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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800401 8tkn:A (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    800402 8tkn:B (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    800403 8tkn:B (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    800404 8tkp:B (2.9) BS01 CA ? GO:0000287 ... Q93640 38354260
    800405 8tkp:B (2.9) BS02 CA ? GO:0000287 ... Q93640 38354260
    800406 8tkp:D (2.9) BS01 CLR ? GO:0005886 ... Q11069 38354260
    800407 8tkp:E (2.9) BS01 CA ? GO:0000287 ... Q93640 38354260
    800408 8tkp:E (2.9) BS02 CA ? GO:0000287 ... Q93640 38354260
    800409 8tkz:B (2.06) BS01 CO N/A GO:0004427 ... O94725 N/A
    800410 8tkz:B (2.06) BS02 ZN N/A GO:0004427 ... O94725 N/A
    800411 8tkz:B (2.06) BS03 ZN N/A GO:0004427 ... O94725 N/A
    800412 8tl1:A (3.16) BS01 GCH ? GO:0001172 ... P03526 38503747
    800413 8tl6:A (2.63) BS01 peptide ? GO:0003676 ... Q16531 38538798
    800414 8tl6:B (2.63) BS01 peptide ? GO:0005515 ... Q96JK2 38538798
    800415 8tl8:A (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    800416 8tl8:A (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    800417 8tl8:B (3.2) BS01 GCH ? GO:0001172 ... P03526 38503747
    800418 8tl8:B (3.2) BS02 GCH ? GO:0001172 ... P03526 38503747
    800419 8tl9:A (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800420 8tl9:A (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800421 8tl9:A (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    800422 8tl9:A (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800423 8tl9:B (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800424 8tl9:B (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800425 8tl9:B (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    800426 8tl9:B (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800427 8tl9:C (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800428 8tl9:C (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800429 8tl9:C (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    800430 8tl9:C (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800431 8tl9:D (3.3) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800432 8tl9:D (3.3) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800433 8tl9:D (3.3) BS03 CA ? GO:0000822 ... Q14573 37898605
    800434 8tl9:D (3.3) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800435 8tla:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800436 8tla:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800437 8tla:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    800438 8tla:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800439 8tla:B (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800440 8tla:B (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800441 8tla:B (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    800442 8tla:B (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800443 8tla:C (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800444 8tla:C (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800445 8tla:C (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    800446 8tla:C (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800447 8tla:D (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800448 8tla:D (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800449 8tla:D (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    800450 8tla:D (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800451 8tlc:A (2.72) BS01 I6I 2.1.2.1 GO:0002082 ... P34897 38324671
    800452 8tlc:B (2.72) BS01 I6I 2.1.2.1 GO:0002082 ... P34897 38324671
    800453 8tli:A (2.2) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 10651278
    800454 8tli:A (2.2) BS02 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    800455 8tli:A (2.2) BS03 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    800456 8tli:A (2.2) BS04 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    800457 8tli:A (2.2) BS05 CA 3.4.24.27 GO:0004222 ... P00800 10651278
    800458 8tln:E (1.6) BS01 VAL 3.4.24.27 GO:0004222 ... P00800 1445869
    800459 8tln:E (1.6) BS02 LYS 3.4.24.27 GO:0004222 ... P00800 1445869
    800460 8tln:E (1.6) BS03 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    800461 8tln:E (1.6) BS04 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    800462 8tln:E (1.6) BS05 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    800463 8tln:E (1.6) BS06 CA 3.4.24.27 GO:0004222 ... P00800 1445869
    800464 8tln:E (1.6) BS07 ZN 3.4.24.27 GO:0004222 ... P00800 1445869
    800465 8tlq:A (3.53) BS01 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    800466 8tlq:A (3.53) BS02 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    800467 8tlq:A (3.53) BS03 CA 2.7.7.7 GO:0000166 ... P14284 38720088
    800468 8tlq:A (3.53) BS04 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    800469 8tlq:A (3.53) BS05 SF4 2.7.7.7 GO:0000166 ... P14284 38720088
    800470 8tlq:B (3.53) BS01 dna 2.7.7.- GO:0000785 ... P12689 38720088
    800471 8tlq:B (3.53) BS02 dna 2.7.7.- GO:0000785 ... P12689 38720088
    800472 8tls:A (1.7) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    800473 8tls:B (1.7) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    800474 8tlt:A (2.85) BS01 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    800475 8tlt:A (2.85) BS02 dna 2.7.7.7 GO:0000166 ... P14284 38720088
    800476 8tlt:A (2.85) BS03 SF4 2.7.7.7 GO:0000166 ... P14284 38720088
    800477 8tlt:A (2.85) BS04 CA 2.7.7.7 GO:0000166 ... P14284 38720088
    800478 8tlt:A (2.85) BS05 DCP 2.7.7.7 GO:0000166 ... P14284 38720088
    800479 8tlv:A (2.659) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800480 8tlv:A (2.659) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800481 8tlv:A (2.659) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800482 8tlw:A (2.106) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800483 8tlw:A (2.106) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800484 8tlw:A (2.106) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800485 8tlx:A (2.097) BS01 peptide ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800486 8tlx:A (2.097) BS02 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800487 8tlx:A (2.097) BS03 GLC ? GO:0005515 ... P0AEX9
    P42568    		 38747396
    800488 8tm7:A (1.79) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    800489 8tm7:A (1.79) BS02 I7Q 2.4.2.12 GO:0005125 ... P43490 38352833
    800490 8tm7:A (1.79) BS03 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    800491 8tm7:B (1.79) BS01 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    800492 8tm7:B (1.79) BS02 NCA 2.4.2.12 GO:0005125 ... P43490 38352833
    800493 8tm7:B (1.79) BS03 I7Q 2.4.2.12 GO:0005125 ... P43490 38352833
    800494 8tmr:A (1.37) BS01 NXL 3.5.2.6 GO:0008800 ... A0A4Y5JTU1 38000656
    800495 8tmt:A (1.7) BS01 4D6 3.5.2.6 GO:0008800 ... A0A4Y5JTU1 38000656
    800496 8tn3:A (1.63) BS01 PMP ? GO:0008483 ... Q643B9 37890134
    800497 8tn3:B (1.63) BS01 PMP ? GO:0008483 ... Q643B9 37890134
    800498 8tnk:A (1.79) BS01 IRJ ? GO:0004497 ... Q2IU02 37837941
    800499 8tnk:A (1.79) BS02 HEM ? GO:0004497 ... Q2IU02 37837941
    800500 8tnp:B (3.3) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    800501 8tnp:B (3.3) BS02 Y70 ? GO:0005515 ... Q96SW2 38484051
    800502 8tnp:C (3.3) BS01 Y70 ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    800503 8tnp:C (3.3) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    800504 8tnq:B (2.41) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    800505 8tnq:B (2.41) BS02 MIQ ? GO:0005515 ... Q96SW2 38484051
    800506 8tnq:C (2.41) BS01 MIQ ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    800507 8tnq:C (2.41) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    800508 8tnr:B (2.5) BS01 ZN ? GO:0005515 ... Q96SW2 38484051
    800509 8tnr:B (2.5) BS02 MIQ ? GO:0005515 ... Q96SW2 38484051
    800510 8tnr:C (2.5) BS01 MIQ ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    800511 8tnr:C (2.5) BS02 ZN ? GO:0005515 ... P0AEX9
    Q13422    		 38484051
    800512 8tnv:A (1.5) BS01 CUO N/A GO:0016491 ... N/A 38513659
    800513 8tnv:B (1.5) BS01 CUO N/A GO:0016491 ... N/A 38513659
    800514 8tny:A (3.55) BS01 SO4 ? GO:0001503 ... P50443 38684689
    800515 8tny:B (3.55) BS01 SO4 ? GO:0001503 ... P50443 38684689
    800516 8to1:I (2.8) BS01 4QM N/A GO:0000345 ... P0A8V2 38951624
    800517 8to1:I (2.8) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    800518 8to1:J (2.8) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    800519 8to1:J (2.8) BS02 MG N/A GO:0000287 ... P0A8T7 38951624
    800520 8to1:J (2.8) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    800521 8to1:J (2.8) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    800522 8to1:L (2.8) BS01 dna N/A GO:0000345 ... P00579 38951624
    800523 8to1:L (2.8) BS02 dna N/A GO:0000345 ... P00579 38951624
    800524 8to2:B (2.0) BS01 45D ? GO:0005515 ... P74102 38578996
    800525 8to6:I (2.9) BS01 dna N/A GO:0000345 ... P0A8V2 38951624
    800526 8to6:I (2.9) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    800527 8to6:J (2.9) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    800528 8to6:J (2.9) BS02 dna N/A GO:0000287 ... P0A8T7 38951624
    800529 8to6:J (2.9) BS03 MG N/A GO:0000287 ... P0A8T7 38951624
    800530 8to6:J (2.9) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    800531 8to6:J (2.9) BS05 ZN N/A GO:0000287 ... P0A8T7 38951624
    800532 8to6:L (2.9) BS01 dna N/A GO:0000345 ... P00579 38951624
    800533 8to6:L (2.9) BS02 dna N/A GO:0000345 ... P00579 38951624
    800534 8to8:I (2.9) BS01 4QM N/A GO:0000345 ... P0A8V2 38951624
    800535 8to8:I (2.9) BS02 4QM N/A GO:0000345 ... P0A8V2 38951624
    800536 8to8:J (2.9) BS01 dna N/A GO:0000287 ... P0A8T7 38951624
    800537 8to8:J (2.9) BS02 MG N/A GO:0000287 ... P0A8T7 38951624
    800538 8to8:J (2.9) BS03 ZN N/A GO:0000287 ... P0A8T7 38951624
    800539 8to8:J (2.9) BS04 ZN N/A GO:0000287 ... P0A8T7 38951624
    800540 8to8:L (2.9) BS01 dna N/A GO:0000345 ... P00579 38951624
    800541 8to8:L (2.9) BS02 dna N/A GO:0000345 ... P00579 38951624
    800542 8to8:L (2.9) BS03 4QM N/A GO:0000345 ... P00579 38951624
    800543 8toc:AB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800544 8toc:AF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800545 8toc:AG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800546 8toc:AI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800547 8toc:AN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800548 8toc:AO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800549 8toc:AQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800550 8toc:AT (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800551 8toc:AU (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800552 8toc:AV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800553 8toc:AZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800554 8toc:BF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800555 8toc:BK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800556 8toc:BO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800557 8toc:BP (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800558 8toc:BS (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800559 8toc:BX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800560 8toc:BZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800561 8toc:Bc (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800562 8toc:CA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800563 8toc:CB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800564 8toc:CC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800565 8toc:CG (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800566 8toc:CK (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800567 8toc:CN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800568 8toc:CO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800569 8toc:CQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800570 8toc:CX (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800571 8toc:DA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800572 8toc:DF (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800573 8toc:DH (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800574 8toc:DI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800575 8toc:DJ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800576 8toc:DN (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800577 8toc:DO (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800578 8toc:DS (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800579 8toc:DT (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800580 8toc:DW (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800581 8toc:DY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800582 8toc:DZ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800583 8toc:EA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800584 8toc:EB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800585 8toc:EC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800586 8toc:ED (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800587 8toc:EE (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800588 8toc:EH (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800589 8toc:EI (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800590 8toc:EM (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800591 8toc:EQ (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800592 8toc:ES (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800593 8toc:EU (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800594 8toc:EV (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800595 8toc:EW (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800596 8toc:EY (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800597 8toc:Ec (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800598 8toc:FA (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800599 8toc:FB (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    800600 8toc:FC (3.11) BS01 rna ? GO:0019028 ... Q9AZ42 38553443
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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