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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801601 8u2d:A (1.95) BS01 UQX 2.7.10.2 GO:0004672 ... Q06187 38300987
    801602 8u2e:A (1.9) BS01 UP9 2.7.10.2 GO:0004672 ... Q06187 38300987
    801603 8u2m:A (1.79) BS01 peptide 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801604 8u2m:A (1.79) BS02 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801605 8u2m:A (1.79) BS03 MRY 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801606 8u2m:B (1.79) BS01 MRY 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801607 8u2m:B (1.79) BS02 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801608 8u2m:B (1.79) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801609 8u2m:B (1.79) BS04 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801610 8u2m:C (1.79) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801611 8u2m:C (1.79) BS02 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801612 8u2m:C (1.79) BS03 TFA 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801613 8u2o:A (2.15) BS01 V3O 2.7.11.22 GO:0004672 ... Q8IDW1 N/A
    801614 8u2o:B (2.15) BS01 V3O 2.7.11.22 GO:0004672 ... Q8IDW1 N/A
    801615 8u2p:A (2.25) BS01 G5A 6.1.1.14 GO:0000166 ... P9WFV7 N/A
    801616 8u2q:A (2.45) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    801617 8u2q:B (2.45) BS01 ZN 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    801618 8u2q:B (2.45) BS02 G5A 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    801619 8u2r:A (1.55) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    801620 8u2s:A (2.52) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    801621 8u2s:B (2.52) BS01 WTA 6.2.1.1 GO:0003987 ... A4I093 N/A
    801622 8u2t:A (1.65) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    801623 8u2t:A (1.65) BS02 COA 6.2.1.1 GO:0003987 ... A4I093 N/A
    801624 8u2u:A (1.97) BS01 AMP 6.2.1.1 GO:0003987 ... A4I093 N/A
    801625 8u2u:A (1.97) BS02 COA 6.2.1.1 GO:0003987 ... A4I093 N/A
    801626 8u2w:A (2.35) BS01 NAP N/A GO:0004345 ... N/A N/A
    801627 8u2w:B (2.35) BS01 NAP N/A GO:0004345 ... N/A N/A
    801628 8u2z:A (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    801629 8u2z:A (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    801630 8u2z:A (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    801631 8u2z:A (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    801632 8u2z:B (3.6) BS01 CLR ? GO:0005216 ... O35433 38698206
    801633 8u2z:B (3.6) BS02 PIO ? GO:0005216 ... O35433 38698206
    801634 8u2z:B (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    801635 8u2z:B (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    801636 8u2z:C (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    801637 8u2z:C (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    801638 8u2z:C (3.6) BS03 CLR ? GO:0005216 ... O35433 38698206
    801639 8u2z:C (3.6) BS04 PIO ? GO:0005216 ... O35433 38698206
    801640 8u2z:D (3.6) BS01 PIO ? GO:0005216 ... O35433 38698206
    801641 8u2z:D (3.6) BS02 CLR ? GO:0005216 ... O35433 38698206
    801642 8u2z:D (3.6) BS03 PIO ? GO:0005216 ... O35433 38698206
    801643 8u2z:D (3.6) BS04 CLR ? GO:0005216 ... O35433 38698206
    801644 8u30:A (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    801645 8u30:B (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    801646 8u30:C (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    801647 8u30:D (3.0) BS01 PIO ? GO:0000122 ... O35433 38698206
    801648 8u36:A (2.6) BS01 peptide ? GO:0005737 ... P52293 N/A
    801649 8u36:A (2.6) BS02 peptide ? GO:0005737 ... P52293 N/A
    801650 8u37:A (2.48) BS01 V5U 2.7.11.13 GO:0004672 ... P17252 38198520
    801651 8u3a:A (2.3) BS01 VPN ? GO:0005216 ... O35433 38698206
    801652 8u3a:D (2.3) BS01 VPN ? GO:0005216 ... O35433 38698206
    801653 8u3b:A (3.23) BS01 dna 2.7.7.6 GO:0000345 ... P0A7Z4 38197271
    801654 8u3b:C (3.23) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38197271
    801655 8u3b:C (3.23) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38197271
    801656 8u3b:C (3.23) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 38197271
    801657 8u3b:D (3.23) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    801658 8u3b:D (3.23) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    801659 8u3b:D (3.23) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    801660 8u3b:D (3.23) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    801661 8u3b:D (3.23) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38197271
    801662 8u3b:F (3.23) BS01 dna ? GO:0000345 ... P00579 38197271
    801663 8u3b:F (3.23) BS02 dna ? GO:0000345 ... P00579 38197271
    801664 8u3b:G (3.23) BS01 dna ? GO:0003677 ... P0AF28 38197271
    801665 8u3b:G (3.23) BS02 dna ? GO:0003677 ... P0AF28 38197271
    801666 8u3b:H (3.23) BS01 dna ? GO:0003677 ... P0AF28 38197271
    801667 8u3b:H (3.23) BS02 dna ? GO:0003677 ... P0AF28 38197271
    801668 8u3c:A (2.3) BS01 VPN ? GO:0000122 ... O35433 38698206
    801669 8u3c:A (2.3) BS02 3PH ? GO:0000122 ... O35433 38698206
    801670 8u3c:D (2.3) BS01 3PH ? GO:0000122 ... O35433 38698206
    801671 8u3g:A (3.42) BS01 ASP ? GO:0005351 ... Q9NRA2 N/A
    801672 8u3g:A (3.42) BS02 GLU ? GO:0005351 ... Q9NRA2 N/A
    801673 8u3h:A (3.67) BS01 VP1 ? GO:0005351 ... Q9NRA2 N/A
    801674 8u3h:A (3.67) BS02 LEU ? GO:0005351 ... Q9NRA2 N/A
    801675 8u3n:A (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801676 8u3n:A (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801677 8u3n:B (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801678 8u3n:B (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801679 8u3n:C (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801680 8u3n:C (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0A3E2YLT4 N/A
    801681 8u3y:A (3.1) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801682 8u3y:A (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801683 8u3y:A (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801684 8u3y:A (3.1) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801685 8u3y:A (3.1) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801686 8u3y:A (3.1) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801687 8u3y:A (3.1) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801688 8u3z:A (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    801689 8u3z:A (3.6) BS02 MG 3.6.5.- GO:0000226 ... P68363 38658656
    801690 8u3z:B (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    801691 8u3z:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    801692 8u3z:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    801693 8u3z:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    801694 8u3z:N (3.6) BS01 ATP 6.3.2.- GO:0001578 ... A4Q9E8 38658656
    801695 8u43:A (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    801696 8u43:B (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    801697 8u43:C (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    801698 8u43:D (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    801699 8u45:C (2.1) BS01 CA 3.4.21.63 GO:0004252 ... P28296 37864071
    801700 8u48:A (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    801701 8u48:A (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    801702 8u48:A (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    801703 8u48:A (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    801704 8u48:A (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    801705 8u48:A (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    801706 8u48:B (1.9) BS01 BMA ? GO:0004553 ... Q8A889 38879612
    801707 8u48:B (1.9) BS02 MAN ? GO:0004553 ... Q8A889 38879612
    801708 8u48:B (1.9) BS03 MAN ? GO:0004553 ... Q8A889 38879612
    801709 8u48:B (1.9) BS04 MAN ? GO:0004553 ... Q8A889 38879612
    801710 8u48:B (1.9) BS05 MAN ? GO:0004553 ... Q8A889 38879612
    801711 8u48:B (1.9) BS06 MAN ? GO:0004553 ... Q8A889 38879612
    801712 8u49:A (1.8) BS01 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801713 8u49:A (1.8) BS02 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801714 8u4a:A (1.97) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801715 8u4a:A (1.97) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801716 8u4a:A (1.97) BS03 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801717 8u4a:A (1.97) BS04 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801718 8u4d:A (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    801719 8u4d:A (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    801720 8u4d:B (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    801721 8u4d:B (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    801722 8u4d:C (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    801723 8u4d:C (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    801724 8u4d:D (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    801725 8u4d:D (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    801726 8u4f:A (2.01) BS01 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801727 8u4f:A (2.01) BS02 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801728 8u4f:A (2.01) BS03 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801729 8u4f:A (2.01) BS04 BGC 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801730 8u4f:A (2.01) BS05 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801731 8u4f:A (2.01) BS06 CA 3.2.1.4 GO:0003824 ... Q65JI9 38286536
    801732 8u4n:R (2.72) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801733 8u4o:R (3.29) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801734 8u4p:R (3.15) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801735 8u4p:R (3.15) BS02 VH6 ? GO:0001618 ... P42212
    P61073    		 N/A
    801736 8u4q:R (3.36) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801737 8u4r:R (3.1) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801738 8u4s:C (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801739 8u4s:C (3.35) BS02 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    801740 8u4s:C (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801741 8u4s:C (3.35) BS04 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    801742 8u4s:G (3.35) BS01 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    801743 8u4s:G (3.35) BS02 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801744 8u4s:G (3.35) BS03 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    801745 8u4s:G (3.35) BS04 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801746 8u4s:R (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801747 8u4s:R (3.35) BS02 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    801748 8u4s:R (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073    		 N/A
    801749 8u4s:R (3.35) BS04 D21 ? GO:0001618 ... P42212
    P61073    		 N/A
    801750 8u4t:AA (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    801751 8u4t:AA (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    801752 8u4t:AA (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    801753 8u4t:I (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    801754 8u4t:I (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    801755 8u4t:I (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    801756 8u4t:Q (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    801757 8u4t:Q (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    801758 8u4t:Q (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    801759 8u4t:R (3.38) BS01 CLR ? GO:0001618 ... P61073 N/A
    801760 8u4t:R (3.38) BS02 D21 ? GO:0001618 ... P61073 N/A
    801761 8u4t:R (3.38) BS03 CLR ? GO:0001618 ... P61073 N/A
    801762 8u4v:A (2.99) BS01 AV0 ? GO:0004888 ... O14493 38886509
    801763 8u4w:A (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    801764 8u4w:B (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    801765 8u4w:C (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    801766 8u4w:D (3.02) BS01 VHU 2.4.2.-
    2.4.2.30    		 GO:0003950 ... P09874 38482564
    801767 8u4z:A (2.39) BS01 MH0 N/A GO:0004601 ... N/A 38519509
    801768 8u53:A (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    801769 8u53:A (2.6) BS02 82T ? GO:0000325 ... Q9C8G5 38592763
    801770 8u53:B (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    801771 8u53:B (2.6) BS02 82T ? GO:0000325 ... Q9C8G5 38592763
    801772 8u5a:A (2.0) BS01 HEM N/A GO:0015671 ... N/A 38194293
    801773 8u5a:B (2.0) BS01 HEM N/A GO:0015671 ... N/A 38194293
    801774 8u5b:A (5.3) BS01 AV0 ? GO:0004888 ... O14493 38886509
    801775 8u5g:A (3.2) BS01 peptide 3.1.3.16 GO:0016787 ... P62136 38042495
    801776 8u5g:A (3.2) BS02 FE 3.1.3.16 GO:0016787 ... P62136 38042495
    801777 8u5h:I (3.23) BS01 dna ? GO:0000786 ... P02302 N/A
    801778 8u5h:I (3.23) BS02 dna ? GO:0000786 ... P02302 N/A
    801779 8u5h:J (3.23) BS01 dna ? GO:0000786 ... P62799 N/A
    801780 8u5h:J (3.23) BS02 dna ? GO:0000786 ... P62799 N/A
    801781 8u5h:K (3.23) BS01 peptide ? GO:0000786 ... P06897 N/A
    801782 8u5h:K (3.23) BS02 dna ? GO:0000786 ... P06897 N/A
    801783 8u5h:K (3.23) BS03 dna ? GO:0000786 ... P06897 N/A
    801784 8u5h:M (3.23) BS01 peptide ? GO:0000786 ... P02281 N/A
    801785 8u5h:M (3.23) BS02 dna ? GO:0000786 ... P02281 N/A
    801786 8u5h:M (3.23) BS03 dna ? GO:0000786 ... P02281 N/A
    801787 8u5h:O (3.23) BS01 peptide ? GO:0000786 ... P02302 N/A
    801788 8u5h:O (3.23) BS02 dna ? GO:0000786 ... P02302 N/A
    801789 8u5h:O (3.23) BS03 dna ? GO:0000786 ... P02302 N/A
    801790 8u5h:Q (3.23) BS01 dna ? GO:0000786 ... P62799 N/A
    801791 8u5h:Q (3.23) BS02 dna ? GO:0000786 ... P62799 N/A
    801792 8u5h:R (3.23) BS01 dna ? GO:0000786 ... P06897 N/A
    801793 8u5h:R (3.23) BS02 dna ? GO:0000786 ... P06897 N/A
    801794 8u5h:S (3.23) BS01 dna ? GO:0000786 ... P02281 N/A
    801795 8u5h:S (3.23) BS02 dna ? GO:0000786 ... P02281 N/A
    801796 8u5y:A (3.01) BS01 dna ? GO:0003677 ... Q6NSI4 37786681
    801797 8u5y:B (3.01) BS01 dna ? GO:0003677 ... Q6NSI4 37786681
    801798 8u5y:C (3.01) BS01 dna ? GO:0003677 ... Q6NSI4 37786681
    801799 8u61:A (4.0) BS01 dna ? GO:0003677 ... Q6NSI4 38466836
    801800 8u61:B (4.0) BS01 dna ? GO:0003677 ... Q6NSI4 38466836
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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