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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    802401 8ud6:10 (2.7) BS01 rna ? GO:0003735 ... P60493 38359125
    802402 8ud6:10 (2.7) BS02 rna ? GO:0003735 ... P60493 38359125
    802403 8ud6:10 (2.7) BS03 MG ? GO:0003735 ... P60493 38359125
    802404 8ud6:10 (2.7) BS04 MG ? GO:0003735 ... P60493 38359125
    802405 8ud6:10 (2.7) BS05 MG ? GO:0003735 ... P60493 38359125
    802406 8ud6:11 (2.7) BS01 rna ? GO:0003735 ... P60494 38359125
    802407 8ud6:11 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    802408 8ud6:12 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    802409 8ud6:12 (2.7) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    802410 8ud6:13 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    802411 8ud6:13 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    802412 8ud6:13 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    802413 8ud6:13 (2.7) BS04 MG ? GO:0003735 ... Q5SHQ6 38359125
    802414 8ud6:14 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    802415 8ud6:14 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    802416 8ud6:15 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    802417 8ud6:15 (2.7) BS02 MG ? GO:0003735 ... P80339 38359125
    802418 8ud6:15 (2.7) BS03 ZN ? GO:0003735 ... P80339 38359125
    802419 8ud6:16 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    802420 8ud6:16 (2.7) BS02 MG ? GO:0000049 ... P35871 38359125
    802421 8ud6:16 (2.7) BS03 ZN ? GO:0000049 ... P35871 38359125
    802422 8ud6:17 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    802423 8ud6:17 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    802424 8ud6:17 (2.7) BS03 MG ? GO:0003735 ... P80340 38359125
    802425 8ud6:18 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    802426 8ud6:18 (2.7) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    802427 8ud6:18 (2.7) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    802428 8ud6:19 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    802429 8ud6:19 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    802430 8ud6:1D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    802431 8ud6:1D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    802432 8ud6:1D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    802433 8ud6:1D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    802434 8ud6:1D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    802435 8ud6:1D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    802436 8ud6:1D (2.7) BS07 MG ? GO:0002181 ... P60405 38359125
    802437 8ud6:1D (2.7) BS08 MG ? GO:0002181 ... P60405 38359125
    802438 8ud6:1D (2.7) BS09 MG ? GO:0002181 ... P60405 38359125
    802439 8ud6:1D (2.7) BS10 MG ? GO:0002181 ... P60405 38359125
    802440 8ud6:1D (2.7) BS11 MG ? GO:0002181 ... P60405 38359125
    802441 8ud6:1D (2.7) BS12 MG ? GO:0002181 ... P60405 38359125
    802442 8ud6:1D (2.7) BS13 MG ? GO:0002181 ... P60405 38359125
    802443 8ud6:1E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    802444 8ud6:1E (2.7) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    802445 8ud6:1E (2.7) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    802446 8ud6:1E (2.7) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    802447 8ud6:1E (2.7) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    802448 8ud6:1F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    802449 8ud6:1F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    802450 8ud6:1F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    802451 8ud6:1F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    802452 8ud6:1F (2.7) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    802453 8ud6:1F (2.7) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    802454 8ud6:1F (2.7) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    802455 8ud6:1F (2.7) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    802456 8ud6:1F (2.7) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    802457 8ud6:1G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    802458 8ud6:1G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    802459 8ud6:1G (2.7) BS03 MG ? GO:0000049 ... Q5SHQ0 38359125
    802460 8ud6:1H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    802461 8ud6:1I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    802462 8ud6:1N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    802463 8ud6:1N (2.7) BS02 MG ? GO:0003729 ... P60488 38359125
    802464 8ud6:1O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    802465 8ud6:1O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    802466 8ud6:1O (2.7) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    802467 8ud6:1O (2.7) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    802468 8ud6:1P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    802469 8ud6:1P (2.7) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    802470 8ud6:1P (2.7) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    802471 8ud6:1P (2.7) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    802472 8ud6:1P (2.7) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    802473 8ud6:1P (2.7) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    802474 8ud6:1Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    802475 8ud6:1Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    802476 8ud6:1Q (2.7) BS03 rna ? GO:0000049 ... P60489 38359125
    802477 8ud6:1Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    802478 8ud6:1Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    802479 8ud6:1Q (2.7) BS06 MG ? GO:0000049 ... P60489 38359125
    802480 8ud6:1Q (2.7) BS07 MG ? GO:0000049 ... P60489 38359125
    802481 8ud6:1R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    802482 8ud6:1R (2.7) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    802483 8ud6:1R (2.7) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    802484 8ud6:1S (2.7) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    802485 8ud6:1S (2.7) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    802486 8ud6:1S (2.7) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    802487 8ud6:1T (2.7) BS01 rna ? GO:0003735 ... P60490 38359125
    802488 8ud6:1T (2.7) BS02 rna ? GO:0003735 ... P60490 38359125
    802489 8ud6:1T (2.7) BS03 MG ? GO:0003735 ... P60490 38359125
    802490 8ud6:1U (2.7) BS01 rna ? GO:0000027 ... P60491 38359125
    802491 8ud6:1U (2.7) BS02 MG ? GO:0000027 ... P60491 38359125
    802492 8ud6:1U (2.7) BS03 MG ? GO:0000027 ... P60491 38359125
    802493 8ud6:1U (2.7) BS04 MG ? GO:0000027 ... P60491 38359125
    802494 8ud6:1U (2.7) BS05 MG ? GO:0000027 ... P60491 38359125
    802495 8ud6:1U (2.7) BS06 MG ? GO:0000027 ... P60491 38359125
    802496 8ud6:1U (2.7) BS07 MG ? GO:0000027 ... P60491 38359125
    802497 8ud6:1U (2.7) BS08 MG ? GO:0000027 ... P60491 38359125
    802498 8ud6:1U (2.7) BS09 MG ? GO:0000027 ... P60491 38359125
    802499 8ud6:1U (2.7) BS10 MG ? GO:0000027 ... P60491 38359125
    802500 8ud6:1V (2.7) BS01 rna ? GO:0003723 ... P60492 38359125
    802501 8ud6:1V (2.7) BS02 MG ? GO:0003723 ... P60492 38359125
    802502 8ud6:1V (2.7) BS03 MG ? GO:0003723 ... P60492 38359125
    802503 8ud6:1V (2.7) BS04 MG ? GO:0003723 ... P60492 38359125
    802504 8ud6:1V (2.7) BS05 MG ? GO:0003723 ... P60492 38359125
    802505 8ud6:1V (2.7) BS06 MG ? GO:0003723 ... P60492 38359125
    802506 8ud6:1V (2.7) BS07 MG ? GO:0003723 ... P60492 38359125
    802507 8ud6:1W (2.7) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    802508 8ud6:1W (2.7) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    802509 8ud6:1W (2.7) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    802510 8ud6:1W (2.7) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    802511 8ud6:1W (2.7) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    802512 8ud6:1X (2.7) BS01 rna ? GO:0000027 ... Q5SHP0 38359125
    802513 8ud6:1X (2.7) BS02 MG ? GO:0000027 ... Q5SHP0 38359125
    802514 8ud6:1X (2.7) BS03 MG ? GO:0000027 ... Q5SHP0 38359125
    802515 8ud6:1X (2.7) BS04 MG ? GO:0000027 ... Q5SHP0 38359125
    802516 8ud6:1X (2.7) BS05 MG ? GO:0000027 ... Q5SHP0 38359125
    802517 8ud6:1X (2.7) BS06 MG ? GO:0000027 ... Q5SHP0 38359125
    802518 8ud6:1Y (2.7) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    802519 8ud6:1Y (2.7) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    802520 8ud6:1Y (2.7) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    802521 8ud6:1Z (2.7) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    802522 8ud6:1Z (2.7) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    802523 8ud6:1b (2.7) BS01 rna ? GO:0003735 ... P80371 38359125
    802524 8ud6:1c (2.7) BS01 rna ? GO:0003676 ... P80372 38359125
    802525 8ud6:1d (2.7) BS01 rna ? GO:0003723 ... P80373 38359125
    802526 8ud6:1d (2.7) BS02 SF4 ? GO:0003723 ... P80373 38359125
    802527 8ud6:1e (2.7) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    802528 8ud6:1e (2.7) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    802529 8ud6:1e (2.7) BS03 MG ? GO:0003723 ... Q5SHQ5 38359125
    802530 8ud6:1f (2.7) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    802531 8ud6:1g (2.7) BS01 rna ? GO:0000028 ... P17291 38359125
    802532 8ud6:1g (2.7) BS02 rna ? GO:0000028 ... P17291 38359125
    802533 8ud6:1h (2.7) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    802534 8ud6:1i (2.7) BS01 rna ? GO:0000049 ... P80374 38359125
    802535 8ud6:1i (2.7) BS02 rna ? GO:0000049 ... P80374 38359125
    802536 8ud6:1j (2.7) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    802537 8ud6:1k (2.7) BS01 rna ? GO:0003735 ... P80376 38359125
    802538 8ud6:1k (2.7) BS02 MG ? GO:0003735 ... P80376 38359125
    802539 8ud6:1l (2.7) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    802540 8ud6:1l (2.7) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    802541 8ud6:1m (2.7) BS01 rna ? GO:0000049 ... P80377 38359125
    802542 8ud6:1m (2.7) BS02 rna ? GO:0000049 ... P80377 38359125
    802543 8ud6:1m (2.7) BS03 rna ? GO:0000049 ... P80377 38359125
    802544 8ud6:1m (2.7) BS04 MG ? GO:0000049 ... P80377 38359125
    802545 8ud6:1n (2.7) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    802546 8ud6:1n (2.7) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    802547 8ud6:1o (2.7) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    802548 8ud6:1o (2.7) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    802549 8ud6:1p (2.7) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    802550 8ud6:1q (2.7) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    802551 8ud6:1r (2.7) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    802552 8ud6:1s (2.7) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    802553 8ud6:1t (2.7) BS01 rna ? GO:0003723 ... P80380 38359125
    802554 8ud6:1t (2.7) BS02 MG ? GO:0003723 ... P80380 38359125
    802555 8ud6:20 (2.7) BS01 rna ? GO:0003735 ... P60493 38359125
    802556 8ud6:20 (2.7) BS02 rna ? GO:0003735 ... P60493 38359125
    802557 8ud6:20 (2.7) BS03 rna ? GO:0003735 ... P60493 38359125
    802558 8ud6:21 (2.7) BS01 rna ? GO:0003735 ... P60494 38359125
    802559 8ud6:21 (2.7) BS02 MG ? GO:0003735 ... P60494 38359125
    802560 8ud6:22 (2.7) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    802561 8ud6:23 (2.7) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    802562 8ud6:23 (2.7) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    802563 8ud6:23 (2.7) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    802564 8ud6:24 (2.7) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    802565 8ud6:24 (2.7) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    802566 8ud6:25 (2.7) BS01 rna ? GO:0003735 ... P80339 38359125
    802567 8ud6:25 (2.7) BS02 ZN ? GO:0003735 ... P80339 38359125
    802568 8ud6:26 (2.7) BS01 rna ? GO:0000049 ... P35871 38359125
    802569 8ud6:26 (2.7) BS02 ZN ? GO:0000049 ... P35871 38359125
    802570 8ud6:27 (2.7) BS01 rna ? GO:0003735 ... P80340 38359125
    802571 8ud6:27 (2.7) BS02 MG ? GO:0003735 ... P80340 38359125
    802572 8ud6:28 (2.7) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    802573 8ud6:29 (2.7) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    802574 8ud6:29 (2.7) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    802575 8ud6:2D (2.7) BS01 rna ? GO:0002181 ... P60405 38359125
    802576 8ud6:2D (2.7) BS02 rna ? GO:0002181 ... P60405 38359125
    802577 8ud6:2D (2.7) BS03 MG ? GO:0002181 ... P60405 38359125
    802578 8ud6:2D (2.7) BS04 MG ? GO:0002181 ... P60405 38359125
    802579 8ud6:2D (2.7) BS05 MG ? GO:0002181 ... P60405 38359125
    802580 8ud6:2D (2.7) BS06 MG ? GO:0002181 ... P60405 38359125
    802581 8ud6:2E (2.7) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    802582 8ud6:2F (2.7) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    802583 8ud6:2F (2.7) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    802584 8ud6:2F (2.7) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    802585 8ud6:2F (2.7) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    802586 8ud6:2G (2.7) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    802587 8ud6:2G (2.7) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    802588 8ud6:2G (2.7) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    802589 8ud6:2H (2.7) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    802590 8ud6:2I (2.7) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    802591 8ud6:2N (2.7) BS01 rna ? GO:0003729 ... P60488 38359125
    802592 8ud6:2O (2.7) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    802593 8ud6:2O (2.7) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    802594 8ud6:2P (2.7) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    802595 8ud6:2Q (2.7) BS01 rna ? GO:0000049 ... P60489 38359125
    802596 8ud6:2Q (2.7) BS02 rna ? GO:0000049 ... P60489 38359125
    802597 8ud6:2Q (2.7) BS03 MG ? GO:0000049 ... P60489 38359125
    802598 8ud6:2Q (2.7) BS04 MG ? GO:0000049 ... P60489 38359125
    802599 8ud6:2Q (2.7) BS05 MG ? GO:0000049 ... P60489 38359125
    802600 8ud6:2R (2.7) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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