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●TM-score ●TM-align ●US-align ●MM-align ●RNA-align ●NW-align ●LS-align ●EDTSurf ●MVP ●MVP-Fit ●SPICKER ●HAAD ●PSSpred ●3DRobot ●MR-REX ●I-TASSER-MR ●SVMSEQ ●NeBcon ●ResPRE ●TripletRes ●DeepPotential ●WDL-RF ●ATPbind ●DockRMSD ●DeepMSA ●FASPR ●EM-Refiner ●GPU-I-TASSER

●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801401 8tz1:B (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801402 8tz1:B (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801403 8tz1:B (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    801404 8tz1:C (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    801405 8tz1:C (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801406 8tz1:C (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801407 8tz1:C (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801408 8tz1:C (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    801409 8tz2:A (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    801410 8tz2:A (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801411 8tz2:B (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    801412 8tz2:B (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801413 8tz2:C (2.8) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    801414 8tz2:C (2.8) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801415 8tz3:A (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    801416 8tz3:A (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801417 8tz3:A (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801418 8tz3:B (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    801419 8tz3:B (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801420 8tz3:B (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801421 8tz3:C (2.31) BS01 LBN ? GO:0005337 ... F1MGR1 38418906
    801422 8tz3:C (2.31) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801423 8tz3:C (2.31) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801424 8tz4:A (3.23) BS01 U08 ? GO:0005337 ... F1MGR1 38418906
    801425 8tz5:A (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    801426 8tz5:A (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801427 8tz5:A (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801428 8tz5:A (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801429 8tz5:A (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    801430 8tz5:B (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    801431 8tz5:B (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801432 8tz5:B (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801433 8tz5:B (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801434 8tz5:B (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    801435 8tz5:C (2.74) BS01 U56 ? GO:0005337 ... F1MGR1 38418906
    801436 8tz5:C (2.74) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801437 8tz5:C (2.74) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801438 8tz5:C (2.74) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801439 8tz5:C (2.74) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    801440 8tz6:A (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    801441 8tz6:A (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801442 8tz6:A (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801443 8tz6:A (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801444 8tz6:B (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    801445 8tz6:B (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801446 8tz6:B (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801447 8tz6:B (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801448 8tz6:C (2.69) BS01 U7I ? GO:0005337 ... F1MGR1 38418906
    801449 8tz6:C (2.69) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801450 8tz6:C (2.69) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801451 8tz6:C (2.69) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801452 8tz7:A (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801453 8tz7:A (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801454 8tz7:B (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801455 8tz7:B (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801456 8tz7:C (3.0) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801457 8tz7:C (3.0) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801458 8tz8:A (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801459 8tz8:A (3.19) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801460 8tz8:B (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801461 8tz8:C (3.19) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801462 8tz8:C (3.19) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801463 8tz9:A (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801464 8tz9:B (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801465 8tz9:C (3.67) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801466 8tza:A (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801467 8tza:B (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801468 8tza:C (3.43) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801469 8tzb:A (3.1) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    801470 8tzc:A (2.7) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    801471 8tzc:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    801472 8tzd:A (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801473 8tzd:A (3.2) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801474 8tzd:B (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801475 8tzd:C (3.2) BS01 XMO ? GO:0005337 ... F1MGR1 38418906
    801476 8tze:A (2.9) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    801477 8tzf:A (3.4) BS01 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    801478 8tzf:A (3.4) BS02 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    801479 8tzg:A (2.7) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    801480 8tzg:A (2.7) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    801481 8tzg:A (2.7) BS03 MG 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    801482 8tzh:A (3.9) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    801483 8tzh:A (3.9) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    801484 8tzj:A (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    801485 8tzj:B (3.51) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    801486 8tzk:A (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    801487 8tzk:B (3.55) BS01 ADP ? GO:0005524 ... Q9KVJ5 38070498
    801488 8tzl:A (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    801489 8tzl:B (3.55) BS01 ADP ? GO:0005524 ... A0A085R4L6 38070498
    801490 8tzo:C (3.1) BS01 BMA ? GO:0005509 ... P27797 37852257
    801491 8tzo:C (3.1) BS02 MAN ? GO:0005509 ... P27797 37852257
    801492 8tzo:C (3.1) BS03 MAN ? GO:0005509 ... P27797 37852257
    801493 8tzo:C (3.1) BS04 GLC ? GO:0005509 ... P27797 37852257
    801494 8tzo:C (3.1) BS05 CA ? GO:0005509 ... P27797 37852257
    801495 8tzr:C (3.5) BS01 BMA ? GO:0005509 ... P27797 N/A
    801496 8tzr:C (3.5) BS02 MAN ? GO:0005509 ... P27797 N/A
    801497 8tzr:C (3.5) BS03 MAN ? GO:0005509 ... P27797 N/A
    801498 8tzz:A (3.56) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801499 8tzz:A (3.56) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801500 8tzz:A (3.56) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801501 8tzz:A (3.56) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    801502 8u0j:A (3.1) BS01 dna N/A GO:0003674 ... Q9KR73 38740055
    801503 8u0j:A (3.1) BS02 dna N/A GO:0003674 ... Q9KR73 38740055
    801504 8u0j:A (3.1) BS03 dna N/A GO:0003674 ... Q9KR73 38740055
    801505 8u0k:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801506 8u0k:A (2.5) BS02 4LR 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801507 8u0k:B (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801508 8u0k:B (2.5) BS02 4LR 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801509 8u0l:A (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801510 8u0l:A (2.8) BS02 U4R 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801511 8u0l:B (2.8) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801512 8u0l:B (2.8) BS02 U4R 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801513 8u0m:A (2.54) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801514 8u0m:A (2.54) BS02 U5O 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801515 8u0m:B (2.54) BS01 ATP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801516 8u0m:B (2.54) BS02 U5O 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801517 8u0n:A (2.5) BS01 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801518 8u0n:A (2.5) BS02 U69 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801519 8u0n:B (2.5) BS01 U69 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801520 8u0n:B (2.5) BS02 ADP 2.7.4.26 GO:0005524 ... W0I5G2 38333996
    801521 8u0o:A (2.05) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    801522 8u0o:A (2.05) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    801523 8u0p:A (1.9) BS01 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    801524 8u0p:A (1.9) BS02 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    801525 8u0p:A (1.9) BS03 dna 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    801526 8u0p:A (1.9) BS04 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    801527 8u0p:A (1.9) BS05 MG 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    801528 8u0p:A (1.9) BS06 DUP 2.7.7.7
    4.2.99.-    		 GO:0003677 ... Q9UGP5 38428373
    801529 8u0q:A (1.69) BS01 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    801530 8u0q:A (1.69) BS02 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    801531 8u0q:A (1.69) BS03 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    801532 8u0q:B (1.69) BS01 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    801533 8u0q:B (1.69) BS02 U4I 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    801534 8u0q:B (1.69) BS03 FAD 1.8.1.4 GO:0004148 ... P9WHH9 38144256
    801535 8u0t:A (3.2) BS01 ZN 3.4.-.-
    3.4.17.23    		 GO:0006508 ... A0A0N7IQX6 37989312
    801536 8u0v:A (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    801537 8u0v:A (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    801538 8u0v:B (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    801539 8u0v:B (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    801540 8u0v:C (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    801541 8u0v:C (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    801542 8u0v:C (3.89) BS03 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    801543 8u0v:D (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    801544 8u0v:D (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    801545 8u0v:D (3.89) BS03 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    801546 8u0v:E (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    801547 8u0v:E (3.89) BS02 ATP 3.6.4.- GO:0005515 ... P24004 38036174
    801548 8u0v:F (3.89) BS01 ATP 3.6.4.- GO:0005515 ... P33760 38036174
    801549 8u0z:A (1.399) BS01 N 2.4.2.10
    4.1.1.23    		 GO:0004590 ... A0A6P6VUE3 38184030
    801550 8u0z:B (1.399) BS01 N 2.4.2.10
    4.1.1.23    		 GO:0004590 ... A0A6P6VUE3 38184030
    801551 8u13:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    801552 8u13:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    801553 8u13:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    801554 8u13:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    801555 8u13:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    801556 8u13:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    801557 8u13:D (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    801558 8u13:D (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    801559 8u13:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    801560 8u13:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    801561 8u13:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    801562 8u13:F (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    801563 8u13:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    801564 8u13:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    801565 8u13:H (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    801566 8u13:H (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    801567 8u14:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    801568 8u14:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    801569 8u14:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    801570 8u14:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    801571 8u14:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    801572 8u14:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    801573 8u14:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    801574 8u14:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    801575 8u14:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    801576 8u14:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    801577 8u14:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    801578 8u14:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    801579 8u14:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    801580 8u14:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    801581 8u14:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    801582 8u14:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    801583 8u1f:A (3.33) BS01 UIM 2.7.10.1 GO:0004672 ... P21802 38300868
    801584 8u1f:B (3.33) BS01 UIM 2.7.10.1 GO:0004672 ... P21802 38300868
    801585 8u1l:A (3.7) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    801586 8u1l:A (3.7) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    801587 8u1l:B (3.7) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    801588 8u1l:B (3.7) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    801589 8u1m:A (3.5) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    801590 8u1m:A (3.5) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    801591 8u1m:B (3.5) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    801592 8u1m:B (3.5) BS02 MG ? GO:0005524 ... A0A7E5VSK5 38431713
    801593 8u1n:A (3.9) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    801594 8u1n:B (3.9) BS01 ATP ? GO:0005524 ... A0A7E5VSK5 38431713
    801595 8u1w:A (1.84) BS01 FHR 3.4.22.66
    3.6.1.15    		 GO:0004197 ... K4L8Z7 38005879
    801596 8u1w:A (1.84) BS02 FHR 3.4.22.66
    3.6.1.15    		 GO:0004197 ... K4L8Z7 38005879
    801597 8u1x:C (2.7) BS01 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    801598 8u1x:C (2.7) BS02 MN 3.1.3.16 GO:0000159 ... P67775 38150499
    801599 8u26:R (2.5) BS01 peptide ? GO:0002118 ... P25103 37973972
    801600 8u27:A (-1.00) BS01 ULL ? GO:0042981 ... P10415
    Q07817    		 37875561
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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