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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    802801 8ud7:1m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    802802 8ud7:1m (2.55) BS04 MG ? GO:0000049 ... P80377 38359125
    802803 8ud7:1n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    802804 8ud7:1n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    802805 8ud7:1o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    802806 8ud7:1o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    802807 8ud7:1p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    802808 8ud7:1q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    802809 8ud7:1r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    802810 8ud7:1s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    802811 8ud7:1t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    802812 8ud7:1t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    802813 8ud7:20 (2.55) BS01 rna ? GO:0003735 ... P60493 38359125
    802814 8ud7:20 (2.55) BS02 rna ? GO:0003735 ... P60493 38359125
    802815 8ud7:20 (2.55) BS03 rna ? GO:0003735 ... P60493 38359125
    802816 8ud7:21 (2.55) BS01 rna ? GO:0003735 ... P60494 38359125
    802817 8ud7:22 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    802818 8ud7:23 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    802819 8ud7:23 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    802820 8ud7:24 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    802821 8ud7:24 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    802822 8ud7:25 (2.55) BS01 rna ? GO:0003735 ... P80339 38359125
    802823 8ud7:25 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    802824 8ud7:25 (2.55) BS03 ZN ? GO:0003735 ... P80339 38359125
    802825 8ud7:26 (2.55) BS01 rna ? GO:0000049 ... P35871 38359125
    802826 8ud7:26 (2.55) BS02 ZN ? GO:0000049 ... P35871 38359125
    802827 8ud7:27 (2.55) BS01 rna ? GO:0003735 ... P80340 38359125
    802828 8ud7:27 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    802829 8ud7:27 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    802830 8ud7:28 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    802831 8ud7:29 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    802832 8ud7:29 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    802833 8ud7:2D (2.55) BS01 rna ? GO:0002181 ... P60405 38359125
    802834 8ud7:2D (2.55) BS02 rna ? GO:0002181 ... P60405 38359125
    802835 8ud7:2D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    802836 8ud7:2D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    802837 8ud7:2D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    802838 8ud7:2D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    802839 8ud7:2D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    802840 8ud7:2E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    802841 8ud7:2F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    802842 8ud7:2F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    802843 8ud7:2F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    802844 8ud7:2F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    802845 8ud7:2G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    802846 8ud7:2G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    802847 8ud7:2G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    802848 8ud7:2G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    802849 8ud7:2H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    802850 8ud7:2I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    802851 8ud7:2N (2.55) BS01 rna ? GO:0003729 ... P60488 38359125
    802852 8ud7:2O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    802853 8ud7:2O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    802854 8ud7:2P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    802855 8ud7:2Q (2.55) BS01 rna ? GO:0000049 ... P60489 38359125
    802856 8ud7:2Q (2.55) BS02 rna ? GO:0000049 ... P60489 38359125
    802857 8ud7:2Q (2.55) BS03 rna ? GO:0000049 ... P60489 38359125
    802858 8ud7:2Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    802859 8ud7:2Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    802860 8ud7:2Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    802861 8ud7:2R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    802862 8ud7:2S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    802863 8ud7:2S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    802864 8ud7:2T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    802865 8ud7:2T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    802866 8ud7:2U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    802867 8ud7:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    802868 8ud7:2V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    802869 8ud7:2V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    802870 8ud7:2W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    802871 8ud7:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    802872 8ud7:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    802873 8ud7:2X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    802874 8ud7:2X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    802875 8ud7:2Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    802876 8ud7:2Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    802877 8ud7:2Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    802878 8ud7:2Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    802879 8ud7:2b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    802880 8ud7:2c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    802881 8ud7:2d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    802882 8ud7:2d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    802883 8ud7:2e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    802884 8ud7:2e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    802885 8ud7:2f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    802886 8ud7:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    802887 8ud7:2g (2.55) BS01 rna ? GO:0000028 ... P17291 38359125
    802888 8ud7:2g (2.55) BS02 rna ? GO:0000028 ... P17291 38359125
    802889 8ud7:2h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    802890 8ud7:2i (2.55) BS01 rna ? GO:0000049 ... P80374 38359125
    802891 8ud7:2i (2.55) BS02 rna ? GO:0000049 ... P80374 38359125
    802892 8ud7:2j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    802893 8ud7:2k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    802894 8ud7:2k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    802895 8ud7:2l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    802896 8ud7:2l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    802897 8ud7:2l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    802898 8ud7:2l (2.55) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    802899 8ud7:2m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    802900 8ud7:2m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    802901 8ud7:2m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    802902 8ud7:2n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    802903 8ud7:2n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    802904 8ud7:2o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    802905 8ud7:2o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    802906 8ud7:2p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    802907 8ud7:2q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    802908 8ud7:2q (2.55) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    802909 8ud7:2r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    802910 8ud7:2s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    802911 8ud7:2t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    802912 8ud7:2t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    802913 8ud8:10 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    802914 8ud8:10 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    802915 8ud8:10 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    802916 8ud8:10 (2.6) BS04 MG ? GO:0003735 ... P60493 38359125
    802917 8ud8:10 (2.6) BS05 MG ? GO:0003735 ... P60493 38359125
    802918 8ud8:11 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    802919 8ud8:11 (2.6) BS02 rna ? GO:0003735 ... P60494 38359125
    802920 8ud8:11 (2.6) BS03 MG ? GO:0003735 ... P60494 38359125
    802921 8ud8:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    802922 8ud8:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    802923 8ud8:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    802924 8ud8:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    802925 8ud8:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    802926 8ud8:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    802927 8ud8:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    802928 8ud8:15 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    802929 8ud8:15 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    802930 8ud8:15 (2.6) BS03 MG ? GO:0003735 ... P80339 38359125
    802931 8ud8:15 (2.6) BS04 MG ? GO:0003735 ... P80339 38359125
    802932 8ud8:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 38359125
    802933 8ud8:16 (2.6) BS01 rna ? GO:0000049 ... P35871 38359125
    802934 8ud8:16 (2.6) BS02 MG ? GO:0000049 ... P35871 38359125
    802935 8ud8:16 (2.6) BS03 ZN ? GO:0000049 ... P35871 38359125
    802936 8ud8:17 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    802937 8ud8:17 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    802938 8ud8:17 (2.6) BS03 MG ? GO:0003735 ... P80340 38359125
    802939 8ud8:17 (2.6) BS04 MG ? GO:0003735 ... P80340 38359125
    802940 8ud8:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    802941 8ud8:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    802942 8ud8:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    802943 8ud8:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    802944 8ud8:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    802945 8ud8:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    802946 8ud8:1D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    802947 8ud8:1D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    802948 8ud8:1D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    802949 8ud8:1D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    802950 8ud8:1D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    802951 8ud8:1D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    802952 8ud8:1D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    802953 8ud8:1D (2.6) BS08 MG ? GO:0002181 ... P60405 38359125
    802954 8ud8:1D (2.6) BS09 MG ? GO:0002181 ... P60405 38359125
    802955 8ud8:1D (2.6) BS10 MG ? GO:0002181 ... P60405 38359125
    802956 8ud8:1D (2.6) BS11 MG ? GO:0002181 ... P60405 38359125
    802957 8ud8:1D (2.6) BS12 MG ? GO:0002181 ... P60405 38359125
    802958 8ud8:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    802959 8ud8:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    802960 8ud8:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    802961 8ud8:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    802962 8ud8:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    802963 8ud8:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    802964 8ud8:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    802965 8ud8:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    802966 8ud8:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    802967 8ud8:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    802968 8ud8:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    802969 8ud8:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    802970 8ud8:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    802971 8ud8:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    802972 8ud8:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    802973 8ud8:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    802974 8ud8:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    802975 8ud8:1G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    802976 8ud8:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    802977 8ud8:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 38359125
    802978 8ud8:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    802979 8ud8:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    802980 8ud8:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    802981 8ud8:1N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    802982 8ud8:1N (2.6) BS02 MG ? GO:0003729 ... P60488 38359125
    802983 8ud8:1N (2.6) BS03 MG ? GO:0003729 ... P60488 38359125
    802984 8ud8:1N (2.6) BS04 MG ? GO:0003729 ... P60488 38359125
    802985 8ud8:1N (2.6) BS05 MG ? GO:0003729 ... P60488 38359125
    802986 8ud8:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    802987 8ud8:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    802988 8ud8:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    802989 8ud8:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    802990 8ud8:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    802991 8ud8:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    802992 8ud8:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    802993 8ud8:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    802994 8ud8:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    802995 8ud8:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    802996 8ud8:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 38359125
    802997 8ud8:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 38359125
    802998 8ud8:1Q (2.6) BS03 rna ? GO:0000049 ... P60489 38359125
    802999 8ud8:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 38359125
    803000 8ud8:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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