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BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    800001 8tfw:A (1.93) BS02 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    800002 8tfw:B (1.93) BS01 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    800003 8tfw:B (1.93) BS02 ZKR N/A GO:0016787 ... Q2FDS6 N/A
    800004 8tfx:A (1.7) BS01 A2P 2.7.1.- GO:0000215 ... O57899 37883434
    800005 8tfy:A (1.54) BS01 NAP 2.7.1.- GO:0000215 ... O57899 37883434
    800006 8tfz:A (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    800007 8tfz:B (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    800008 8tg3:A (1.47) BS01 HQG 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    800009 8tg4:A (1.37) BS01 rna 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    800010 8tg4:A (1.37) BS02 9SO 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    800011 8tg5:A (2.0) BS01 9S2 2.7.1.- GO:0000215 ... O57899 37883434
    800012 8tgb:A (1.55) BS01 HEM ? GO:0020037 ... Q84YL2 38041394
    800013 8tgb:B (1.55) BS01 HEM ? GO:0020037 ... Q84YL2 38041394
    800014 8tgd:A (2.928) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 37623743
    800015 8tgd:A (2.928) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 37623743
    800016 8tgd:C (2.928) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 37623743
    800017 8tgd:C (2.928) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001525 ... P42336 37623743
    800018 8tgf:A (1.6) BS01 peptide N/A GO:0000045 ... Q09490 N/A
    800019 8tgg:A (3.6) BS01 WRF ? GO:0005335 ... P54219 38499039
    800020 8tgg:B (3.6) BS01 YHR ? GO:0005335 ... P54219 38499039
    800021 8tgh:A (3.5) BS01 1WE ? GO:0005335 ... P54219 38499039
    800022 8tgh:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    800023 8tgi:A (3.4) BS01 LDP ? GO:0005335 ... P54219 38499039
    800024 8tgi:B (3.4) BS01 YHR ? GO:0005335 ... P54219 38499039
    800025 8tgj:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    800026 8tgk:A (3.7) BS01 HSM ? GO:0005335 ... P54219 38499039
    800027 8tgk:B (3.7) BS01 YHR ? GO:0005335 ... P54219 38499039
    800028 8tgl:B (3.4) BS01 YHR ? GO:0005335 ... P54219 38499039
    800029 8tgm:A (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    800030 8tgm:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    800031 8tgn:A (3.3) BS01 SRO ? GO:0005335 ... P54219 38499039
    800032 8tgn:B (3.3) BS01 YHR ? GO:0005335 ... P54219 38499039
    800033 8tgp:A (1.76) BS01 peptide 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 37966275
    800034 8tgp:A (1.76) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 37966275
    800035 8tgy:A (2.18) BS01 9U1 ? GO:0005886 ... U2EQ00 37645731
    800036 8tgy:E (2.18) BS01 9U1 ? GO:0005886 ... U2EQ00 37645731
    800037 8th3:A (3.0) BS01 Y01 ? GO:0042597 ... P0ABE7
    P30556
    38744986
    800038 8th3:A (3.0) BS02 Y01 ? GO:0042597 ... P0ABE7
    P30556
    38744986
    800039 8th4:A (3.3) BS01 LSN ? GO:0042597 ... P0ABE7
    P30556
    38744986
    800040 8th9:A (2.08) BS01 dna 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    800041 8th9:A (2.08) BS02 dna 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    800042 8th9:A (2.08) BS03 ZN 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    800043 8thb:A (3.2) BS01 AGS ? GO:0000724 ... Q12050 38427736
    800044 8thb:B (3.2) BS01 AGS ? GO:0000077 ... P40339 38427736
    800045 8thb:B (3.2) BS02 AGS ? GO:0000077 ... P40339 38427736
    800046 8thb:C (3.2) BS01 AGS ? GO:0000077 ... P38629 38427736
    800047 8thb:C (3.2) BS02 MG ? GO:0000077 ... P38629 38427736
    800048 8thb:D (3.2) BS01 AGS ? GO:0000076 ... P40348 38427736
    800049 8thb:D (3.2) BS02 MG ? GO:0000076 ... P40348 38427736
    800050 8thb:E (3.2) BS01 ADP ? GO:0000077 ... P38251 38427736
    800051 8thc:A (3.67) BS01 AGS ? GO:0000724 ... Q12050 38427736
    800052 8thc:B (3.67) BS01 AGS ? GO:0000077 ... P40339 38427736
    800053 8thc:B (3.67) BS02 AGS ? GO:0000077 ... P40339 38427736
    800054 8thc:C (3.67) BS01 AGS ? GO:0000077 ... P38629 38427736
    800055 8thc:D (3.67) BS01 AGS ? GO:0000076 ... P40348 38427736
    800056 8thc:E (3.67) BS01 ADP ? GO:0000077 ... P38251 38427736
    800057 8thd:A (3.25) BS01 AGS ? GO:0000724 ... Q12050 38427736
    800058 8thd:B (3.25) BS01 AGS ? GO:0000077 ... P40339 38427736
    800059 8thd:B (3.25) BS02 AGS ? GO:0000077 ... P40339 38427736
    800060 8thd:B (3.25) BS03 MG ? GO:0000077 ... P40339 38427736
    800061 8thd:C (3.25) BS01 AGS ? GO:0000077 ... P38629 38427736
    800062 8thd:D (3.25) BS01 AGS ? GO:0000076 ... P40348 38427736
    800063 8thd:E (3.25) BS01 ADP ? GO:0000077 ... P38251 38427736
    800064 8the:A (2.5) BS01 HEM ? GO:0009279 ... Q9HV88 38325368
    800065 8the:A (2.5) BS02 CTQ ? GO:0009279 ... Q9HV88 38325368
    800066 8thg:A (2.9) BS01 657 ? GO:0001518 ... Q15858 37782796
    800067 8thg:A (2.9) BS02 Y01 ? GO:0001518 ... Q15858 37782796
    800068 8thg:A (2.9) BS03 Y01 ? GO:0001518 ... Q15858 37782796
    800069 8thg:A (2.9) BS04 LPE ? GO:0001518 ... Q15858 37782796
    800070 8thg:A (2.9) BS05 LPE ? GO:0001518 ... Q15858 37782796
    800071 8thg:A (2.9) BS06 P5S ? GO:0001518 ... Q15858 37782796
    800072 8thg:A (2.9) BS07 LPE ? GO:0001518 ... Q15858 37782796
    800073 8thg:A (2.9) BS08 LPE ? GO:0001518 ... Q15858 37782796
    800074 8thh:A (2.7) BS01 IYJ ? GO:0001518 ... Q15858 37782796
    800075 8thh:A (2.7) BS02 IYJ ? GO:0001518 ... Q15858 37782796
    800076 8thh:A (2.7) BS03 Y01 ? GO:0001518 ... Q15858 37782796
    800077 8thh:A (2.7) BS04 Y01 ? GO:0001518 ... Q15858 37782796
    800078 8thh:A (2.7) BS05 Y01 ? GO:0001518 ... Q15858 37782796
    800079 8thh:A (2.7) BS06 LPE ? GO:0001518 ... Q15858 37782796
    800080 8thh:A (2.7) BS07 LPE ? GO:0001518 ... Q15858 37782796
    800081 8thh:A (2.7) BS08 P5S ? GO:0001518 ... Q15858 37782796
    800082 8thh:A (2.7) BS09 LPE ? GO:0001518 ... Q15858 37782796
    800083 8thh:A (2.7) BS10 LPE ? GO:0001518 ... Q15858 37782796
    800084 8thh:A (2.7) BS11 LPE ? GO:0001518 ... Q15858 37782796
    800085 8thh:A (2.7) BS12 LPE ? GO:0001518 ... Q15858 37782796
    800086 8thh:A (2.7) BS13 Y01 ? GO:0001518 ... Q15858 37782796
    800087 8thk:R (2.6) BS01 CGZ 3.2.1.17 GO:0003796 ... P00720
    P35348
    37563160
    800088 8thl:R (3.1) BS01 ALE 3.2.1.17 GO:0003796 ... P00720
    P35348
    37563160
    800089 8thn:C (2.9) BS01 TBA ? GO:0005249 ... P0A334 38042487
    800090 8thp:A (2.6) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    800091 8thp:A (2.6) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    800092 8thp:B (2.6) BS01 CA ? GO:0000160 ... A5FFU4 N/A
    800093 8thp:B (2.6) BS02 CA ? GO:0000160 ... A5FFU4 N/A
    800094 8thr:A (3.12) BS01 EBZ ? GO:0001975 ... Q05940 38517752
    800095 8thu:A (3.1) BS01 dna ? GO:0000786 ... P84233 N/A
    800096 8thu:A (3.1) BS02 dna ? GO:0000786 ... P84233 N/A
    800097 8thu:B (3.1) BS01 dna ? GO:0000786 ... P62799 N/A
    800098 8thu:B (3.1) BS02 dna ? GO:0000786 ... P62799 N/A
    800099 8thu:C (3.1) BS01 dna ? GO:0000786 ... P0C0S5 N/A
    800100 8thu:C (3.1) BS02 dna ? GO:0000786 ... P0C0S5 N/A
    800101 8thu:D (3.1) BS01 dna ? GO:0000786 ... P02281 N/A
    800102 8thu:D (3.1) BS02 dna ? GO:0000786 ... P02281 N/A
    800103 8thu:E (3.1) BS01 dna ? GO:0000786 ... P84233 N/A
    800104 8thu:E (3.1) BS02 dna ? GO:0000786 ... P84233 N/A
    800105 8thu:F (3.1) BS01 dna ? GO:0000786 ... P62799 N/A
    800106 8thu:G (3.1) BS01 dna ? GO:0000786 ... P0C0S5 N/A
    800107 8thu:G (3.1) BS02 dna ? GO:0000786 ... P0C0S5 N/A
    800108 8thu:H (3.1) BS01 dna ? GO:0000786 ... P02281 N/A
    800109 8thu:H (3.1) BS02 dna ? GO:0000786 ... P02281 N/A
    800110 8thx:A (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800111 8thx:B (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800112 8thx:C (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800113 8thx:D (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800114 8thx:E (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800115 8thy:A (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800116 8thy:A (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    800117 8thy:B (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800118 8thy:B (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    800119 8thy:C (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800120 8thy:C (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    800121 8thy:D (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800122 8thy:D (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    800123 8thy:E (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800124 8thy:E (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    800125 8ti0:A (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    800126 8ti0:B (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    800127 8ti0:C (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    800128 8ti0:D (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    800129 8ti0:E (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    800130 8ti0:F (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    800131 8ti0:G (3.77) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    800132 8ti1:A (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    800133 8ti1:A (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    800134 8ti1:B (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    800135 8ti1:B (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    800136 8ti1:C (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    800137 8ti1:C (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    800138 8ti1:D (2.9) BS01 PT5 ? GO:0001508 ... P70673 38509107
    800139 8ti1:D (2.9) BS02 PT5 ? GO:0001508 ... P70673 38509107
    800140 8ti1:E (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    800141 8ti1:E (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800142 8ti1:E (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800143 8ti1:F (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    800144 8ti1:F (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800145 8ti1:F (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800146 8ti1:G (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    800147 8ti1:G (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800148 8ti1:G (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800149 8ti1:H (2.9) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    800150 8ti1:H (2.9) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800151 8ti1:H (2.9) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800152 8ti2:A (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    800153 8ti2:A (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    800154 8ti2:B (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    800155 8ti2:B (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    800156 8ti2:C (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    800157 8ti2:C (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    800158 8ti2:D (3.28) BS01 PT5 ? GO:0001508 ... P70673 38509107
    800159 8ti2:D (3.28) BS02 PT5 ? GO:0001508 ... P70673 38509107
    800160 8ti2:E (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    800161 8ti2:E (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800162 8ti2:E (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800163 8ti2:F (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    800164 8ti2:F (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800165 8ti2:F (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800166 8ti2:G (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    800167 8ti2:G (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800168 8ti2:G (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800169 8ti2:H (3.28) BS01 PT5 ? GO:0005524 ... A0A1S4NYG1 38509107
    800170 8ti2:H (3.28) BS02 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800171 8ti2:H (3.28) BS03 P5S ? GO:0005524 ... A0A1S4NYG1 38509107
    800172 8ti3:A (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800173 8ti3:B (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800174 8ti3:C (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800175 8ti3:D (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800176 8ti3:E (4.43) BS01 ADP N/A GO:0000011 ... P60009 N/A
    800177 8ti7:A (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800178 8ti7:A (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800179 8ti7:C (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800180 8ti7:C (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800181 8ti7:E (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800182 8ti7:E (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800183 8ti7:G (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800184 8ti7:I (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800185 8ti7:K (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800186 8ti7:K (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800187 8ti7:K (2.397) BS03 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800188 8ti7:M (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800189 8ti7:O (2.397) BS01 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800190 8ti7:O (2.397) BS02 peptide ? GO:0003779 ... A0A2L0EBJ5 38662449
    800191 8tic:A (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800192 8tic:B (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800193 8tic:C (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800194 8tic:D (2.7) BS01 FKX 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    800195 8tip:C (2.79) BS01 dna ? GO:0003677 ... P03856 N/A
    800196 8tip:C (2.79) BS02 dna ? GO:0003677 ... P03856 N/A
    800197 8tip:C (2.79) BS03 MG ? GO:0003677 ... P03856 N/A
    800198 8tip:C (2.79) BS04 MG ? GO:0003677 ... P03856 N/A
    800199 8tiq:C (2.45) BS01 dna ? GO:0003677 ... P03856 N/A
    800200 8tiq:C (2.45) BS02 dna ? GO:0003677 ... P03856 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).
  • yangzhanglabumich.edu | (734) 647-1549 | 100 Washtenaw Avenue, Ann Arbor, MI 48109-2218