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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    801201 8tvs:A (4.4) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801202 8tvs:A (4.4) BS05 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801203 8tvs:A (4.4) BS06 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    801204 8tvs:B (4.4) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    801205 8tvs:B (4.4) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    801206 8tvs:B (4.4) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    801207 8tvs:B (4.4) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    801208 8tvs:C (4.4) BS01 ZN ? GO:0000428 ... P16370 38194460
    801209 8tvs:I (4.4) BS01 ZN ? GO:0000428 ... P27999 38194460
    801210 8tvs:I (4.4) BS02 ZN ? GO:0000428 ... P27999 38194460
    801211 8tvs:J (4.4) BS01 ZN ? GO:0000428 ... P22139 38194460
    801212 8tvs:L (4.4) BS01 ZN ? GO:0000428 ... P40422 38194460
    801213 8tvv:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    801214 8tvv:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    801215 8tvv:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801216 8tvv:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801217 8tvv:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    801218 8tvv:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    801219 8tvv:B (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    801220 8tvv:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    801221 8tvv:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    801222 8tvv:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    801223 8tvv:I (3.7) BS02 ZN ? GO:0000428 ... P27999 38194460
    801224 8tvv:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    801225 8tvv:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    801226 8tvw:A (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    801227 8tvw:A (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    801228 8tvw:A (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801229 8tvw:A (3.6) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801230 8tvw:A (3.6) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    801231 8tvw:B (3.6) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    801232 8tvw:B (3.6) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    801233 8tvw:B (3.6) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    801234 8tvw:C (3.6) BS01 ZN ? GO:0000428 ... P16370 38194460
    801235 8tvw:E (3.6) BS01 dna ? GO:0000428 ... P20434 38194460
    801236 8tvw:I (3.6) BS01 ZN ? GO:0000428 ... P27999 38194460
    801237 8tvw:I (3.6) BS02 ZN ? GO:0000428 ... P27999 38194460
    801238 8tvw:J (3.6) BS01 ZN ? GO:0000428 ... P22139 38194460
    801239 8tvw:L (3.6) BS01 ZN ? GO:0000428 ... P40422 38194460
    801240 8tvx:A (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    801241 8tvx:A (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    801242 8tvx:A (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801243 8tvx:A (3.7) BS04 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801244 8tvx:A (3.7) BS05 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    801245 8tvx:B (3.7) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    801246 8tvx:B (3.7) BS02 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    801247 8tvx:B (3.7) BS03 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    801248 8tvx:C (3.7) BS01 ZN ? GO:0000428 ... P16370 38194460
    801249 8tvx:E (3.7) BS01 dna ? GO:0000428 ... P20434 38194460
    801250 8tvx:I (3.7) BS01 ZN ? GO:0000428 ... P27999 38194460
    801251 8tvx:J (3.7) BS01 ZN ? GO:0000428 ... P22139 38194460
    801252 8tvx:L (3.7) BS01 ZN ? GO:0000428 ... P40422 38194460
    801253 8tvy:A (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P04050 38194460
    801254 8tvy:A (3.1) BS02 rna 2.7.7.6 GO:0000428 ... P04050 38194460
    801255 8tvy:A (3.1) BS03 ZN 2.7.7.6 GO:0000428 ... P04050 38194460
    801256 8tvy:A (3.1) BS04 MG 2.7.7.6 GO:0000428 ... P04050 38194460
    801257 8tvy:B (3.1) BS01 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    801258 8tvy:B (3.1) BS02 dna 2.7.7.6 GO:0000428 ... P08518 38194460
    801259 8tvy:B (3.1) BS03 rna 2.7.7.6 GO:0000428 ... P08518 38194460
    801260 8tvy:B (3.1) BS04 ZN 2.7.7.6 GO:0000428 ... P08518 38194460
    801261 8tvy:C (3.1) BS01 ZN ? GO:0000428 ... P16370 38194460
    801262 8tvy:E (3.1) BS01 dna ? GO:0000428 ... P20434 38194460
    801263 8tvy:I (3.1) BS01 ZN ? GO:0000428 ... P27999 38194460
    801264 8tvy:I (3.1) BS02 ZN ? GO:0000428 ... P27999 38194460
    801265 8tvy:M (3.1) BS01 dna 3.6.4.12 GO:0000785 ... P40352 38194460
    801266 8tvy:M (3.1) BS02 dna 3.6.4.12 GO:0000785 ... P40352 38194460
    801267 8twe:A (2.55) BS01 peptide ? GO:0000159 ... P30153 38123684
    801268 8twe:B (2.55) BS01 peptide ? GO:0000159 ... P63151 38123684
    801269 8twe:B (2.55) BS02 peptide ? GO:0000159 ... P63151 38123684
    801270 8twf:A (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    801271 8twf:B (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    801272 8twf:C (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    801273 8twf:D (2.4) BS01 FAD N/A GO:0004497 ... A0A078L5T0 38493211
    801274 8twg:B (1.8) BS01 FAD N/A GO:0004497 ... A0A222NYA8 38493211
    801275 8twi:C (2.69) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 38123684
    801276 8twi:C (2.69) BS02 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    801277 8twi:C (2.69) BS03 ZN 3.1.3.16 GO:0000159 ... P67775 38123684
    801278 8twj:A (1.9) BS01 UDP ? GO:0005576 ... P13835 38354245
    801279 8two:A (2.09) BS01 peptide ? GO:0005576 ... P13835 38354245
    801280 8two:A (2.09) BS02 UDP ? GO:0005576 ... P13835 38354245
    801281 8two:A (2.09) BS03 RAM ? GO:0005576 ... P13835 38354245
    801282 8tws:A (2.85) BS01 peptide ? GO:0005576 ... P13835 38354245
    801283 8tws:A (2.85) BS02 AWU ? GO:0005576 ... P13835 38354245
    801284 8twu:A (1.84) BS01 HEM ? GO:0004497 ... A0A9X9ZA09 37611404
    801285 8twu:A (1.84) BS02 RQB ? GO:0004497 ... A0A9X9ZA09 37611404
    801286 8twu:A (1.84) BS03 RQB ? GO:0004497 ... A0A9X9ZA09 37611404
    801287 8twu:A (1.84) BS04 ZN ? GO:0004497 ... A0A9X9ZA09 37611404
    801288 8twv:A (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801289 8twv:B (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801290 8twv:C (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801291 8twv:D (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801292 8twv:E (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801293 8twz:A (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801294 8twz:B (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801295 8twz:C (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801296 8twz:D (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801297 8twz:E (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    801298 8tx5:A (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    801299 8tx5:B (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    801300 8tx5:C (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    801301 8tx5:D (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    801302 8tx6:A (1.56) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    801303 8tx6:A (1.56) BS02 CA N/A GO:0005576 ... P0CS93 N/A
    801304 8txe:A (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    801305 8txe:A (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    801306 8txe:B (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    801307 8txe:B (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    801308 8txf:A (1.29) BS01 peptide ? GO:0005576 ... P13835 38354245
    801309 8txg:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    801310 8txg:A (1.5) BS02 VQT 3.6.5.2 GO:0003924 ... P01116 37849557
    801311 8txh:A (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    801312 8txh:A (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    801313 8txh:B (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    801314 8txh:B (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    801315 8txn:A (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    801316 8txn:A (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    801317 8txn:D (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    801318 8txn:D (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5    		 37890775
    801319 8txo:I (3.1) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    801320 8txo:I (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    801321 8txo:I (3.1) BS03 S9F 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    801322 8txo:J (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    801323 8txo:J (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    801324 8txo:J (3.1) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    801325 8txo:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    801326 8txo:J (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    801327 8txo:J (3.1) BS06 S9F 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    801328 8txv:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    801329 8txv:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    801330 8txv:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    801331 8txv:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    801332 8txv:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    801333 8txv:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    801334 8txv:D (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    801335 8txv:D (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    801336 8txv:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    801337 8txv:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    801338 8txv:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    801339 8txv:F (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    801340 8txv:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    801341 8txv:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    801342 8txv:G (3.8) BS03 peptide ? GO:0000786 ... P04908 38242129
    801343 8txv:H (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    801344 8txv:H (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    801345 8txv:H (3.8) BS03 peptide ? GO:0000786 ... P62807 38242129
    801346 8txw:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    801347 8txw:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    801348 8txw:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    801349 8txw:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    801350 8txw:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    801351 8txw:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    801352 8txw:D (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    801353 8txw:D (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    801354 8txw:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    801355 8txw:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    801356 8txw:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    801357 8txw:F (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    801358 8txw:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    801359 8txw:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    801360 8txw:G (3.6) BS03 peptide ? GO:0000786 ... P04908 38242129
    801361 8txw:H (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    801362 8txw:H (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    801363 8txw:H (3.6) BS03 peptide ? GO:0000786 ... P62807 38242129
    801364 8txx:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    801365 8txx:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    801366 8txx:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    801367 8txx:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    801368 8txx:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    801369 8txx:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    801370 8txx:D (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    801371 8txx:D (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    801372 8txx:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    801373 8txx:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    801374 8txx:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    801375 8txx:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    801376 8txx:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    801377 8txx:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    801378 8txx:H (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    801379 8txx:H (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    801380 8txx:K (3.7) BS01 dna 2.3.2.27 GO:0000151 ... Q8IYW5 38242129
    801381 8txy:A (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 38147543
    801382 8txy:B (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26    		 GO:0004672 ... Q7KZI7 38147543
    801383 8txz:A (3.05) BS01 A1N 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    801384 8txz:A (3.05) BS02 GDP 2.7.11.1
    3.6.5.-    		 GO:0004672 ... Q5S007 38039358
    801385 8tyj:A (1.9) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0004483 ... P0DTD1 N/A
    801386 8tyj:B (1.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    801387 8tyj:B (1.9) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0003723 ... P0DTD1 N/A
    801388 8typ:A (1.8) BS01 SQT 3.4.21.42 GO:0004252 ... P09871 38149922
    801389 8tyq:A (2.99) BS01 T3X 2.7.11.1
    3.6.5.-    		 GO:0000139 ... Q5S007 38039358
    801390 8tys:A (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    801391 8tys:C (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    801392 8tys:D (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    801393 8tys:F (2.9) BS01 CL ? GO:0005201 ... P08120 37890775
    801394 8tz1:A (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    801395 8tz1:A (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    801396 8tz1:A (2.54) BS03 LBN ? GO:0005337 ... F1MGR1 38418906
    801397 8tz1:A (2.54) BS04 LBN ? GO:0005337 ... F1MGR1 38418906
    801398 8tz1:A (2.54) BS05 LBN ? GO:0005337 ... F1MGR1 38418906
    801399 8tz1:B (2.54) BS01 RBV ? GO:0005337 ... F1MGR1 38418906
    801400 8tz1:B (2.54) BS02 LBN ? GO:0005337 ... F1MGR1 38418906
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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