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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800201 8tiq:C (2.45) BS03 MG ? GO:0003677 ... P03856 N/A
    800202 8tir:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    800203 8tir:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    800204 8tir:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    800205 8tis:C (2.54) BS01 dna ? GO:0003677 ... P03856 N/A
    800206 8tis:C (2.54) BS02 dna ? GO:0003677 ... P03856 N/A
    800207 8tis:C (2.54) BS03 MG ? GO:0003677 ... P03856 N/A
    800208 8tit:C (2.84) BS01 dna ? GO:0003677 ... P03856 N/A
    800209 8tit:C (2.84) BS02 dna ? GO:0003677 ... P03856 N/A
    800210 8tit:C (2.84) BS03 MG ? GO:0003677 ... P03856 N/A
    800211 8tiu:C (3.9) BS01 dna ? GO:0003677 ... P03856 N/A
    800212 8tiu:C (3.9) BS02 dna ? GO:0003677 ... P03856 N/A
    800213 8tiu:C (3.9) BS03 MG ? GO:0003677 ... P03856 N/A
    800214 8tiv:C (3.35) BS01 dna ? GO:0003677 ... P03856 N/A
    800215 8tiv:C (3.35) BS02 dna ? GO:0003677 ... P03856 N/A
    800216 8tiv:C (3.35) BS03 MG ? GO:0003677 ... P03856 N/A
    800217 8tiw:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    800218 8tiw:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    800219 8tiw:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    800220 8tix:C (2.91) BS01 dna ? GO:0003677 ... P03856 N/A
    800221 8tix:C (2.91) BS02 dna ? GO:0003677 ... P03856 N/A
    800222 8tix:C (2.91) BS03 MG ? GO:0003677 ... P03856 N/A
    800223 8tiy:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    800224 8tiy:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    800225 8tiy:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    800226 8tiz:C (3.11) BS01 dna ? GO:0003677 ... P03856 N/A
    800227 8tiz:C (3.11) BS02 dna ? GO:0003677 ... P03856 N/A
    800228 8tiz:C (3.11) BS03 MG ? GO:0003677 ... P03856 N/A
    800229 8tj0:C (3.24) BS01 dna ? GO:0003677 ... P03856 N/A
    800230 8tj0:C (3.24) BS02 dna ? GO:0003677 ... P03856 N/A
    800231 8tj0:C (3.24) BS03 MG ? GO:0003677 ... P03856 N/A
    800232 8tj1:C (3.15) BS01 dna ? GO:0003677 ... P03856 N/A
    800233 8tj1:C (3.15) BS02 dna ? GO:0003677 ... P03856 N/A
    800234 8tj1:C (3.15) BS03 MG ? GO:0003677 ... P03856 N/A
    800235 8tj4:A (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    800236 8tj4:C (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    800237 8tj4:E (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    800238 8tj4:G (1.95) BS01 SIA ? GO:0019031 ... P03441 38307019
    800239 8tj5:0 (6.6) BS01 peptide ? GO:0000972 ... P38181 37738963
    800240 8tj5:E (6.6) BS01 peptide ? GO:0005515 ... P48837 37738963
    800241 8tj5:E (6.6) BS02 peptide ? GO:0005515 ... P48837 37738963
    800242 8tj5:E (6.6) BS03 peptide ? GO:0005515 ... P48837 37738963
    800243 8tj5:F (6.6) BS01 peptide ? GO:0000055 ... Q02199 37738963
    800244 8tj5:K (6.6) BS01 peptide ? GO:0005515 ... P48837 37738963
    800245 8tj5:K (6.6) BS02 peptide ? GO:0005515 ... P48837 37738963
    800246 8tj5:K (6.6) BS03 peptide ? GO:0005515 ... P48837 37738963
    800247 8tj5:L (6.6) BS01 peptide ? GO:0000055 ... Q02199 37738963
    800248 8tj5:M (6.6) BS01 peptide ? GO:0005515 ... P47054 37738963
    800249 8tj5:N (6.6) BS01 peptide ? GO:0005634 ... P52593 37738963
    800250 8tj5:O (6.6) BS01 peptide ? GO:0005515 ... P47054 37738963
    800251 8tj5:P (6.6) BS01 peptide ? GO:0005634 ... P52593 37738963
    800252 8tj5:R (6.6) BS01 peptide ? GO:0000055 ... P34077 37738963
    800253 8tj5:T (6.6) BS01 peptide ? GO:0000055 ... P34077 37738963
    800254 8tj5:Y (6.6) BS01 peptide ? GO:0000972 ... P38181 37738963
    800255 8tj6:A (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    800256 8tj6:B (2.85) BS01 FUC ? GO:0019031 ... O11283 38307019
    800257 8tj6:C (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    800258 8tj6:E (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    800259 8tj6:G (2.85) BS01 SIA ? GO:0019031 ... O11283 38307019
    800260 8tj7:A (2.85) BS01 SIA ? GO:0019031 ... H9XM74 38307019
    800261 8tj8:A (2.56) BS01 SIA ? GO:0019031 ... I6SI59 38307019
    800262 8tj9:A (1.9) BS01 SIA ? GO:0019031 ... A0A0Y0S9M3 38307019
    800263 8tja:A (2.05) BS01 SIA ? GO:0019031 ... A0A4P8J8E1 38307019
    800264 8tjb:A (2.45) BS01 SIA ? GO:0019031 ... A0A1W6AW68 38307019
    800265 8tjc:A (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800266 8tjc:A (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800267 8tjc:B (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800268 8tjc:B (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800269 8tjc:C (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800270 8tjc:C (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800271 8tjc:D (2.2) BS01 MN 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800272 8tjc:D (2.2) BS02 HI8 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800273 8tje:A (3.4) BS01 dna ? GO:0005198 ... A0AA49KFS3 N/A
    800274 8tje:A (3.4) BS02 dna ? GO:0005198 ... A0AA49KFS3 N/A
    800275 8tjg:A (1.45) BS01 ZN 4.2.99.18 GO:0000703 ... A0QT90 N/A
    800276 8tjj:A (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    800277 8tjj:B (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    800278 8tjj:C (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    800279 8tjj:D (1.82) BS01 SAM ? GO:0008168 ... A0A0F7G196 38042494
    800280 8tjk:A (1.85) BS01 SAH ? GO:0008168 ... A0A0F7G196 38042494
    800281 8tjk:B (1.85) BS01 SAH ? GO:0008168 ... A0A0F7G196 38042494
    800282 8tjl:A (2.7) BS01 HZ6 2.7.10.1 GO:0004672 ... P00533 38300264
    800283 8tk7:A (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    800284 8tk7:B (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    800285 8tk7:C (2.53) BS01 peptide ? GO:0006826 ... Q1D6H4 37657675
    800286 8tk8:A (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800287 8tk8:A (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800288 8tk8:A (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800289 8tk8:B (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800290 8tk8:B (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800291 8tk8:B (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800292 8tk8:C (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800293 8tk8:C (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800294 8tk8:C (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800295 8tk8:D (2.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800296 8tk8:D (2.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800297 8tk8:D (2.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800298 8tkb:A (1.71) BS01 AMP N/A GO:0000215 ... O57899 N/A
    800299 8tkb:A (1.71) BS02 AMP N/A GO:0000215 ... O57899 N/A
    800300 8tkd:A (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800301 8tkd:A (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800302 8tkd:A (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800303 8tkd:B (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800304 8tkd:B (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800305 8tkd:B (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800306 8tkd:C (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800307 8tkd:C (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800308 8tkd:C (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800309 8tkd:D (3.7) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800310 8tkd:D (3.7) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800311 8tkd:D (3.7) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800312 8tke:A (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800313 8tke:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800314 8tke:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800315 8tke:B (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800316 8tke:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800317 8tke:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800318 8tke:C (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800319 8tke:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800320 8tke:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800321 8tke:D (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800322 8tke:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800323 8tke:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800324 8tkf:A (3.2) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800325 8tkf:A (3.2) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800326 8tkf:A (3.2) BS03 CA ? GO:0000822 ... Q14573 37898605
    800327 8tkf:A (3.2) BS04 ATP ? GO:0000822 ... Q14573 37898605
    800328 8tkf:A (3.2) BS05 PT5 ? GO:0000822 ... Q14573 37898605
    800329 8tkf:A (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    800330 8tkf:B (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    800331 8tkf:B (3.2) BS02 ZN ? GO:0000822 ... Q14573 37898605
    800332 8tkf:B (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    800333 8tkf:B (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    800334 8tkf:B (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    800335 8tkf:B (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    800336 8tkf:C (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    800337 8tkf:C (3.2) BS02 ZN ? GO:0000822 ... Q14573 37898605
    800338 8tkf:C (3.2) BS03 I3P ? GO:0000822 ... Q14573 37898605
    800339 8tkf:C (3.2) BS04 CA ? GO:0000822 ... Q14573 37898605
    800340 8tkf:C (3.2) BS05 ATP ? GO:0000822 ... Q14573 37898605
    800341 8tkf:C (3.2) BS06 PT5 ? GO:0000822 ... Q14573 37898605
    800342 8tkf:D (3.2) BS01 PT5 ? GO:0000822 ... Q14573 37898605
    800343 8tkf:D (3.2) BS02 PT5 ? GO:0000822 ... Q14573 37898605
    800344 8tkf:D (3.2) BS03 ZN ? GO:0000822 ... Q14573 37898605
    800345 8tkf:D (3.2) BS04 I3P ? GO:0000822 ... Q14573 37898605
    800346 8tkf:D (3.2) BS05 CA ? GO:0000822 ... Q14573 37898605
    800347 8tkf:D (3.2) BS06 ATP ? GO:0000822 ... Q14573 37898605
    800348 8tkg:A (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800349 8tkg:A (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800350 8tkg:A (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    800351 8tkg:A (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    800352 8tkg:A (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    800353 8tkg:B (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800354 8tkg:B (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800355 8tkg:B (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    800356 8tkg:B (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    800357 8tkg:B (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    800358 8tkg:C (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800359 8tkg:C (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800360 8tkg:C (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    800361 8tkg:C (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    800362 8tkg:C (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    800363 8tkg:D (2.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800364 8tkg:D (2.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800365 8tkg:D (2.5) BS03 CA ? GO:0000822 ... Q14573 37898605
    800366 8tkg:D (2.5) BS04 CA ? GO:0000822 ... Q14573 37898605
    800367 8tkg:D (2.5) BS05 ATP ? GO:0000822 ... Q14573 37898605
    800368 8tkh:A (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800369 8tkh:A (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800370 8tkh:A (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800371 8tkh:B (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800372 8tkh:B (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800373 8tkh:B (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800374 8tkh:C (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800375 8tkh:C (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800376 8tkh:C (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800377 8tkh:D (3.5) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800378 8tkh:D (3.5) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800379 8tkh:D (3.5) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800380 8tki:A (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800381 8tki:A (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800382 8tki:A (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800383 8tki:B (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800384 8tki:B (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800385 8tki:B (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800386 8tki:C (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800387 8tki:C (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800388 8tki:C (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800389 8tki:D (3.6) BS01 ZN ? GO:0000822 ... Q14573 37898605
    800390 8tki:D (3.6) BS02 I3P ? GO:0000822 ... Q14573 37898605
    800391 8tki:D (3.6) BS03 ATP ? GO:0000822 ... Q14573 37898605
    800392 8tkl:A (3.0) BS01 dna ? GO:0003677 ... P25799 37759710
    800393 8tkl:A (3.0) BS02 dna ? GO:0003677 ... P25799 37759710
    800394 8tkl:B (3.0) BS01 dna ? GO:0003677 ... P25799 37759710
    800395 8tkl:B (3.0) BS02 dna ? GO:0003677 ... P25799 37759710
    800396 8tkm:A (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    800397 8tkm:A (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    800398 8tkm:B (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    800399 8tkm:B (2.8) BS02 dna ? GO:0003677 ... P25799 37759710
    800400 8tkn:A (2.8) BS01 dna ? GO:0003677 ... P25799 37759710
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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