8ugi:1U (2.1) BS01 EHZ N/A GO:0005739 ... A0A8D1KH26 38811722
    803785 8ugi:1W (2.1) BS01 EHZ N/A GO:0005739 ... A0A480VKQ8 38811722
    803786 8ugi:1d (2.1) BS01 AME N/A GO:0005737 ... A0A480JRW3 38811722
    803787 8ugi:1h (2.1) BS01 AME N/A GO:0005654 ... F1SGC6 38811722
    803788 8ugi:3C (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803789 8ugi:3C (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803790 8ugi:3D (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803791 8ugi:3E (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803792 8ugi:3P (2.1) BS01 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803793 8ugi:3P (2.1) BS02 HEM N/A GO:0005739 ... Q1HBG9 38811722
    803794 8ugi:3Q (2.1) BS01 HEC N/A GO:0005739 ... A0A4X1UNI7 38811722
    803795 8ugi:3R (2.1) BS01 FES N/A GO:0005739 ... A0A480EHC1 38811722
    803796 8ugi:4A (2.1) BS01 HEA N/A GO:0004129 ... O79876 38811722
    803797 8ugi:4A (2.1) BS02 HEA N/A GO:0004129 ... O79876 38811722
    803798 8ugi:4A (2.1) BS03 CU N/A GO:0004129 ... O79876 38811722
    803799 8ugi:4A (2.1) BS04 MG N/A GO:0004129 ... O79876 38811722
    803800 8ugi:4B (2.1) BS01 HEA N/A GO:0004129 ... P50667 38811722

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
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