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●BioLiP ●E. coli ●GLASS ●GPCR-HGmod ●GPCR-RD ●GPCR-EXP ●Tara-3D ●TM-fold ●DECOYS ●POTENTIAL ●RW/RWplus ●EvoEF ●HPSF ●THE-DB ●ADDRESS ●Alpaca-Antibody ●CASP7 ●CASP8 ●CASP9 ●CASP10 ●CASP11 ●CASP12 ●CASP13 ●CASP14

BioLiP
Download all results in tab-seperated text for 817662 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    799201 8t9h:B (3.37) BS01 dna ? GO:0000786 ... P62799 36993485
    799202 8t9h:B (3.37) BS02 dna ? GO:0000786 ... P62799 36993485
    799203 8t9h:C (3.37) BS01 dna ? GO:0000786 ... P06897 36993485
    799204 8t9h:C (3.37) BS02 dna ? GO:0000786 ... P06897 36993485
    799205 8t9h:D (3.37) BS01 dna ? GO:0000786 ... P02281 36993485
    799206 8t9h:E (3.37) BS01 dna ? GO:0000786 ... P84233 36993485
    799207 8t9h:E (3.37) BS02 dna ? GO:0000786 ... P84233 36993485
    799208 8t9h:F (3.37) BS01 dna ? GO:0000786 ... P62799 36993485
    799209 8t9h:F (3.37) BS02 dna ? GO:0000786 ... P62799 36993485
    799210 8t9h:G (3.37) BS01 dna ? GO:0000786 ... P06897 36993485
    799211 8t9h:H (3.37) BS01 dna ? GO:0000786 ... P02281 36993485
    799212 8t9u:F (1.47) BS01 dna ? GO:0003700 ... P17947 38042148
    799213 8t9u:F (1.47) BS02 dna ? GO:0003700 ... P17947 38042148
    799214 8t9v:A (1.945) BS01 ZJT 3.2.2.22 GO:0017148 ... P02879 38340640
    799215 8t9x:A (2.0) BS01 dna ? GO:0005198 ... A0AA49QGS8 N/A
    799216 8t9x:A (2.0) BS02 dna ? GO:0005198 ... A0AA49QGS8 N/A
    799217 8ta2:A (2.74) BS01 GH6 ? GO:0005247 ... P51788 38345841
    799218 8ta2:A (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    799219 8ta2:B (2.74) BS01 GH6 ? GO:0005247 ... P51788 38345841
    799220 8ta2:B (2.74) BS02 CL ? GO:0005247 ... P51788 38345841
    799221 8tab:A (2.26) BS01 U4T 3.2.2.22 GO:0017148 ... P02879 38340640
    799222 8tad:A (2.76) BS01 ZXJ 3.2.2.22 GO:0017148 ... P02879 38340640
    799223 8taf:J (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    799224 8taf:L (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    799225 8taf:M (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    799226 8taf:N (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    799227 8taf:O (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    799228 8taf:P (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    799229 8taf:Q (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    799230 8taf:R (3.2) BS01 ZN N/A GO:0005198 ... N/A 38177118
    799231 8tag:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    799232 8tag:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    799233 8tag:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    799234 8tah:A (2.89) BS01 peptide ? GO:0003779 ... P61157 37898612
    799235 8tah:A (2.89) BS02 ATP ? GO:0003779 ... P61157 37898612
    799236 8tah:B (2.89) BS01 ATP ? GO:0003779 ... A7MB62 37898612
    799237 8tai:A (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    799238 8tai:B (3.1) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    799239 8tai:B (3.1) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    799240 8tal:A (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    799241 8tal:B (3.2) BS01 CA ? GO:0002407 ... Q6P9J9 37573365
    799242 8tal:B (3.2) BS02 CA ? GO:0002407 ... Q6P9J9 37573365
    799243 8tao:A (2.9) BS01 QUS ? GO:0004930 ... P41594 38632403
    799244 8tao:B (2.9) BS01 YKU ? GO:0004930 ... P41594 38632403
    799245 8tao:B (2.9) BS02 QUS ? GO:0004930 ... P41594 38632403
    799246 8tat:A (1.6) BS01 GFX 3.2.1.17 GO:0003796 ... A0A7S9SVX7 38357006
    799247 8tat:A (1.6) BS02 GFX 3.2.1.17 GO:0003796 ... A0A7S9SVX7 38357006
    799248 8tav:A (1.39) BS01 ZKR N/A GO:0016020 ... Q2G025 N/A
    799249 8tav:A (1.39) BS02 ZKR N/A GO:0016020 ... Q2G025 N/A
    799250 8tav:A (1.39) BS03 ZKR N/A GO:0016020 ... Q2G025 N/A
    799251 8tav:A (1.39) BS04 CA N/A GO:0016020 ... Q2G025 N/A
    799252 8tav:A (1.39) BS05 CA N/A GO:0016020 ... Q2G025 N/A
    799253 8taw:A (1.73) BS01 HEM ? GO:0004497 ... Q2IU02 37837941
    799254 8taw:A (1.73) BS02 PQS ? GO:0004497 ... Q2IU02 37837941
    799255 8tay:A (2.021) BS01 EJD ? GO:0004497 ... Q2IU02 37837941
    799256 8tay:A (2.021) BS02 HEM ? GO:0004497 ... Q2IU02 37837941
    799257 8tb5:A (2.32) BS01 ZOQ 2.7.10.2 GO:0004672 ... P29597 37823891
    799258 8tb5:B (2.32) BS01 ZOQ 2.7.10.2 GO:0004672 ... P29597 37823891
    799259 8tb6:A (1.96) BS01 ZOI 2.7.10.2 GO:0004672 ... P29597 37823891
    799260 8tb6:B (1.96) BS01 ZOI 2.7.10.2 GO:0004672 ... P29597 37823891
    799261 8tb7:R (2.94) BS01 ZOB ? GO:0004930 ... P0ABE7
    Q9BZJ8    		 37741852
    799262 8tba:A (1.65) BS01 ZMX N/A GO:0008360 ... Q9ZLT0 N/A
    799263 8tba:A (1.65) BS02 DGL N/A GO:0008360 ... Q9ZLT0 N/A
    799264 8tba:B (1.65) BS01 DGL N/A GO:0008360 ... Q9ZLT0 N/A
    799265 8tbe:A (2.15) BS01 ZQB 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37800975
    799266 8tbe:B (2.15) BS01 ZQB 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37800975
    799267 8tbf:A (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799268 8tbf:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799269 8tbf:A (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799270 8tbf:B (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799271 8tbf:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799272 8tbf:B (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799273 8tbf:C (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799274 8tbf:D (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799275 8tbg:A (1.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 38589574
    799276 8tbg:A (1.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38589574
    799277 8tbg:A (1.2) BS03 ZNI 3.6.5.2 GO:0003924 ... P01112 38589574
    799278 8tbg:B (1.2) BS01 GNP 3.6.5.2 GO:0003924 ... P01112 38589574
    799279 8tbg:B (1.2) BS02 MG 3.6.5.2 GO:0003924 ... P01112 38589574
    799280 8tbg:B (1.2) BS03 ZNI 3.6.5.2 GO:0003924 ... P01112 38589574
    799281 8tbg:C (1.2) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799282 8tbg:D (1.2) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799283 8tbh:A (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799284 8tbh:A (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799285 8tbh:A (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799286 8tbh:B (1.5) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799287 8tbh:B (1.5) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799288 8tbh:B (1.5) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799289 8tbh:C (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799290 8tbh:D (1.5) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799291 8tbi:A (1.59) BS01 GNP 3.6.5.2 GO:0000139 ... P01111 38589574
    799292 8tbi:A (1.59) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38589574
    799293 8tbi:A (1.59) BS03 ZNI 3.6.5.2 GO:0000139 ... P01111 38589574
    799294 8tbi:B (1.59) BS01 GNP 3.6.5.2 GO:0000139 ... P01111 38589574
    799295 8tbi:B (1.59) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38589574
    799296 8tbi:B (1.59) BS03 ZNI 3.6.5.2 GO:0000139 ... P01111 38589574
    799297 8tbi:C (1.59) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799298 8tbi:D (1.59) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799299 8tbj:A (1.45) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799300 8tbj:A (1.45) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799301 8tbj:A (1.45) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799302 8tbj:B (1.45) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799303 8tbj:B (1.45) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799304 8tbj:B (1.45) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799305 8tbj:C (1.45) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799306 8tbj:D (1.45) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799307 8tbk:A (1.26) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799308 8tbk:A (1.26) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799309 8tbk:A (1.26) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799310 8tbk:B (1.26) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799311 8tbk:B (1.26) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799312 8tbk:B (1.26) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799313 8tbk:C (1.26) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799314 8tbk:D (1.26) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799315 8tbl:A (1.88) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799316 8tbl:A (1.88) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799317 8tbl:A (1.88) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799318 8tbl:B (1.88) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799319 8tbl:B (1.88) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799320 8tbl:B (1.88) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799321 8tbl:C (1.88) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799322 8tbl:D (1.88) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799323 8tbm:A (1.57) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799324 8tbm:A (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799325 8tbm:A (1.57) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799326 8tbm:B (1.57) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799327 8tbm:B (1.57) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799328 8tbm:B (1.57) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799329 8tbm:C (1.57) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799330 8tbm:D (1.57) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799331 8tbn:A (1.46) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799332 8tbn:A (1.46) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799333 8tbn:A (1.46) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799334 8tbn:B (1.46) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 38589574
    799335 8tbn:B (1.46) BS02 MG 3.6.5.2 GO:0003924 ... P01116 38589574
    799336 8tbn:B (1.46) BS03 ZNI 3.6.5.2 GO:0003924 ... P01116 38589574
    799337 8tbn:C (1.46) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799338 8tbn:D (1.46) BS01 ZNI 5.2.1.8 GO:0000413 ... P62937 38589574
    799339 8tbp:A (3.12621) BS01 peptide ? GO:0006955 ... P01903 38321013
    799340 8tbp:B (3.12621) BS01 peptide ? GO:0006955 ... P01911 38321013
    799341 8tbp:C (3.12621) BS01 peptide ? GO:0006955 ... P01903 38321013
    799342 8tbp:D (3.12621) BS01 peptide ? GO:0006955 ... P01911 38321013
    799343 8tbs:A (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799344 8tbs:A (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799345 8tbs:A (2.35) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799346 8tbs:A (2.35) BS04 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    799347 8tbs:B (2.35) BS01 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    799348 8tbs:B (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799349 8tbs:B (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799350 8tbs:B (2.35) BS04 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799351 8tbs:C (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799352 8tbs:C (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799353 8tbs:C (2.35) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799354 8tbs:C (2.35) BS04 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    799355 8tbs:D (2.35) BS01 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    799356 8tbs:D (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799357 8tbs:D (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799358 8tbs:D (2.35) BS04 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799359 8tbs:E (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799360 8tbs:E (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799361 8tbs:E (2.35) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799362 8tbs:E (2.35) BS04 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    799363 8tbs:F (2.35) BS01 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    799364 8tbs:F (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799365 8tbs:F (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799366 8tbs:F (2.35) BS04 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799367 8tbs:G (2.35) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799368 8tbs:G (2.35) BS02 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799369 8tbs:G (2.35) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799370 8tbs:G (2.35) BS04 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    799371 8tbs:H (2.35) BS01 HVI 2.7.1.40 GO:0000287 ... P30613 38109501
    799372 8tbs:H (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799373 8tbs:H (2.35) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799374 8tbs:H (2.35) BS04 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799375 8tbt:A (2.34) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799376 8tbt:A (2.34) BS02 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799377 8tbt:A (2.34) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799378 8tbt:A (2.34) BS04 I07 2.7.1.40 GO:0000287 ... P30613 38109501
    799379 8tbt:B (2.34) BS01 I07 2.7.1.40 GO:0000287 ... P30613 38109501
    799380 8tbt:B (2.34) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799381 8tbt:B (2.34) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799382 8tbt:B (2.34) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799383 8tbt:C (2.34) BS01 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799384 8tbt:C (2.34) BS02 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799385 8tbt:C (2.34) BS03 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799386 8tbt:C (2.34) BS04 I07 2.7.1.40 GO:0000287 ... P30613 38109501
    799387 8tbt:D (2.34) BS01 I07 2.7.1.40 GO:0000287 ... P30613 38109501
    799388 8tbt:D (2.34) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799389 8tbt:D (2.34) BS03 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799390 8tbt:D (2.34) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799391 8tbu:A (2.35) BS01 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    799392 8tbu:A (2.35) BS02 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799393 8tbu:A (2.35) BS03 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799394 8tbu:A (2.35) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799395 8tbu:B (2.35) BS01 I0R 2.7.1.40 GO:0000287 ... P30613 38109501
    799396 8tbu:B (2.35) BS02 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799397 8tbu:B (2.35) BS03 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    799398 8tbu:B (2.35) BS04 MN 2.7.1.40 GO:0000287 ... P30613 38109501
    799399 8tbu:C (2.35) BS01 PYR 2.7.1.40 GO:0000287 ... P30613 38109501
    799400 8tbu:C (2.35) BS02 FBP 2.7.1.40 GO:0000287 ... P30613 38109501
    Reference:
  • Chengxin Zhang, Xi Zhang, Peter L Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).

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