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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    802601 8ud6:2S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    802602 8ud6:2S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    802603 8ud6:2T (2.7) BS01 rna ? GO:0003735 ... P60490 38359125
    802604 8ud6:2T (2.7) BS02 rna ? GO:0003735 ... P60490 38359125
    802605 8ud6:2U (2.7) BS01 rna ? GO:0000027 ... P60491 38359125
    802606 8ud6:2U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    802607 8ud6:2V (2.7) BS01 rna ? GO:0003723 ... P60492 38359125
    802608 8ud6:2V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    802609 8ud6:2W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    802610 8ud6:2W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    802611 8ud6:2X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    802612 8ud6:2X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    802613 8ud6:2Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    802614 8ud6:2Y (2.7) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    802615 8ud6:2Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    802616 8ud6:2Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    802617 8ud6:2b (2.7) BS01 rna ? GO:0003735 ... P80371 38359125
    802618 8ud6:2c (2.7) BS01 rna ? GO:0003676 ... P80372 38359125
    802619 8ud6:2d (2.7) BS01 rna ? GO:0003723 ... P80373 38359125
    802620 8ud6:2d (2.7) BS02 MG ? GO:0003723 ... P80373 38359125
    802621 8ud6:2d (2.7) BS03 SF4 ? GO:0003723 ... P80373 38359125
    802622 8ud6:2e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    802623 8ud6:2e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    802624 8ud6:2f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    802625 8ud6:2f (2.7) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    802626 8ud6:2g (2.7) BS01 rna ? GO:0000028 ... P17291 38359125
    802627 8ud6:2g (2.7) BS02 rna ? GO:0000028 ... P17291 38359125
    802628 8ud6:2h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    802629 8ud6:2i (2.7) BS01 rna ? GO:0000049 ... P80374 38359125
    802630 8ud6:2i (2.7) BS02 rna ? GO:0000049 ... P80374 38359125
    802631 8ud6:2j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    802632 8ud6:2k (2.7) BS01 rna ? GO:0003735 ... P80376 38359125
    802633 8ud6:2k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    802634 8ud6:2l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    802635 8ud6:2l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    802636 8ud6:2l (2.7) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    802637 8ud6:2l (2.7) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    802638 8ud6:2m (2.7) BS01 rna ? GO:0000049 ... P80377 38359125
    802639 8ud6:2m (2.7) BS02 rna ? GO:0000049 ... P80377 38359125
    802640 8ud6:2n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    802641 8ud6:2n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    802642 8ud6:2o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    802643 8ud6:2o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    802644 8ud6:2p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    802645 8ud6:2q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    802646 8ud6:2q (2.7) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    802647 8ud6:2q (2.7) BS03 MG ? GO:0003735 ... P0DOY7 38359125
    802648 8ud6:2r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    802649 8ud6:2s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    802650 8ud6:2t (2.7) BS01 rna ? GO:0003723 ... P80380 38359125
    802651 8ud7:10 (2.55) BS01 rna ? GO:0003735 ... P60493 38359125
    802652 8ud7:10 (2.55) BS02 rna ? GO:0003735 ... P60493 38359125
    802653 8ud7:10 (2.55) BS03 MG ? GO:0003735 ... P60493 38359125
    802654 8ud7:10 (2.55) BS04 MG ? GO:0003735 ... P60493 38359125
    802655 8ud7:11 (2.55) BS01 rna ? GO:0003735 ... P60494 38359125
    802656 8ud7:11 (2.55) BS02 MG ? GO:0003735 ... P60494 38359125
    802657 8ud7:12 (2.55) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    802658 8ud7:12 (2.55) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    802659 8ud7:13 (2.55) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    802660 8ud7:13 (2.55) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    802661 8ud7:13 (2.55) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    802662 8ud7:14 (2.55) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    802663 8ud7:14 (2.55) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    802664 8ud7:15 (2.55) BS01 rna ? GO:0003735 ... P80339 38359125
    802665 8ud7:15 (2.55) BS02 MG ? GO:0003735 ... P80339 38359125
    802666 8ud7:15 (2.55) BS03 MG ? GO:0003735 ... P80339 38359125
    802667 8ud7:15 (2.55) BS04 ZN ? GO:0003735 ... P80339 38359125
    802668 8ud7:16 (2.55) BS01 rna ? GO:0000049 ... P35871 38359125
    802669 8ud7:16 (2.55) BS02 MG ? GO:0000049 ... P35871 38359125
    802670 8ud7:16 (2.55) BS03 ZN ? GO:0000049 ... P35871 38359125
    802671 8ud7:17 (2.55) BS01 rna ? GO:0003735 ... P80340 38359125
    802672 8ud7:17 (2.55) BS02 MG ? GO:0003735 ... P80340 38359125
    802673 8ud7:17 (2.55) BS03 MG ? GO:0003735 ... P80340 38359125
    802674 8ud7:18 (2.55) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    802675 8ud7:18 (2.55) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    802676 8ud7:18 (2.55) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    802677 8ud7:18 (2.55) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    802678 8ud7:19 (2.55) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    802679 8ud7:19 (2.55) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    802680 8ud7:1D (2.55) BS01 rna ? GO:0002181 ... P60405 38359125
    802681 8ud7:1D (2.55) BS02 rna ? GO:0002181 ... P60405 38359125
    802682 8ud7:1D (2.55) BS03 MG ? GO:0002181 ... P60405 38359125
    802683 8ud7:1D (2.55) BS04 MG ? GO:0002181 ... P60405 38359125
    802684 8ud7:1D (2.55) BS05 MG ? GO:0002181 ... P60405 38359125
    802685 8ud7:1D (2.55) BS06 MG ? GO:0002181 ... P60405 38359125
    802686 8ud7:1D (2.55) BS07 MG ? GO:0002181 ... P60405 38359125
    802687 8ud7:1D (2.55) BS08 MG ? GO:0002181 ... P60405 38359125
    802688 8ud7:1D (2.55) BS09 MG ? GO:0002181 ... P60405 38359125
    802689 8ud7:1D (2.55) BS10 MG ? GO:0002181 ... P60405 38359125
    802690 8ud7:1D (2.55) BS11 MG ? GO:0002181 ... P60405 38359125
    802691 8ud7:1D (2.55) BS12 MG ? GO:0002181 ... P60405 38359125
    802692 8ud7:1E (2.55) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    802693 8ud7:1E (2.55) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    802694 8ud7:1E (2.55) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    802695 8ud7:1E (2.55) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    802696 8ud7:1E (2.55) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    802697 8ud7:1E (2.55) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    802698 8ud7:1F (2.55) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    802699 8ud7:1F (2.55) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    802700 8ud7:1F (2.55) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    802701 8ud7:1F (2.55) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    802702 8ud7:1F (2.55) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    802703 8ud7:1F (2.55) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    802704 8ud7:1F (2.55) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    802705 8ud7:1F (2.55) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    802706 8ud7:1F (2.55) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    802707 8ud7:1F (2.55) BS10 MG ? GO:0003735 ... Q5SHN9 38359125
    802708 8ud7:1F (2.55) BS11 MG ? GO:0003735 ... Q5SHN9 38359125
    802709 8ud7:1F (2.55) BS12 MG ? GO:0003735 ... Q5SHN9 38359125
    802710 8ud7:1G (2.55) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    802711 8ud7:1G (2.55) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    802712 8ud7:1G (2.55) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    802713 8ud7:1G (2.55) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    802714 8ud7:1H (2.55) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    802715 8ud7:1I (2.55) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    802716 8ud7:1I (2.55) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    802717 8ud7:1N (2.55) BS01 rna ? GO:0003729 ... P60488 38359125
    802718 8ud7:1N (2.55) BS02 MG ? GO:0003729 ... P60488 38359125
    802719 8ud7:1N (2.55) BS03 MG ? GO:0003729 ... P60488 38359125
    802720 8ud7:1O (2.55) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    802721 8ud7:1O (2.55) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    802722 8ud7:1O (2.55) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    802723 8ud7:1O (2.55) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    802724 8ud7:1P (2.55) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    802725 8ud7:1P (2.55) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    802726 8ud7:1P (2.55) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    802727 8ud7:1P (2.55) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    802728 8ud7:1P (2.55) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    802729 8ud7:1P (2.55) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    802730 8ud7:1Q (2.55) BS01 rna ? GO:0000049 ... P60489 38359125
    802731 8ud7:1Q (2.55) BS02 rna ? GO:0000049 ... P60489 38359125
    802732 8ud7:1Q (2.55) BS03 rna ? GO:0000049 ... P60489 38359125
    802733 8ud7:1Q (2.55) BS04 MG ? GO:0000049 ... P60489 38359125
    802734 8ud7:1Q (2.55) BS05 MG ? GO:0000049 ... P60489 38359125
    802735 8ud7:1Q (2.55) BS06 MG ? GO:0000049 ... P60489 38359125
    802736 8ud7:1Q (2.55) BS07 MG ? GO:0000049 ... P60489 38359125
    802737 8ud7:1Q (2.55) BS08 MG ? GO:0000049 ... P60489 38359125
    802738 8ud7:1R (2.55) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    802739 8ud7:1R (2.55) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    802740 8ud7:1R (2.55) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    802741 8ud7:1S (2.55) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    802742 8ud7:1S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    802743 8ud7:1S (2.55) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    802744 8ud7:1S (2.55) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    802745 8ud7:1T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    802746 8ud7:1T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    802747 8ud7:1U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    802748 8ud7:1U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    802749 8ud7:1U (2.55) BS03 MG ? GO:0000027 ... P60491 38359125
    802750 8ud7:1U (2.55) BS04 MG ? GO:0000027 ... P60491 38359125
    802751 8ud7:1U (2.55) BS05 MG ? GO:0000027 ... P60491 38359125
    802752 8ud7:1U (2.55) BS06 MG ? GO:0000027 ... P60491 38359125
    802753 8ud7:1U (2.55) BS07 MG ? GO:0000027 ... P60491 38359125
    802754 8ud7:1U (2.55) BS08 MG ? GO:0000027 ... P60491 38359125
    802755 8ud7:1U (2.55) BS09 MG ? GO:0000027 ... P60491 38359125
    802756 8ud7:1U (2.55) BS10 MG ? GO:0000027 ... P60491 38359125
    802757 8ud7:1U (2.55) BS11 MG ? GO:0000027 ... P60491 38359125
    802758 8ud7:1V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    802759 8ud7:1V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    802760 8ud7:1V (2.55) BS03 MG ? GO:0003723 ... P60492 38359125
    802761 8ud7:1V (2.55) BS04 MG ? GO:0003723 ... P60492 38359125
    802762 8ud7:1V (2.55) BS05 MG ? GO:0003723 ... P60492 38359125
    802763 8ud7:1V (2.55) BS06 MG ? GO:0003723 ... P60492 38359125
    802764 8ud7:1V (2.55) BS07 MG ? GO:0003723 ... P60492 38359125
    802765 8ud7:1W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    802766 8ud7:1W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    802767 8ud7:1W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    802768 8ud7:1W (2.55) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    802769 8ud7:1W (2.55) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    802770 8ud7:1W (2.55) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    802771 8ud7:1X (2.55) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    802772 8ud7:1X (2.55) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    802773 8ud7:1X (2.55) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    802774 8ud7:1X (2.55) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    802775 8ud7:1X (2.55) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    802776 8ud7:1X (2.55) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    802777 8ud7:1Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    802778 8ud7:1Y (2.55) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    802779 8ud7:1Y (2.55) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    802780 8ud7:1Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    802781 8ud7:1Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    802782 8ud7:1b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    802783 8ud7:1c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    802784 8ud7:1d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    802785 8ud7:1d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    802786 8ud7:1e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    802787 8ud7:1e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    802788 8ud7:1f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    802789 8ud7:1g (2.55) BS01 rna ? GO:0000028 ... P17291 38359125
    802790 8ud7:1g (2.55) BS02 rna ? GO:0000028 ... P17291 38359125
    802791 8ud7:1h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    802792 8ud7:1i (2.55) BS01 rna ? GO:0000049 ... P80374 38359125
    802793 8ud7:1i (2.55) BS02 rna ? GO:0000049 ... P80374 38359125
    802794 8ud7:1j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    802795 8ud7:1k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    802796 8ud7:1k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    802797 8ud7:1l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    802798 8ud7:1l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    802799 8ud7:1m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    802800 8ud7:1m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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